FvH4_6g54390

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39723204 .. 39725895
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54390.t1

Sequence Viewer

Length: 1107 bp
ATGGGATGCTCTTGTGAGAGCAGTCCCTCTTTTGCAGGGATTGAAATTGATGATGAAGAACTTGCTCTCTTTGTTGAGCGTGTTGATAAGGATAACAACGGTGTCATAACATTTGAAGAATGGAGAGATTTTCTTCTGCTTTACCCTCAGGAGGCAACCATCGAGAATATTTATCATTATTTGGAAAGAGTATGCCTTGTTGATATTGGGGAGCAGACTGTTACTCCAGAAGTCATGAATAAACATATCCATGCAAGTAGATATCTGATTGCCGGTGCAGTAGCAGGAGCAACATCGCGTACAGCTACTGCTCCTCTTGATCGCTTGAAGGTTGTTTTGCAAGTACAAACTCAACAGGCTCGTATTATGCCTGCAGTTAGAGATATATGGAGACAAGGGGGCTTGCTGGGTTTTTTTCGTGGCAATGGTTTAAATGTCTTCAAGGTGGCTCCTGAAAGCGCCATCAGGTTCTATACTTATGAAATGCTGAAAAGTTATATCCTTCATGCTAATGGTGAAGAAGATAAGGCTAATATTGGGATGACAACTCGCCTTGTTTCCGGTGGTTTAGCAGGTGCTGTGGCACAAGCTGCTATTTATCCCATGGATCTTGTTAAAACACGAATACAAACATATGCTTGCGAAGGTGGAAGAACTCCGAGTGTAGGATCTCTGTCTAAACAAATATGGGTTCAGGAGGGACCCCGGGCATTTTATAGAGGCCTTGTTCCATCTCTACTTGGAATTGTCCCTTATGCTGGCATCGATCTTGCTGCTTATGATACCCTGAAAGACATGTCCAAGAAATATATTCTGCATGACACCGAACCTGGTCCTCTTGTGCAGTTGGGATGTGGGACAGTATCAGGTGCTCTTGGTGCTTCATGTGTTTACCCATTGCAGGTTGTCAGGACAAGAATGCAAGCCCAGCGCATAAACAAAGACTCTGCTTATGAGGGAATGGCTGATGTGTTCAGGAGAACCTTGCAACATGAAGGGTTTAGGGGATTGTACAAGGGAATATTTCCCAATCTCCTTAAAGTAGTTCCCTCTGCGAGTATAACTTACATGGTTTATGAGTCTATGAAGAAGACTTTGGACCTATGA

Protein Analysis

369

Amino Acids

40.7

Weight (kDa)

