Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004398

Physical Location & Seq

Genomic Coordinates Reverse (-)

26582319 .. 26583585

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G301200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAACCCAAAACCCAATCCCATGCCTCCTCATCTTCTTCCCCATGTTCTTCGTCGTCTACCTCATTGCCTACTTCATCGTCTTCCGTACTTGGAGCCCTAAGATCCGACCCGAAGCCTCCAGCTGCCTAATTTCCCTCGCCCACGGCACCCCCGCCGTCTTCTTATCCACTTACGCCATACTCGCCTACCCGGCCACCGGCTTCGCCTCCCAAAACACCCGCTTCCAGAACACCGTTCTCGATTACAGCGTCGCCTACTTCCTCACCGATCTTCTCCACTACATCGTCTTCTTCCCCAGTGACGTCCTCTTCATCGGCCACCACTTGGCCACGCTCTTCGTCTTCCTCACCTGCCGATACGTGGCGTCCCACGGCGCATTCGCCATTCTCTCTCTTCTGATCCTGGCCGAGGTCACCAGCTTGTGCCAGAACGTGTGGACGCTCGCGAACGCTCGGAGAAGGGACTTGGAATTTGCAGCTAAGGTGTATGATCTTTTGTCTCCTCCTTTTTACGTGTTGTATTCGATTGTGCGGGGATTGGTGGGTCCGTATTTCGTGTACCGAATGGGTGCGTTTTATGTAGGCGGTGAGGCTGATGGTTTGATTCCGAGGTGGGTTTGGGTTTCTTGGATTGTTGTGGTAATGTCAGCTATCTCTGTTAGCATTTTGTGGATTTCGAATCTTTGGGTTGAGTTGTTTAGAGCAAGGACTGGCAACTTGGAAAAGAAAACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573 TRAM_LAG1_CLN8

Protein Analysis

247

Amino Acids

28.02

Weight (kDa)

