Rroxscaffold_2G00076260

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
173152 .. 174659
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076260.1

Sequence Viewer

Length: 1191 bp
ATGGAGGCAAAACCAAGCAAGGAAAAGCCATCAAATCCGGTAGACAAAGTGACGATGGATCATGTGCTTTTGGCACTCGGAGAGACTAAGGAACAGAGGGAGCTCAGAATTCGTAATCTGTTCAACTTGTTTGACACTGCAAATGCTGGGCCTCTCTGCCCTCAAGATACCCCCGAGTACAAGTTTGCCAAGGATCTGTTAAATGTGTGTGATGCAAATCGAGATGGTCGTGTGGATTACCAAGATTTTAAGCATTACATGGACGATAAAGAGCTCGAGCTCTATGCCATCTTTCAGGCAATAGATGTGAAACACAATGGTTGCATCCTGCCTGAAGAGCTATGGGATGCACTTGTAAGAGCAGGGATTGAAATTGATGATGAGGAACTTGCCCTCTTTGTTGAGCGTGTTGACAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGAGATTTTCTTCTGCTTTACCCTCAGGAGGCAACCATCGAGAATATTTATCATTATTTGGAAAGGGTATGCCTTGTTGATATTGGGGAGCAGACTGTTACTCCAGAAGTCATGAGTAAACATATCCATGCAAGTAGATATTTGATTGCCGGTGCAGTAGCAGGAGCAACATCGCGTACAGCTACCGCTCCTCTTGATCGCTTGAAGGTTGTTTTGCAAGTACAGACACAACAAGCTCGTATTATGCCTGCAGTAAGGGATATATGGAGACAAGGGGGCATGCTGGGCTTTTTTCGTGGCAATGGTTTAAATGTCTTCAAGGTGGCTCCTGAAAGTGCCATCAGGTTCTATACTTATGAAATGCTGAAAAGTTATATTCTCCATGCTAATGGTGAAGAAGATAAGGCTAATATTGGGATGACAATTCGCCTTGTTTCCGGTGGTTTAGCAGGTGCTGTGGCACAAGCTGCTATTTATCCCATGGATCTTGTTAAAACACGAATACAAACTTATGCTGGCGAAGTTGGAAGAACTCCAAGTCTTGGATCTCTGTCTAAAGAAATATGGGTTCAGGAGGGACCCCGGGCATTTTATAGAGGCCTTGTTCCATCTCTACTGGGGATTATCCCTTATGCTGGCATCGATCTTGCTGCTTATGATACCTTGAAAGACATGTCCAAGAAATATATTCTGCATGACAGCGGTGAGGATTTCATTTGTATATCAGCATCATTACTTTAA

Protein Analysis

396

Amino Acids

44.46

Weight (kDa)

