TRAM, LAG1 and CLN8 homology domains.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14285 |
| fragaria_vesca | FvH4_4g24350 FvH4_6g52910 FvH4_6g52910 |
| malus_domestica | MD09G1016200.v1.1 MD13G1111900.v1.1 MD16G1111500.v1.1 MD17G1016700.v1.1 |
| prunus_persica | Prupe.1G233600_v2.0.a1 Prupe.1G233600_v2.0.a1 Prupe.3G301200_v2.0.a1 |
| pyrus_communis | pycom13g09730 pycom16g09450 pycom17g01340 |
| rosa_chinensis | RchiOBHm_Chr2g0174621 RchiOBHm_Chr4g0431211 |
| rosa_laevigata | RLG00000006919 RLG00000022277 |
| rosa_multiflora | Rmu_sc0013514.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00078000 Rroxscaffold_5G00372750 |
| rosa_rugosa | Rorug02G0578100 Rorug04G0249300 |
| rosa_samantha | Rh2AG659300 Rh2BG670100 Rh2CG633400 Rh2DG683900 Rh4AG305300 Rh4BG312600 Rh4DG309200 |
| rosa_wichuraiana | Rw2G054000 Rw4G026530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 91, 196 |
| AclI | AACGTT | 1 cut(s) | 441 |
| AclWI | GGATC | 1 cut(s) | 704 |
| AcsI | RAATTY | 3 cut(s) | 7, 251, 612 |
| AfaI | GTAC | 2 cut(s) | 497, 720 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 97 |
| AflIII | ACRYGT | 1 cut(s) | 348 |
| AgsI | TTSAA | 5 cut(s) | 12, 126, 251, 571, 688 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 505 |
| AluBI | AGCT | 4 cut(s) | 129, 146, 263, 602 |
| AluI | AGCT | 4 cut(s) | 129, 146, 263, 602 |
| Alw26I | GTCTC | 1 cut(s) | 513 |
| AlwI | GGATC | 1 cut(s) | 704 |
| AoxI | GGCC | 3 cut(s) | 151, 384, 664 |
| ApeKI | GCWGC | 6 cut(s) | 129, 161, 432, 482, 485, 599 |
| ApoI | RAATTY | 3 cut(s) | 7, 251, 612 |
| AspS9I | GGNCC | 5 cut(s) | 101, 152, 384, 447, 554 |
| AsuHPI | GGTGA | 1 cut(s) | 468 |
| AvaII | GGWCC | 3 cut(s) | 101, 447, 554 |
| BbvI | GCAGC | 6 cut(s) | 116, 173, 419, 469, 472, 611 |
| BccI | CCATC | 4 cut(s) | 182, 615, 634, 668 |
| BcoDI | GTCTC | 1 cut(s) | 513 |
| BfaI | CTAG | 1 cut(s) | 143 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BisI | GCNGC | 7 cut(s) | 130, 162, 196, 433, 483, 486, 600 |
| BlsI | GCNGC | 7 cut(s) | 131, 163, 197, 434, 484, 487, 601 |
| Bme18I | GGWCC | 3 cut(s) | 101, 447, 554 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 5 cut(s) | 101, 152, 384, 447, 554 |
| BmiI | GGNNCC | 4 cut(s) | 102, 385, 449, 556 |
| BmrI | ACTGGG | 2 cut(s) | 106, 300 |
| BmsI | GCATC | 1 cut(s) | 30 |
| BmuI | ACTGGG | 2 cut(s) | 106, 300 |
| Bpu10I | CCTNAGC | 1 cut(s) | 668 |
| Bsa29I | ATCGAT | 1 cut(s) | 699 |
| BsaAI | YACGTR | 2 cut(s) | 349, 370 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 97 |
| Bse118I | RCCGGY | 1 cut(s) | 478 |
| Bse1I | ACTGG | 2 cut(s) | 101, 306 |
| BseCI | ATCGAT | 1 cut(s) | 699 |
| BseGI | GGATG | 3 cut(s) | 21, 321, 645 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseNI | ACTGG | 2 cut(s) | 101, 306 |
