Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013514.1

Orthogroup ID

OG0004398

Physical Location & Seq

Genomic Coordinates Forward (+)

373 .. 1110

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggagaccccagttcttttcaccccaacactccccacattcttcaccatgttctttctcatctatctcttcgctagattcgtgctttttcgaagctggggtcccaaacataggccagaagcttccagctgtgtaatatctctagctcatagcactcctgcagttttcatggcgatccatgcactaattcatagccagacaacttccattttcgcctcccacaacacggctttcgaaaacactgtgcttgaatacagcatagcttacttcttggttgaccttcttcactacttgctcttcttcccttctgaagtcctcttcattcttcaccacctggccacactgtacgtgtttttgacttgccgctatgtggttcatcacggggcttatgccatcatcgtgcttctttttcttgctgagatcaccagcggttgccagaacgtgtggacacttgcgagttttcaaagggatcattcggcttctgctgcaaaactgtatgactacttgtctcctcggttttatgctttttacactgtttttagaggggttctggggcctctgtttatgtttaagatggggttgttctatgcgagtggggtggccggagaagaagttccgacatgggcgtggggttcttggatggttgtgattgtaatagctatctgtgttagcatattgtgggttttgagtcattggaaagattggtacagagacaaagttcagaagaaagagaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

245

Amino Acids

28.27

Weight (kDa)