5.14

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 93 - 149 6.5e-11 EF-hand domain pair
Mito_carr PF00153 192 - 278 1.4e-23 Mitochondrial carrier protein
Mito_carr PF00153 290 - 377 7.7e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AarI CACCTGC 1 cut(s) 890
Acc36I ACCTGC 1 cut(s) 890
AccB7I CCANNNNNTGG 1 cut(s) 992
AccBSI CCGCTC 1 cut(s) 638
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 625
AciI CCGC 2 cut(s) 636, 1152
AclWI GGATC 4 cut(s) 66, 201, 942, 1003
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 3 cut(s) 179, 628, 672
AfiI CCNNNNNNNGG 3 cut(s) 478, 992, 1085
AflIII ACRYGT 1 cut(s) 1122
AgsI TTSAA 6 cut(s) 124, 371, 443, 655, 769, 1117
AluBI AGCT 7 cut(s) 103, 274, 280, 340, 632, 686, 917
AluI AGCT 7 cut(s) 103, 274, 280, 340, 632, 686, 917
Alw21I GWGCWC 3 cut(s) 105, 276, 282
Alw26I GTCTC 2 cut(s) 77, 712
AlwI GGATC 4 cut(s) 66, 201, 942, 1003
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 3 cut(s) 173, 275, 1032
AoxI GGCC 2 cut(s) 149, 1048
ApeKI GCWGC 2 cut(s) 917, 1100
ApoI RAATTY 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 149, 1028
AsuC2I CCSGG 2 cut(s) 1033, 1034
AsuHPI GGTGA 2 cut(s) 854, 1166
AvaI CYCGRG 3 cut(s) 173, 275, 1032
AvaII GGWCC 1 cut(s) 1028
AxyI CCTNAGG 1 cut(s) 474
BanII GRGCYC 3 cut(s) 105, 276, 282
BbsI GAAGAC 1 cut(s) 757
Bbv12I GWGCWC 3 cut(s) 105, 276, 282
BbvI GCAGC 2 cut(s) 904, 1087
BccI CCATC 7 cut(s) 37, 49, 218, 296, 494, 797, 1066
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 1082, 1116
BcnI CCSGG 2 cut(s) 1033, 1034
BcoDI GTCTC 2 cut(s) 77, 712
BfmI CTRYAG 1 cut(s) 699
BfuAI ACCTGC 1 cut(s) 890
BisI GCNGC 2 cut(s) 918, 1101
BlsI GCNGC 2 cut(s) 919, 1102
Bme1390I CCNGG 2 cut(s) 1033, 1034
Bme18I GGWCC 1 cut(s) 1028
BmeT110I CYCGRG 3 cut(s) 173, 275, 1032
BmgT120I GGNCC 2 cut(s) 149, 1028
BmiI GGNNCC 3 cut(s) 777, 1029, 1030
BmrFI CCNGG 2 cut(s) 1033, 1034
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 5 cut(s) 202, 333, 337, 1098, 1187
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 1 cut(s) 757
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 147
BpuMI CCSGG 2 cut(s) 1033, 1034
Bsa29I ATCGAT 1 cut(s) 1092
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 4 cut(s) 189, 930, 1031, 1032
BsaWI WCCGGW 2 cut(s) 37, 887
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 992, 1085
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 1 cut(s) 1071
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 757
Bse8I GATNNNNATC 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 1092
BseDI CCNNGG 4 cut(s) 189, 930, 1031, 1032
BseGI GGATG 3 cut(s) 324, 352, 873
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 3 cut(s) 478, 992, 1085
BseMI GCAATG 1 cut(s) 757
BseMII CTCAG 2 cut(s) 118, 488
BseNI ACTGG 1 cut(s) 1071
BseRI GAGGAG 1 cut(s) 630
BseXI GCAGC 2 cut(s) 904, 1087
BseYI CCCAGC 2 cut(s) 146, 733
BsgI GTGCAG 1 cut(s) 624
Bsh1236I CGCG 1 cut(s) 625
BshFI GGCC 2 cut(s) 151, 1050
BshVI ATCGAT 1 cut(s) 1092
BsiHKAI GWGCWC 3 cut(s) 105, 276, 282
BsiHKCI CYCGRG 3 cut(s) 173, 275, 1032
BsiSI CCGG 4 cut(s) 38, 600, 888, 1033
BslFI GGGAC 1 cut(s) 1041
BslI CCNNNNNNNGG 3 cut(s) 478, 992, 1085
BsmAI GTCTC 2 cut(s) 77, 712
BsmFI GGGAC 1 cut(s) 1041
BsnI GGCC 2 cut(s) 151, 1050
BsoBI CYCGRG 3 cut(s) 173, 275, 1032
Bsp1286I GDGCHC 3 cut(s) 105, 276, 282
Bsp143I GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 2 cut(s) 636, 1152
BspANI GGCC 2 cut(s) 151, 1050
BspCNI CTCAG 2 cut(s) 117, 487