8.88

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14285
fragaria_vesca	FvH4_4g24350 FvH4_6g52910 FvH4_6g52910
malus_domestica	MD09G1016200.v1.1 MD13G1111900.v1.1 MD16G1111500.v1.1 MD17G1016700.v1.1
prunus_persica	Prupe.1G233600_v2.0.a1 Prupe.1G233600_v2.0.a1 Prupe.3G301200_v2.0.a1
pyrus_communis	pycom13g09730 pycom16g09450 pycom17g01340
rosa_chinensis	RchiOBHm_Chr2g0174621 RchiOBHm_Chr4g0431211
rosa_laevigata	RLG00000006919 RLG00000022277
rosa_multiflora	Rmu_sc0013514.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078000 Rroxscaffold_5G00372750
rosa_rugosa	Rorug02G0578100 Rorug04G0249300
rosa_samantha	Rh2AG659300 Rh2BG670100 Rh2CG633400 Rh2DG683900 Rh4AG305300 Rh4BG312600 Rh4DG309200
rosa_wichuraiana	Rw2G054000 Rw4G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	449
AciI	CCGC	4 cut(s)	156, 223, 535, 588
AclWI	GGATC	2 cut(s)	100, 397
AcoI	YGGCCR	4 cut(s)	195, 319, 330, 408
AcsI	RAATTY	1 cut(s)	473
AcyI	GRCGYC	2 cut(s)	306, 368
AfaI	GTAC	2 cut(s)	91, 563
AfiI	CCNNNNNNNGG	4 cut(s)	200, 328, 364, 412
AflIII	ACRYGT	2 cut(s)	435, 516
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	4 cut(s)	126, 423, 482, 653
AluI	AGCT	4 cut(s)	126, 423, 482, 653
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	2 cut(s)	100, 397
AoxI	GGCC	4 cut(s)	195, 319, 330, 408
ApeKI	GCWGC	2 cut(s)	126, 479
ApoI	RAATTY	1 cut(s)	473
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	259, 343, 409, 602
AsuII	TTCGAA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	101
BbsI	GAAGAC	4 cut(s)	76, 154, 283, 337
BbvI	GCAGC	2 cut(s)	113, 491
BccI	CCATC	1 cut(s)	593
BceAI	ACGGC	3 cut(s)	143, 163, 391
BciT130I	CCWGG	1 cut(s)	407
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	127, 480
BlsI	GCNGC	2 cut(s)	128, 481
Bme1390I	CCNGG	2 cut(s)	194, 407
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	98, 151, 549
BmrFI	CCNGG	2 cut(s)	194, 407
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	4 cut(s)	76, 154, 283, 337
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	194
BsaAI	YACGTR	2 cut(s)	364, 517
BsaHI	GRCGYC	2 cut(s)	306, 368
BsaJI	CCNNGG	4 cut(s)	145, 373, 411, 611
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 328, 364, 412
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	300, 718
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	4 cut(s)	145, 373, 411, 611
BseLI	CCNNNNNNNGG	4 cut(s)	200, 328, 364, 412
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	300, 718
BseRI	GAGGAG	2 cut(s)	20, 495
BseXI	GCAGC	2 cut(s)	113, 491
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	4 cut(s)	197, 321, 332, 410
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	194, 201
BslFI	GGGAC	2 cut(s)	355, 479
BslI	CCNNNNNNNGG	4 cut(s)	200, 328, 364, 412
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	355, 479
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	197, 321, 332, 410
Bsp119I	TTCGAA	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	105, 271, 402, 493
Bsp68I	TCGCGA	1 cut(s)	449
BspACI	CCGC	4 cut(s)	156, 223, 535, 588
BspANI	GGCC	4 cut(s)	197, 321, 332, 410
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	3 cut(s)	98, 151, 549
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	100, 397
BspQI	GCTCTTC	1 cut(s)	344
BspT104I	TTCGAA	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	300, 718
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	145, 373, 411, 611
BssMI	GATC	4 cut(s)	105, 271, 402, 493
BssNI	GRCGYC	2 cut(s)	306, 368
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	3 cut(s)	317, 344, 402
BstACI	GRCGYC	2 cut(s)	306, 368
BstBAI	YACGTR	2 cut(s)	364, 517
BstBI	TTCGAA	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	102, 483
BstDSI	CCRYGG	2 cut(s)	145, 373
BstEII	GGTNACC	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	4 cut(s)	108, 274, 405, 496
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	4 cut(s)	105, 271, 402, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 194
BstNI	CCWGG	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	192, 405
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	113, 491
BstV2I	GAAGAC	4 cut(s)	76, 154, 283, 337
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	197, 321, 332, 410
BtgI	CCRYGG	2 cut(s)	145, 373
BtsIMutI	CAGTG	1 cut(s)	307
BtuMI	TCGCGA	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	548
CseI	GACGC	3 cut(s)	241, 357, 451
Csp6I	GTAC	2 cut(s)	90, 562
CviAII	CATG	2 cut(s)	24, 46
CviQI	GTAC	2 cut(s)	90, 562
DdeI	CTNAG	2 cut(s)	102, 483
DpnI	GATC	4 cut(s)	107, 273, 404, 495
DpnII	GATC	4 cut(s)	105, 271, 402, 493
EaeI	YGGCCR	4 cut(s)	195, 319, 330, 408
Eam1104I	CTCTTC	3 cut(s)	317, 344, 402
EarI	CTCTTC	3 cut(s)	317, 344, 402
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	548
Eco91I	GGTNACC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	2 cut(s)	27, 49
FaiI	YATR	5 cut(s)	25, 47, 182, 492, 582
FaqI	GGGAC	2 cut(s)	355, 479
FatI	CATG	2 cut(s)	23, 45
FauI	CCCGC	3 cut(s)	163, 230, 528
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	127, 480
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	127, 480
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	127, 480
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	4 cut(s)	197, 321, 332, 410
HapII	CCGG	2 cut(s)	194, 201
HgaI	GACGC	3 cut(s)	241, 357, 451
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	2 cut(s)	306, 368
Hin1II	CATG	2 cut(s)	27, 49
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	607, 682
HpaII	CCGG	2 cut(s)	194, 201
HphI	GGTGA	4 cut(s)	259, 343, 409, 602
Hpy166II	GTNNAC	3 cut(s)	61, 441, 562
Hpy188I	TCNGA	4 cut(s)	110, 402, 459, 612
Hpy188III	TCNNGA	3 cut(s)	229, 242, 448
Hpy8I	GTNNAC	3 cut(s)	61, 441, 562
Hpy99I	CGWCG	2 cut(s)	59, 257
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	4 cut(s)	306, 363, 435, 516
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 194
HpyF3I	CTNAG	2 cut(s)	102, 483
HpySE526I	ACGT	4 cut(s)	306, 363, 435, 516
Hsp92I	GRCGYC	2 cut(s)	306, 368
Hsp92II	CATG	2 cut(s)	27, 49
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	4 cut(s)	105, 271, 402, 493
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	2 cut(s)	113, 491
MaeII	ACGT	4 cut(s)	306, 363, 435, 516
MaeIII	GTNAC	2 cut(s)	302, 415
MalI	GATC	4 cut(s)	107, 273, 404, 495
MboI	GATC	4 cut(s)	105, 271, 402, 493
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	2 cut(s)	132, 473
MluNI	TGGCCA	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	133
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	194, 201
MspR9I	CCNGG	2 cut(s)	194, 407
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	185, 194
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	4 cut(s)	105, 271, 402, 493
NlaIII	CATG	2 cut(s)	27, 49
NlaIV	GGNNCC	3 cut(s)	98, 151, 549
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	302, 415
NruI	TCGCGA	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	680
PaqCI	CACCTGC	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	607, 682
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	128, 481
Ppu21I	YACGTR	2 cut(s)	364, 517
Psp6I	CCWGG	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	98, 151, 549
PspPI	GGNCC	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	126
RruI	TCGCGA	1 cut(s)	449
RsaI	GTAC	2 cut(s)	91, 563
RsaNI	GTAC	2 cut(s)	90, 562
SapI	GCTCTTC	1 cut(s)	344
SatI	GCNGC	2 cut(s)	127, 480
Sau3AI	GATC	4 cut(s)	105, 271, 402, 493
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	2 cut(s)	194, 407
SduI	GDGCHC	1 cut(s)	101
SfuI	TTCGAA	1 cut(s)	680
SinI	GGWCC	1 cut(s)	548
Sse9I	AATT	2 cut(s)	132, 473
SsiI	CCGC	4 cut(s)	156, 223, 535, 588
StyD4I	CCNGG	2 cut(s)	192, 405
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	4 cut(s)	309, 366, 438, 519
TaqI	TCGA	3 cut(s)	243, 527, 680
TasI	AATT	2 cut(s)	132, 473
TfiI	GAWTC	2 cut(s)	607, 682
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	302, 415
TseI	GCWGC	2 cut(s)	126, 479
Tsp45I	GTSAC	2 cut(s)	302, 415
TspDTI	ATGAA	2 cut(s)	67, 304
TspGWI	ACGGA	2 cut(s)	77, 540
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.