Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000767

Physical Location & Seq

Genomic Coordinates Reverse (-)

71750239 .. 71751322

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0596900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGTTTTTCAAAAAAGCCAAGGTCGTACGTTTCCGGAGCCACCACAACAAGTACCTATTAGCCGGCGACGACGAAGAGTCCGTTTGGCAAGAGCGTGAGGGACACGTGAGGAACGCAAGATGGAAGGTGGAGATCAACGAGAGCGGAACAGCCATACGTCTGAAGAGCTGTTATGGAAAGTACTTAACGGCGTCAAACACGCCGGGACGACTGGGAATGAAGAGCAAGAAAGTGGTGCAGACGCTGCCAGAGACGTTGGATTCGACCGTTGAGTGGGAGCCAATCAGAGAAGGGTTCAAGGTGAGGCTGAAGATGGCAGGCCATGGCCAGTTTTTGAGAGCCAATGGGGGTGTGCCACCGTGGCGCAACTCCATCACGCATGATACTGCTCACCGGAGCGCGGCAAAGGTATGGGGGTTGTGGGATGTGGACGTGGTGGAGATAGCCATGGATCAACTTCCGGCCCCACCGAAGAAAACAAAGCCGGATGGTGGTGATTCGCAACAACCGGACGCTCCGTCGGAGATTGACATGACATGGTCGGCGCCGAAACAAAATTCAGATAGTAAAGAGAGAAAAATAGGCCGTGGAGTAGTTAGAACCAATGATCTATACTCTTGCTTTTCCATGTGTACTTGTCCAACAGTTTATGATGAGAAAGGATCAAAACAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8 Mito_carr

Protein Analysis

226

Amino Acids

25.51

Weight (kDa)