BspDI ATCGAT 1 cut(s) 1092
BspFNI CGCG 1 cut(s) 625
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 3 cut(s) 777, 1029, 1030
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 4 cut(s) 66, 201, 942, 1003
BspQI GCTCTTC 1 cut(s) 330
BsrBI CCGCTC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 757
BsrFI RCCGGY 1 cut(s) 599
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 4 cut(s) 189, 930, 1031, 1032
BssMI GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
BssT1I CCWWGG 2 cut(s) 189, 930
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 917
BstC8I GCNNGC 4 cut(s) 699, 731, 967, 1087
BstDEI CTNAG 3 cut(s) 87, 104, 474
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 3 cut(s) 324, 352, 873
BstFNI CGCG 1 cut(s) 625
BstKTI GATC 6 cut(s) 61, 196, 649, 937, 998, 1096
BstMAI GTCTC 2 cut(s) 77, 712
BstMBI GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 337, 735, 917
BstNSI RCATGY 2 cut(s) 733, 1126
BstSCI CCNGG 2 cut(s) 1031, 1032
BstSFI CTRYAG 1 cut(s) 699
BstUI CGCG 1 cut(s) 625
BstV1I GCAGC 2 cut(s) 904, 1087
BstV2I GAAGAC 1 cut(s) 757
BstX2I RGATCY 3 cut(s) 193, 934, 995
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 3 cut(s) 193, 934, 995
Bsu15I ATCGAT 1 cut(s) 1092
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 2 cut(s) 151, 1050
BsuTUI ATCGAT 1 cut(s) 1092
BtgI CCRYGG 1 cut(s) 930
BtgZI GCGATG 1 cut(s) 606
BtsCI GGATG 3 cut(s) 324, 352, 873
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 4 cut(s) 699, 731, 967, 1087
CaiI CAGNNNCTG 1 cut(s) 905
CciI TCATGA 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 149, 1028
Cfr9I CCCGGG 1 cut(s) 1032
ClaI ATCGAT 1 cut(s) 1092
Csp6I GTAC 3 cut(s) 178, 627, 671
CviAII CATG 9 cut(s) 62, 259, 562, 578, 730, 833, 931, 1123, 1145
CviQI GTAC 3 cut(s) 178, 627, 671
DdeI CTNAG 3 cut(s) 87, 104, 474
DpnI GATC 6 cut(s) 60, 195, 648, 936, 997, 1095
DpnII GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
DraI TTTAAA 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Ecl136II GAGCTC 3 cut(s) 103, 274, 280
Eco130I CCWWGG 2 cut(s) 189, 930
Eco147I AGGCCT 1 cut(s) 1050
Eco24I GRGCYC 3 cut(s) 105, 276, 282
Eco47I GGWCC 1 cut(s) 1028
Eco53kI GAGCTC 3 cut(s) 103, 274, 280
Eco57I CTGAAG 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 474
Eco88I CYCGRG 3 cut(s) 173, 275, 1032
EcoICRI GAGCTC 3 cut(s) 103, 274, 280
EcoO109I RGGNCCY 1 cut(s) 1028
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 189, 930
EcoT38I GRGCYC 3 cut(s) 105, 276, 282
ErhI CCWWGG 2 cut(s) 189, 930
FaeI CATG 9 cut(s) 65, 262, 565, 581, 733, 836, 934, 1126, 1148
FaqI GGGAC 1 cut(s) 1041
FatI CATG 9 cut(s) 61, 258, 561, 577, 729, 832, 930, 1122, 1144
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 918, 1101
FokI GGATG 3 cut(s) 311, 359, 880
FriOI GRGCYC 3 cut(s) 105, 276, 282
Fsp4HI GCNGC 2 cut(s) 918, 1101
GluI GCNGC 2 cut(s) 918, 1101
GsaI CCCAGC 2 cut(s) 150, 737
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 151, 1050
HapII CCGG 4 cut(s) 38, 600, 888, 1033
Hin1II CATG 9 cut(s) 65, 262, 565, 581, 733, 836, 934, 1126, 1148
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HpaII CCGG 4 cut(s) 38, 600, 888, 1033
HphI GGTGA 2 cut(s) 854, 1166
Hpy166II GTNNAC 3 cut(s) 43, 412, 569
Hpy188I TCNGA 2 cut(s) 80, 107
Hpy188III TCNNGA 9 cut(s) 164, 221, 476, 490, 554, 562, 644, 779, 1022
Hpy8I GTNNAC 3 cut(s) 43, 412, 569
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4V TGCA 9 cut(s) 140, 215, 324, 350, 581, 605, 667, 701, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 337, 735, 917