| BseRI | GAGGAG | 1 cut(s) | 501 |
| BseXI | GCAGC | 6 cut(s) | 116, 173, 419, 469, 472, 611 |
| BshFI | GGCC | 3 cut(s) | 153, 386, 666 |
| BshVI | ATCGAT | 1 cut(s) | 699 |
| BsiSI | CCGG | 1 cut(s) | 479 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BsmAI | GTCTC | 1 cut(s) | 513 |
| BsnI | GGCC | 3 cut(s) | 153, 386, 666 |
| Bsp143I | GATC | 1 cut(s) | 696 |
| BspACI | CCGC | 2 cut(s) | 91, 196 |
| BspANI | GGCC | 3 cut(s) | 153, 386, 666 |
| BspDI | ATCGAT | 1 cut(s) | 699 |
| BspLI | GGNNCC | 4 cut(s) | 102, 385, 449, 556 |
| BspPI | GGATC | 1 cut(s) | 704 |
| BsrFI | RCCGGY | 1 cut(s) | 478 |
| BsrI | ACTGG | 2 cut(s) | 101, 306 |
| BssAI | RCCGGY | 1 cut(s) | 478 |
| BssMI | GATC | 1 cut(s) | 696 |
| Bst4CI | ACNGT | 1 cut(s) | 533 |
| Bst6I | CTCTTC | 1 cut(s) | 302 |
| BstBAI | YACGTR | 2 cut(s) | 349, 370 |
| BstDEI | CTNAG | 1 cut(s) | 668 |
| BstF5I | GGATG | 3 cut(s) | 21, 321, 645 |
| BstKTI | GATC | 1 cut(s) | 699 |
| BstMAI | GTCTC | 1 cut(s) | 513 |
| BstMBI | GATC | 1 cut(s) | 696 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 596 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstV1I | GCAGC | 6 cut(s) | 116, 173, 419, 469, 472, 611 |
| Bsu15I | ATCGAT | 1 cut(s) | 699 |
| BsuRI | GGCC | 3 cut(s) | 153, 386, 666 |
| BsuTUI | ATCGAT | 1 cut(s) | 699 |
| BtsCI | GGATG | 3 cut(s) | 21, 321, 645 |
| BtsIMutI | CAGTG | 2 cut(s) | 313, 538 |
| Cfr10I | RCCGGY | 1 cut(s) | 478 |
| Cfr13I | GGNCC | 5 cut(s) | 101, 152, 384, 447, 554 |
| ClaI | ATCGAT | 1 cut(s) | 699 |
| Csp6I | GTAC | 2 cut(s) | 496, 719 |
| CviAII | CATG | 4 cut(s) | 149, 380, 565, 627 |
| CviQI | GTAC | 2 cut(s) | 496, 719 |
| DdeI | CTNAG | 1 cut(s) | 668 |
| DpnI | GATC | 1 cut(s) | 698 |
| DpnII | GATC | 1 cut(s) | 696 |
| DriI | GACNNNNNGTC | 1 cut(s) | 505 |
| Eam1104I | CTCTTC | 1 cut(s) | 302 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 505 |
| EarI | CTCTTC | 1 cut(s) | 302 |
| Eco47I | GGWCC | 3 cut(s) | 101, 447, 554 |
| EcoO109I | RGGNCCY | 1 cut(s) | 384 |
| EcoRI | GAATTC | 2 cut(s) | 7, 251 |
| FaeI | CATG | 4 cut(s) | 152, 383, 568, 630 |
| FatI | CATG | 4 cut(s) | 148, 379, 564, 626 |
| Fnu4HI | GCNGC | 7 cut(s) | 130, 162, 196, 433, 483, 486, 600 |
| FokI | GGATG | 3 cut(s) | 8, 308, 652 |
| Fsp4HI | GCNGC | 7 cut(s) | 130, 162, 196, 433, 483, 486, 600 |
| FspBI | CTAG | 1 cut(s) | 143 |
| GluI | GCNGC | 7 cut(s) | 130, 162, 196, 433, 483, 486, 600 |
| HaeIII | GGCC | 3 cut(s) | 153, 386, 666 |
| HapII | CCGG | 1 cut(s) | 479 |
| Hin1II | CATG | 4 cut(s) | 152, 383, 568, 630 |
| HinfI | GANTC | 2 cut(s) | 473, 688 |
| HpaII | CCGG | 1 cut(s) | 479 |
| HphI | GGTGA | 1 cut(s) | 468 |
| Hpy166II | GTNNAC | 1 cut(s) | 354 |