8.32

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14285
fragaria_vesca	FvH4_4g24350 FvH4_6g52910 FvH4_6g52910
malus_domestica	MD09G1016200.v1.1 MD13G1111900.v1.1 MD16G1111500.v1.1 MD17G1016700.v1.1
prunus_persica	Prupe.1G233600_v2.0.a1 Prupe.1G233600_v2.0.a1 Prupe.3G301200_v2.0.a1
pyrus_communis	pycom13g09730 pycom16g09450 pycom17g01340
rosa_chinensis	RchiOBHm_Chr2g0174621 RchiOBHm_Chr4g0431211
rosa_laevigata	RLG00000006919 RLG00000022277
rosa_multiflora	Rmu_sc0013514.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078000 Rroxscaffold_5G00372750
rosa_rugosa	Rorug02G0578100 Rorug04G0249300
rosa_samantha	Rh2AG659300 Rh2BG670100 Rh2CG633400 Rh2DG683900 Rh4AG305300 Rh4BG312600 Rh4DG309200
rosa_wichuraiana	Rw2G054000 Rw4G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	364, 429
AclWI	GGATC	2 cut(s)	169, 477
AcoI	YGGCCR	2 cut(s)	336, 600
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	347, 707
AfiI	CCNNNNNNNGG	3 cut(s)	111, 226, 370
AflIII	ACRYGT	2 cut(s)	348, 441
AgsI	TTSAA	2 cut(s)	251, 464
AhdI	GACNNNNNGTC	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	333
AloI	GAACNNNNNNTCC	2 cut(s)	597, 629
AluBI	AGCT	6 cut(s)	96, 122, 129, 146, 263, 659
AluI	AGCT	6 cut(s)	96, 122, 129, 146, 263, 659
Alw26I	GTCTC	2 cut(s)	513, 705
AlwI	GGATC	2 cut(s)	169, 477
AoxI	GGCC	4 cut(s)	113, 336, 554, 600
ApeKI	GCWGC	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	101, 554
AsuHPI	GGTGA	4 cut(s)	13, 37, 320, 415
AsuII	TTCGAA	2 cut(s)	91, 234
AvaII	GGWCC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	3 cut(s)	401, 568, 634
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	513, 705
BfaI	CTAG	2 cut(s)	75, 143
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	364, 486
BlsI	GCNGC	2 cut(s)	365, 487
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	101
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	101, 554
BmiI	GGNNCC	3 cut(s)	102, 103, 555
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
Bpu14I	TTCGAA	2 cut(s)	91, 234
BsaAI	YACGTR	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 226, 370
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	111, 226, 370
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	472
BseYI	CCCAGC	1 cut(s)	96
BshFI	GGCC	4 cut(s)	115, 338, 556, 602
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	3 cut(s)	111, 226, 370
BsmAI	GTCTC	2 cut(s)	513, 705
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	4 cut(s)	115, 338, 556, 602
Bsp119I	TTCGAA	2 cut(s)	91, 234
Bsp143I	GATC	3 cut(s)	174, 420, 469
BspACI	CCGC	2 cut(s)	364, 429
BspANI	GGCC	4 cut(s)	115, 338, 556, 602
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	102, 103, 555
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	169, 477
BspQI	GCTCTTC	1 cut(s)	302
BspT104I	TTCGAA	2 cut(s)	91, 234
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	3 cut(s)	174, 420, 469
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	4 cut(s)	244, 345, 495, 535
Bst6I	CTCTTC	3 cut(s)	74, 302, 323
BstBAI	YACGTR	1 cut(s)	349
BstBI	TTCGAA	2 cut(s)	91, 234
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	645
BstKTI	GATC	3 cut(s)	177, 423, 472
BstMAI	GTCTC	2 cut(s)	513, 705
BstMBI	GATC	3 cut(s)	174, 420, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 485
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	472
BsuRI	GGCC	4 cut(s)	115, 338, 556, 602
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	240, 341, 531
Cfr13I	GGNCC	2 cut(s)	101, 554
Csp6I	GTAC	2 cut(s)	346, 706
CviAII	CATG	4 cut(s)	49, 169, 179, 621
CviQI	GTAC	2 cut(s)	346, 706
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	176, 422, 471
DpnII	GATC	3 cut(s)	174, 420, 469
DriI	GACNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	336, 600
Eam1104I	CTCTTC	3 cut(s)	74, 302, 323
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	3 cut(s)	74, 302, 323
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	2 cut(s)	101, 554
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	4 cut(s)	52, 172, 182, 624
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	48, 168, 178, 620
Fnu4HI	GCNGC	2 cut(s)	364, 486
FokI	GGATG	1 cut(s)	652
Fsp4HI	GCNGC	2 cut(s)	364, 486
FspBI	CTAG	2 cut(s)	75, 143
GluI	GCNGC	2 cut(s)	364, 486
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	4 cut(s)	115, 338, 556, 602
HapII	CCGG	1 cut(s)	603
Hin1II	CATG	4 cut(s)	52, 172, 182, 624
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	2 cut(s)	78, 688
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	4 cut(s)	13, 37, 320, 415
Hpy166II	GTNNAC	2 cut(s)	277, 447
Hpy188I	TCNGA	3 cut(s)	310, 618, 723
Hpy8I	GTNNAC	2 cut(s)	277, 447
HpyAV	CCTTC	2 cut(s)	290, 315
HpyCH4III	ACNGT	4 cut(s)	244, 345, 495, 535
HpyCH4IV	ACGT	2 cut(s)	348, 441
HpyCH4V	TGCA	3 cut(s)	161, 182, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 485
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	348, 441
Hsp92II	CATG	4 cut(s)	52, 172, 182, 624
KflI	GGGWCCC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	174, 420, 469
LguI	GCTCTTC	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	75, 143
MaeII	ACGT	2 cut(s)	348, 441
MalI	GATC	3 cut(s)	176, 422, 471
MboI	GATC	3 cut(s)	174, 420, 469
MboII	GAAGA	9 cut(s)	34, 61, 275, 289, 292, 310, 317, 620, 736
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	6 cut(s)	226, 326, 522, 536, 567, 726
Mox20I	TGGCCA	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	2 cut(s)	398, 625
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	129, 429
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	179, 485
NdeII	GATC	3 cut(s)	174, 420, 469
NlaIII	CATG	4 cut(s)	52, 172, 182, 624
NlaIV	GGNNCC	3 cut(s)	102, 103, 555
NspV	TTCGAA	2 cut(s)	91, 234
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	365, 487
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
Ppu21I	YACGTR	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	102, 103, 555
PspPI	GGNCC	2 cut(s)	101, 554
PspPPI	RGGWCCY	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	347, 707
RsaNI	GTAC	2 cut(s)	346, 706
RseI	CAYNNNNRTG	2 cut(s)	398, 625
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	2 cut(s)	364, 486
Sau3AI	GATC	3 cut(s)	174, 420, 469
Sau96I	GGNCC	2 cut(s)	101, 554
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	2 cut(s)	91, 234
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	398, 625
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	364, 429
SspMI	CTAG	2 cut(s)	75, 143
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	244, 345, 495, 535
TaiI	ACGT	2 cut(s)	351, 444
TaqI	TCGA	2 cut(s)	91, 234
TasI	AATT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	3 cut(s)	247, 348, 538
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	4 cut(s)	157, 179, 310, 365
TspRI	CASTG	3 cut(s)	247, 348, 538
VpaK11BI	GGWCC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	75, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.