HpyF3I CTNAG 3 cut(s) 87, 104, 474
Hsp92II CATG 9 cut(s) 65, 262, 565, 581, 733, 836, 934, 1126, 1148
KflI GGGWCCC 1 cut(s) 1028
Kzo9I GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 5 cut(s) 100, 538, 614, 643, 781
Lsp1109I GCAGC 2 cut(s) 904, 1087
LweI GCATC 5 cut(s) 202, 333, 337, 1098, 1187
MaeIII GTNAC 2 cut(s) 49, 547
MalI GATC 6 cut(s) 60, 195, 648, 936, 997, 1095
MbiI CCGCTC 1 cut(s) 638
MboI GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
MboII GAAGA 7 cut(s) 347, 452, 455, 757, 857, 860, 990
MflI RGATCY 3 cut(s) 193, 934, 995
MhlI GDGCHC 3 cut(s) 105, 276, 282
MluCI AATT 3 cut(s) 108, 372, 873
MmeI TCCRAC 1 cut(s) 955
MseI TTAA 5 cut(s) 200, 249, 758, 942, 1189
MslI CAYNNNNRTG 2 cut(s) 576, 837
MspA1I CMGCKG 1 cut(s) 1152
MspI CCGG 4 cut(s) 38, 600, 888, 1033
MspR9I CCNGG 2 cut(s) 1033, 1034
MvnI CGCG 1 cut(s) 625
MwoI GCNNNNNNNGC 3 cut(s) 337, 735, 917
NciI CCSGG 2 cut(s) 1033, 1034
NcoI CCATGG 1 cut(s) 930
NdeII GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
NlaIII CATG 9 cut(s) 65, 262, 565, 581, 733, 836, 934, 1126, 1148
NlaIV GGNNCC 3 cut(s) 777, 1029, 1030
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 2 cut(s) 733, 1126
PaeI GCATGC 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 275
PagI TCATGA 1 cut(s) 561
PaqCI CACCTGC 1 cut(s) 890
PceI AGGCCT 1 cut(s) 1050
PciI ACATGT 1 cut(s) 1122
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 992
PkrI GCNGC 2 cut(s) 919, 1102
PpuMI RGGWCCY 1 cut(s) 1028
PscI ACATGT 1 cut(s) 1122
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 3 cut(s) 105, 276, 282
Psp5II RGGWCCY 1 cut(s) 1028
PspFI CCCAGC 2 cut(s) 146, 733
PspN4I GGNNCC 3 cut(s) 777, 1029, 1030
PspPI GGNCC 2 cut(s) 149, 1028
PspPPI RGGWCCY 1 cut(s) 1028
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 3 cut(s) 193, 934, 995
RsaI GTAC 3 cut(s) 179, 628, 672
RsaNI GTAC 3 cut(s) 178, 627, 671
RseI CAYNNNNRTG 2 cut(s) 576, 837
SacI GAGCTC 3 cut(s) 105, 276, 282
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 5 cut(s) 200, 249, 758, 942, 1189
SatI GCNGC 2 cut(s) 918, 1101
Sau3AI GATC 6 cut(s) 58, 193, 646, 934, 995, 1093
Sau96I GGNCC 2 cut(s) 149, 1028
ScrFI CCNGG 2 cut(s) 1033, 1034
SduI GDGCHC 3 cut(s) 105, 276, 282
SfaNI GCATC 5 cut(s) 202, 333, 337, 1098, 1187
SfcI CTRYAG 1 cut(s) 699
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 1028
SlaI CTCGAG 1 cut(s) 275
SmaI CCCGGG 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 576, 837
SmlI CTYRAG 2 cut(s) 162, 275
SmoI CTYRAG 2 cut(s) 162, 275
SphI GCATGC 1 cut(s) 733
Sse9I AATT 3 cut(s) 108, 372, 873
SseBI AGGCCT 1 cut(s) 1050
SsiI CCGC 2 cut(s) 636, 1152
SspI AATATT 2 cut(s) 496, 862
SstI GAGCTC 3 cut(s) 105, 276, 282
StuI AGGCCT 1 cut(s) 1050
StyD4I CCNGG 2 cut(s) 1031, 1032
StyI CCWWGG 2 cut(s) 189, 930
TaaI ACNGT 1 cut(s) 547
TaqI TCGA 4 cut(s) 220, 276, 489, 1092
TasI AATT 3 cut(s) 108, 372, 873
TatI WGTACW 2 cut(s) 177, 670
Tru1I TTAA 5 cut(s) 200, 249, 758, 942, 1189
Tru9I TTAA 5 cut(s) 200, 249, 758, 942, 1189
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 917, 1100
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 822, 1153
TspMI CCCGGG 1 cut(s) 1032
TspRI CASTG 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 992
VpaK11BI GGWCC 1 cut(s) 1028
XapI RAATTY 1 cut(s) 108
XceI RCATGY 2 cut(s) 733, 1126
XhoI CTCGAG 1 cut(s) 275
XmaI CCCGGG 1 cut(s) 1032
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.