6.61

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 83 - 169 9.6e-24 Mitochondrial carrier protein
Mito_carr PF00153 181 - 268 2.7e-23 Mitochondrial carrier protein
Mito_carr PF00153 279 - 366 1.2e-26 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 2 cut(s) 563, 892
AccII CGCG 1 cut(s) 298
AclWI GGATC 2 cut(s) 615, 676
AfaI GTAC 3 cut(s) 301, 345, 1013
AfiI CCNNNNNNNGG 4 cut(s) 151, 665, 758, 901
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 4 cut(s) 44, 116, 328, 442
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 1 cut(s) 1079
AluBI AGCT 2 cut(s) 305, 590
AluI AGCT 2 cut(s) 305, 590
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 615, 676
AlwNI CAGNNNCTG 2 cut(s) 308, 578
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 1 cut(s) 721
ApeKI GCWGC 2 cut(s) 590, 773
AspLEI GCGC 2 cut(s) 461, 933
AspS9I GGNCC 3 cut(s) 701, 833, 1099
AsuC2I CCSGG 2 cut(s) 706, 707
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 705
AvaII GGWCC 3 cut(s) 701, 833, 1099
AxyI CCTNAGG 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 430, 1097
Bbv12I GWGCWC 1 cut(s) 874
BbvI GCAGC 2 cut(s) 577, 760
BccI CCATC 3 cut(s) 167, 470, 739
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 1 cut(s) 831
BcnI CCSGG 2 cut(s) 706, 707
BcoDI GTCTC 1 cut(s) 385
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 462
BfuAI ACCTGC 2 cut(s) 563, 892
BisI GCNGC 2 cut(s) 591, 774
BlsI GCNGC 2 cut(s) 592, 775
Bme1390I CCNGG 3 cut(s) 706, 707, 831
Bme18I GGWCC 3 cut(s) 701, 833, 1099
BmeT110I CYCGRG 1 cut(s) 705
BmgT120I GGNCC 3 cut(s) 701, 833, 1099
BmiI GGNNCC 3 cut(s) 450, 702, 703
BmrFI CCNGG 3 cut(s) 706, 707, 831
BmsI GCATC 1 cut(s) 771
BpiI GAAGAC 2 cut(s) 430, 1097
BpmI CTGGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 706, 707
Bsa29I ATCGAT 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 603, 704, 705
BsaWI WCCGGW 1 cut(s) 560
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 665, 758, 901
Bse118I RCCGGY 1 cut(s) 272
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 2 cut(s) 430, 896
BseBI CCWGG 1 cut(s) 831
BseCI ATCGAT 1 cut(s) 765
BseDI CCNNGG 3 cut(s) 603, 704, 705
BseGI GGATG 3 cut(s) 11, 546, 857
BseLI CCNNNNNNNGG 4 cut(s) 151, 665, 758, 901
BseMI GCAATG 2 cut(s) 430, 896
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 577, 760
BseYI CCCAGC 2 cut(s) 406, 927
BsgI GTGCAG 2 cut(s) 297, 863
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 723
BshVI ATCGAT 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 874
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 3 cut(s) 273, 561, 706
BslFI GGGAC 4 cut(s) 9, 714, 734, 871
BslI CCNNNNNNNGG 4 cut(s) 151, 665, 758, 901
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 4 cut(s) 9, 714, 734, 871
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 874
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 4 cut(s) 319, 607, 668, 766
Bsp19I CCATGG 1 cut(s) 603
BspANI GGCC 1 cut(s) 723
BspCNI CTCAG 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 765
BspFNI CGCG 1 cut(s) 298
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 450, 702, 703
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 2 cut(s) 563, 892
BspPI GGATC 2 cut(s) 615, 676
BsrDI GCAATG 2 cut(s) 430, 896
BsrFI RCCGGY 1 cut(s) 272
BsrGI TGTACA 1 cut(s) 1011
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 603, 704, 705
BssMI GATC 4 cut(s) 319, 607, 668, 766
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 3 cut(s) 101, 220, 862
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 1011
BstC8I GCNNGC 5 cut(s) 372, 404, 640, 760, 924
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 11, 546, 857
BstFNI CGCG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 2 cut(s) 461, 933
BstKTI GATC 4 cut(s) 322, 610, 671, 769
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 4 cut(s) 319, 607, 668, 766
BstMWI GCNNNNNNNGC 3 cut(s) 590, 878, 928
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 3 cut(s) 704, 705, 829
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 577, 760
BstV2I GAAGAC 2 cut(s) 430, 1097
BstX2I RGATCY 2 cut(s) 607, 668
BstYI RGATCY 2 cut(s) 607, 668
Bsu15I ATCGAT 1 cut(s) 765
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 723
BsuTUI ATCGAT 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 11, 546, 857
BveI ACCTGC 2 cut(s) 563, 892
Cac8I GCNNGC 5 cut(s) 372, 404, 640, 760, 924
CaiI CAGNNNCTG 2 cut(s) 308, 578
CciI TCATGA 1 cut(s) 234
CfoI GCGC 2 cut(s) 461, 933
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 701, 833, 1099
Cfr9I CCCGGG 1 cut(s) 705
ClaI ATCGAT 1 cut(s) 765