9.2

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 142	2.4e-59	Beta-trefoil domain of unknown function (DUF569)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07320 AT5G51050 AT5G61810 AT5G61810
fragaria_vesca	FvH4_5g09810 FvH4_5g09810 FvH4_5g09810 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390
malus_domestica	MD00G1075800.v1.1 MD14G1145100.v1.1 MD17G1005800.v1.1
prunus_persica	Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1
pyrus_communis	pycom06g11980 pycom111g00140 pycom17g00150
rosa_chinensis	RchiOBHm_Chr2g0176621 RchiOBHm_Chr7g0188421
rosa_laevigata	RLG00000004696 RLG00000022430
rosa_multiflora	Rmu_sc0000952.1_g000002 Rmu_sc0001417.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076260 Rroxscaffold_3G00266430
rosa_rugosa	Rorug02G0596400 Rorug02G0596500 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596700 Rorug02G0596800 Rorug02G0596900 Rorug06G0490400 Rorug06G0490400
rosa_samantha	Rh2AG674500 Rh2BG685600 Rh2CG648900 Rh2DG699800 Rh7AG095100 Rh7BG096600 Rh7CG097300 Rh7DG096800
rosa_wichuraiana	Rw0G015640 Rw2G055350 Rw7G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	547
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	2 cut(s)	147, 404
AclWI	GGATC	2 cut(s)	462, 673
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	185, 332
AcvI	CACGTG	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	194, 548
AfaI	GTAC	4 cut(s)	30, 56, 185, 637
AfiI	CCNNNNNNNGG	3 cut(s)	276, 403, 494
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	13, 301
AhdI	GACNNNNNGTC	2 cut(s)	79, 520
AjiI	CACGTC	1 cut(s)	436
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	462, 673
AlwNI	CAGNNNCTG	1 cut(s)	247
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	4 cut(s)	322, 328, 465, 586
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	559
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	3 cut(s)	369, 404, 550
AspS9I	GGNCC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	316, 386, 509
BalI	TGGCCA	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	547
BbrPI	CACGTG	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	4 cut(s)	117, 310, 383, 485
BceAI	ACGGC	2 cut(s)	207, 573
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	364
BisI	GCNGC	2 cut(s)	248, 405
BlsI	GCNGC	2 cut(s)	249, 406
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	207
BmeRI	GACNNNNNGTC	2 cut(s)	79, 520
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	4 cut(s)	41, 282, 468, 549
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	109
BsaHI	GRCGYC	2 cut(s)	194, 548
BsaJI	CCNNGG	5 cut(s)	21, 325, 362, 450, 589
BsaWI	WCCGGW	3 cut(s)	36, 396, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 403, 494
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	219, 331
BseAI	TCCGGA	1 cut(s)	36
BseDI	CCNNGG	5 cut(s)	21, 325, 362, 450, 589
BseGI	GGATG	2 cut(s)	433, 496
BseLI	CCNNNNNNNGG	3 cut(s)	276, 403, 494
BseNI	ACTGG	2 cut(s)	219, 331
BseXI	GCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	404
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	4 cut(s)	324, 330, 467, 588
BshNI	GGYRCC	1 cut(s)	547
BsiEI	CGRYCG	1 cut(s)	270
BsiSI	CCGG	7 cut(s)	37, 66, 206, 397, 464, 488, 512
BsiWI	CGTACG	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	117, 222
BslI	CCNNNNNNNGG	3 cut(s)	276, 403, 494
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	117, 222
BsnI	GGCC	4 cut(s)	324, 330, 467, 588
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	135, 454, 610, 665
Bsp19I	CCATGG	2 cut(s)	325, 450
BspACI	CCGC	2 cut(s)	147, 404
BspANI	GGCC	4 cut(s)	324, 330, 467, 588
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	4 cut(s)	41, 282, 468, 549
BspPI	GGATC	2 cut(s)	462, 673
BspQI	GCTCTTC	2 cut(s)	161, 218
BspT107I	GGYRCC	1 cut(s)	547
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	219, 331
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	5 cut(s)	21, 325, 362, 450, 589
BssMI	GATC	4 cut(s)	135, 454, 610, 665
BssNI	GRCGYC	2 cut(s)	194, 548
BssT1I	CCWWGG	3 cut(s)	21, 325, 450
Bst4CI	ACNGT	3 cut(s)	271, 363, 649
Bst6I	CTCTTC	3 cut(s)	72, 161, 218
BstACI	GRCGYC	2 cut(s)	194, 548
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	67, 322
BstDSI	CCRYGG	4 cut(s)	325, 362, 450, 589
BstF5I	GGATG	2 cut(s)	433, 496
BstFNI	CGCG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	3 cut(s)	369, 404, 550
BstKTI	GATC	4 cut(s)	138, 457, 613, 668
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	135, 454, 610, 665
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 364
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	324, 330, 467, 588
BtgI	CCRYGG	4 cut(s)	325, 362, 450, 589
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	433, 496
Cac8I	GCNNGC	2 cut(s)	67, 322