| Hpy188I | TCNGA | 1 cut(s) | 542 |
| Hpy8I | GTNNAC | 1 cut(s) | 354 |
| HpyAV | CCTTC | 2 cut(s) | 49, 293 |
| HpyCH4III | ACNGT | 1 cut(s) | 533 |
| HpyCH4IV | ACGT | 3 cut(s) | 348, 369, 441 |
| HpyCH4V | TGCA | 2 cut(s) | 455, 590 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 596 |
| HpyF3I | CTNAG | 1 cut(s) | 668 |
| HpySE526I | ACGT | 3 cut(s) | 348, 369, 441 |
| Hsp92II | CATG | 4 cut(s) | 152, 383, 568, 630 |
| Kzo9I | GATC | 1 cut(s) | 696 |
| Lsp1109I | GCAGC | 6 cut(s) | 116, 173, 419, 469, 472, 611 |
| LweI | GCATC | 1 cut(s) | 30 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 3 cut(s) | 348, 369, 441 |
| MaeIII | GTNAC | 1 cut(s) | 365 |
| MalI | GATC | 1 cut(s) | 698 |
| MboI | GATC | 1 cut(s) | 696 |
| MboII | GAAGA | 5 cut(s) | 34, 262, 289, 292, 736 |
| MluCI | AATT | 7 cut(s) | 7, 12, 251, 420, 491, 612, 654 |
| MnlI | CCTC | 8 cut(s) | 112, 197, 226, 290, 335, 522, 536, 726 |
| MseI | TTAA | 1 cut(s) | 653 |
| MspA1I | CMGCKG | 1 cut(s) | 602 |
| MspI | CCGG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 596 |
| NdeII | GATC | 1 cut(s) | 696 |
| NlaIII | CATG | 4 cut(s) | 152, 383, 568, 630 |
| NlaIV | GGNNCC | 4 cut(s) | 102, 385, 449, 556 |
| PfeI | GAWTC | 2 cut(s) | 473, 688 |
| PkrI | GCNGC | 7 cut(s) | 131, 163, 197, 434, 484, 487, 601 |
| Ppu21I | YACGTR | 2 cut(s) | 349, 370 |
| Psp1406I | AACGTT | 1 cut(s) | 441 |
| PspN4I | GGNNCC | 4 cut(s) | 102, 385, 449, 556 |
| PspPI | GGNCC | 5 cut(s) | 101, 152, 384, 447, 554 |
| PvuII | CAGCTG | 1 cut(s) | 602 |
| RsaI | GTAC | 2 cut(s) | 497, 720 |
| RsaNI | GTAC | 2 cut(s) | 496, 719 |
| SaqAI | TTAA | 1 cut(s) | 653 |
| SatI | GCNGC | 7 cut(s) | 130, 162, 196, 433, 483, 486, 600 |
| Sau3AI | GATC | 1 cut(s) | 696 |
| Sau96I | GGNCC | 5 cut(s) | 101, 152, 384, 447, 554 |
| SfaNI | GCATC | 1 cut(s) | 30 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| SinI | GGWCC | 3 cut(s) | 101, 447, 554 |
| Sse9I | AATT | 7 cut(s) | 7, 12, 251, 420, 491, 612, 654 |
| SsiI | CCGC | 2 cut(s) | 91, 196 |
| SspMI | CTAG | 1 cut(s) | 143 |
| TaaI | ACNGT | 1 cut(s) | 533 |
| TaiI | ACGT | 3 cut(s) | 351, 372, 444 |
| TaqI | TCGA | 1 cut(s) | 699 |
| TasI | AATT | 7 cut(s) | 7, 12, 251, 420, 491, 612, 654 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TauI | GCSGC | 1 cut(s) | 198 |
| TfiI | GAWTC | 2 cut(s) | 473, 688 |
| Tru1I | TTAA | 1 cut(s) | 653 |
| Tru9I | TTAA | 1 cut(s) | 653 |
| TscAI | CASTG | 2 cut(s) | 313, 538 |
| TseI | GCWGC | 6 cut(s) | 129, 161, 432, 482, 485, 599 |
| TspDTI | ATGAA | 3 cut(s) | 310, 365, 553 |
| TspRI | CASTG | 2 cut(s) | 313, 538 |
| VpaK11BI | GGWCC | 3 cut(s) | 101, 447, 554 |
| XapI | RAATTY | 3 cut(s) | 7, 251, 612 |
| XspI | CTAG | 1 cut(s) | 143 |