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 3 cut(s) 300, 344, 1012
CviAII CATG 9 cut(s) 235, 251, 506, 604, 796, 818, 885, 992, 1069
CviJI RGCY 9 cut(s) 305, 359, 402, 449, 530, 590, 723, 926, 965
CviKI_1 RGCY 9 cut(s) 305, 359, 402, 449, 530, 590, 723, 926, 965
CviQI GTAC 3 cut(s) 300, 344, 1012
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 321, 609, 670, 768
DpnII GATC 4 cut(s) 319, 607, 668, 766
DraI TTTAAA 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 723
Eco32I GATATC 1 cut(s) 263
Eco47I GGWCC 3 cut(s) 701, 833, 1099
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 829
EcoRV GATATC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 9 cut(s) 238, 254, 509, 607, 799, 821, 888, 995, 1072
FaqI GGGAC 4 cut(s) 9, 714, 734, 871
FatI CATG 9 cut(s) 234, 250, 505, 603, 795, 817, 884, 991, 1068
FauNDI CATATG 1 cut(s) 634
Fnu4HI GCNGC 2 cut(s) 591, 774
FokI GGATG 3 cut(s) 18, 553, 864
Fsp4HI GCNGC 2 cut(s) 591, 774
GlaI GCGC 2 cut(s) 460, 932
GluI GCNGC 2 cut(s) 591, 774
GsaI CCCAGC 2 cut(s) 410, 931
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 723
HapII CCGG 3 cut(s) 273, 561, 706
HhaI GCGC 2 cut(s) 461, 933
Hin1II CATG 9 cut(s) 238, 254, 509, 607, 799, 821, 888, 995, 1072
Hin6I GCGC 2 cut(s) 459, 931
HinP1I GCGC 2 cut(s) 459, 931
HinfI GANTC 2 cut(s) 944, 1079
HpaII CCGG 3 cut(s) 273, 561, 706
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 2 cut(s) 267, 660
Hpy188III TCNNGA 9 cut(s) 149, 163, 227, 235, 317, 452, 695, 910, 976
Hpy8I GTNNAC 1 cut(s) 892
HpyAV CCTTC 4 cut(s) 322, 512, 638, 989
HpyCH4III ACNGT 3 cut(s) 101, 220, 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 878, 928
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 9 cut(s) 238, 254, 509, 607, 799, 821, 888, 995, 1072
HspAI GCGC 2 cut(s) 459, 931
KflI GGGWCCC 1 cut(s) 701
Kzo9I GATC 4 cut(s) 319, 607, 668, 766
LmnI GCTCC 4 cut(s) 211, 287, 316, 454
Lsp1109I GCAGC 2 cut(s) 577, 760
LweI GCATC 1 cut(s) 771
MabI ACCWGGT 1 cut(s) 829
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 321, 609, 670, 768
MboI GATC 4 cut(s) 319, 607, 668, 766
MboII GAAGA 9 cut(s) 68, 125, 128, 430, 530, 533, 663, 1099, 1102
MflI RGATCY 2 cut(s) 607, 668
MhlI GDGCHC 1 cut(s) 874
MluCI AATT 2 cut(s) 45, 744
MlyI GAGTC 2 cut(s) 938, 1088
MnlI CCTC 9 cut(s) 37, 145, 156, 324, 691, 713, 846, 949, 1060
MseI TTAA 3 cut(s) 431, 615, 1038
MslI CAYNNNNRTG 2 cut(s) 249, 510
MspI CCGG 3 cut(s) 273, 561, 706
MspR9I CCNGG 3 cut(s) 706, 707, 831
Mva1269I GAATGC 1 cut(s) 924
MvaI CCWGG 1 cut(s) 831
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 3 cut(s) 590, 878, 928
NciI CCSGG 2 cut(s) 706, 707
NcoI CCATGG 1 cut(s) 603
NdeI CATATG 1 cut(s) 634
NdeII GATC 4 cut(s) 319, 607, 668, 766
NlaIII CATG 9 cut(s) 238, 254, 509, 607, 799, 821, 888, 995, 1072
NlaIV GGNNCC 3 cut(s) 450, 702, 703
NspI RCATGY 1 cut(s) 799
PagI TCATGA 1 cut(s) 234
PaqCI CACCTGC 1 cut(s) 563
PceI AGGCCT 1 cut(s) 723
PciI ACATGT 1 cut(s) 795
PctI GAATGC 1 cut(s) 924
PkrI GCNGC 2 cut(s) 592, 775
PleI GAGTC 2 cut(s) 938, 1087
PpsI GAGTC 2 cut(s) 938, 1087
PpuMI RGGWCCY 1 cut(s) 701
PscI ACATGT 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 829
PspFI CCCAGC 2 cut(s) 406, 927
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 3 cut(s) 450, 702, 703
PspPI GGNCC 3 cut(s) 701, 833, 1099
PspPPI RGGWCCY 1 cut(s) 701
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 2 cut(s) 308, 578
PsuI RGATCY 2 cut(s) 607, 668
RsaI GTAC 3 cut(s) 301, 345, 1013
RsaNI GTAC 3 cut(s) 300, 344, 1012
RseI CAYNNNNRTG 2 cut(s) 249, 510
SaqAI TTAA 3 cut(s) 431, 615, 1038
SatI GCNGC 2 cut(s) 591, 774
Sau3AI GATC 4 cut(s) 319, 607, 668, 766
Sau96I GGNCC 3 cut(s) 701, 833, 1099
SchI GAGTC 2 cut(s) 938, 1088
ScrFI CCNGG 3 cut(s) 706, 707, 831
SduI GDGCHC 1 cut(s) 874
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 1 cut(s) 771
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 3 cut(s) 701, 833, 1099
SmaI CCCGGG 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 249, 510
Sse9I AATT 2 cut(s) 45, 744
SseBI AGGCCT 1 cut(s) 723
SspI AATATT 3 cut(s) 169, 535, 1023
StuI AGGCCT 1 cut(s) 723
StyD4I CCNGG 3 cut(s) 704, 705, 829
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 3 cut(s) 101, 220, 862
TaqI TCGA 2 cut(s) 162, 765
TasI AATT 2 cut(s) 45, 744
TatI WGTACW 2 cut(s) 343, 1011
Tru1I TTAA 3 cut(s) 431, 615, 1038
Tru9I TTAA 3 cut(s) 431, 615, 1038
TseI GCWGC 2 cut(s) 590, 773
TspDTI ATGAA 7 cut(s) 69, 251, 494, 495, 873, 1008, 1100
TspMI CCCGGG 1 cut(s) 705
VpaK11BI GGWCC 3 cut(s) 701, 833, 1099
XceI RCATGY 1 cut(s) 799
XmaI CCCGGG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.