CaiI	CAGNNNCTG	1 cut(s)	247
CfoI	GCGC	3 cut(s)	369, 404, 550
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	466
CseI	GACGC	3 cut(s)	183, 253, 524
Csp6I	GTAC	4 cut(s)	29, 55, 184, 636
CviAII	CATG	6 cut(s)	326, 383, 451, 535, 540, 631
CviQI	GTAC	4 cut(s)	29, 55, 184, 636
DinI	GGCGCC	1 cut(s)	549
DpnI	GATC	4 cut(s)	137, 456, 612, 667
DpnII	GATC	4 cut(s)	135, 454, 610, 665
DriI	GACNNNNNGTC	2 cut(s)	79, 520
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	3 cut(s)	72, 161, 218
Eam1105I	GACNNNNNGTC	2 cut(s)	79, 520
EarI	CTCTTC	3 cut(s)	72, 161, 218
Eco130I	CCWWGG	3 cut(s)	21, 325, 450
Eco57I	CTGAAG	2 cut(s)	185, 332
Eco72I	CACGTG	1 cut(s)	109
EcoT14I	CCWWGG	3 cut(s)	21, 325, 450
EgeI	GGCGCC	1 cut(s)	549
EheI	GGCGCC	1 cut(s)	549
ErhI	CCWWGG	3 cut(s)	21, 325, 450
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	6 cut(s)	329, 386, 454, 538, 543, 634
FaqI	GGGAC	2 cut(s)	117, 222
FatI	CATG	6 cut(s)	325, 382, 450, 534, 539, 630
Fnu4HI	GCNGC	2 cut(s)	248, 405
FokI	GGATG	2 cut(s)	440, 503
Fsp4HI	GCNGC	2 cut(s)	248, 405
GlaI	GCGC	3 cut(s)	368, 403, 549
GluI	GCNGC	2 cut(s)	248, 405
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	4 cut(s)	324, 330, 467, 588
HapII	CCGG	7 cut(s)	37, 66, 206, 397, 464, 488, 512
HgaI	GACGC	3 cut(s)	183, 253, 524
HhaI	GCGC	3 cut(s)	369, 404, 550
Hin1I	GRCGYC	2 cut(s)	194, 548
Hin1II	CATG	6 cut(s)	329, 386, 454, 538, 543, 634
Hin6I	GCGC	3 cut(s)	367, 402, 548
HinP1I	GCGC	3 cut(s)	367, 402, 548
HinfI	GANTC	3 cut(s)	80, 263, 500
HpaII	CCGG	7 cut(s)	37, 66, 206, 397, 464, 488, 512
HphI	GGTGA	3 cut(s)	316, 386, 509
Hpy166II	GTNNAC	2 cut(s)	433, 636
Hpy188I	TCNGA	4 cut(s)	165, 290, 526, 565
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	2 cut(s)	433, 636
Hpy99I	CGWCG	3 cut(s)	74, 77, 526
HpyAV	CCTTC	2 cut(s)	121, 287
HpyCH4III	ACNGT	3 cut(s)	271, 363, 649
HpyCH4IV	ACGT	5 cut(s)	31, 108, 160, 257, 435
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 364
HpySE526I	ACGT	5 cut(s)	31, 108, 160, 257, 435
Hsp92I	GRCGYC	2 cut(s)	194, 548
Hsp92II	CATG	6 cut(s)	329, 386, 454, 538, 543, 634
HspAI	GCGC	3 cut(s)	367, 402, 548
KasI	GGCGCC	1 cut(s)	547
Kpn2I	TCCGGA	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	135, 454, 610, 665
LguI	GCTCTTC	2 cut(s)	161, 218
LmnI	GCTCC	4 cut(s)	39, 280, 399, 523
Lsp1109I	GCAGC	1 cut(s)	234
MaeII	ACGT	5 cut(s)	31, 108, 160, 257, 435
MalI	GATC	4 cut(s)	137, 456, 612, 667
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	4 cut(s)	135, 454, 610, 665
MboII	GAAGA	5 cut(s)	89, 178, 235, 325, 487
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	1 cut(s)	559
MluNI	TGGCCA	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	3 cut(s)	240, 504, 668
MnlI	CCTC	3 cut(s)	94, 105, 300
Mox20I	TGGCCA	1 cut(s)	330
MroI	TCCGGA	1 cut(s)	36
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	2 cut(s)	188, 679
Msp20I	TGGCCA	1 cut(s)	330
MspI	CCGG	7 cut(s)	37, 66, 206, 397, 464, 488, 512
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	247, 364
NaeI	GCCGGC	1 cut(s)	67
NarI	GGCGCC	1 cut(s)	548
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	2 cut(s)	325, 450
NdeII	GATC	4 cut(s)	135, 454, 610, 665
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	6 cut(s)	329, 386, 454, 538, 543, 634
NlaIV	GGNNCC	4 cut(s)	41, 282, 468, 549
PciSI	GCTCTTC	2 cut(s)	161, 218
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 263
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	263, 500
Pfl23II	CGTACG	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	249, 406
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	551
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	109
PspCI	CACGTG	1 cut(s)	109
PspLI	CGTACG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	41, 282, 468, 549
PspPI	GGNCC	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	541
RsaI	GTAC	4 cut(s)	30, 56, 185, 637
RsaNI	GTAC	4 cut(s)	29, 55, 184, 636
SapI	GCTCTTC	2 cut(s)	161, 218
SaqAI	TTAA	2 cut(s)	188, 679
SatI	GCNGC	2 cut(s)	248, 405
Sau3AI	GATC	4 cut(s)	135, 454, 610, 665
Sau96I	GGNCC	1 cut(s)	466
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	207
SfoI	GGCGCC	1 cut(s)	549
Sse9I	AATT	1 cut(s)	559
SsiI	CCGC	2 cut(s)	147, 404
SspDI	GGCGCC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	3 cut(s)	21, 325, 450
TaaI	ACNGT	3 cut(s)	271, 363, 649
TaiI	ACGT	5 cut(s)	34, 111, 163, 260, 438
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	559
TatI	WGTACW	2 cut(s)	183, 635
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	263, 500
Tru1I	TTAA	2 cut(s)	188, 679
Tru9I	TTAA	2 cut(s)	188, 679
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	2 cut(s)	73, 510
Tth111I	GACNNNGTC	1 cut(s)	541
XapI	RAATTY	1 cut(s)	559
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.