Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000767

Physical Location & Seq

Genomic Coordinates Reverse (-)

8112280 .. 8116895

Gene Structure 4616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATGATGAGGAACTTGCTCATTTTGTGGAGCATGTTGACAAGGATAACAATGGAATTATAACTTTTGAGGAATGGAGAGATTTTCTGCTGCTTTATCCGCATGAAGCAACTATTGAGAACATATATCATCACTGGGAAAGGGTATGCCTTGTGGACATTGGAGAACAGGCTGTTATTCCAGAAGGTATCAGTAAGCATGTTCATAGGAGTAGATACTTTATTGCAGGGGCTATAGCAGGAGCTGCTTCTCGTACTGCTACTGCTCCTCTTGATCGGTTGAAGGTGGTTTTGCAAGTTCAGACATCACGTGCATCTGTTGTGCCTGCAATAAGGAAGATATTTAAGGAAGATGGATTTTTGGGGTTTTTCCGAGGTAATGGAATAAATGTTGTGAAGGTGGCACCTGAAAGTGCCATCAAGTTCTATACGTATGAATTGTTAAAAAATGTTATTGGAGAAACTATGGGGGAGAACAAGGATGATATTGGTACCGCGGGTAGACTTTTGGCTGGTGGTATGGCAGGTGCCGTGGCACAAACTGCTATATACCCACTGGATCTTGTGAAGACTCGGTTACAGACTTGTGCTTCAGAAGCTGGAAAGGGTCCTAAATTGGGGATACTGACCAAGGAAATTTTGACTCATGAGGGACCACGGGCCTTCTATAAAGGACTACTACCATCTCTTCTTGGGATTGTCCCCTATGCTGGCATTGACCTGGCTGCCTATGAGACCTTAAAAGATATGTCAAAGACATATTTTCTTCATGATAATAGTGGTAGGATTCTCTCTCTTTTTTTTTCTTTTCTTTTCTGGCAACTGTTTGGTATATTTTCACTCCTTTACTTGTTTTCCTGTTTGTATTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8 Mito_carr

Protein Analysis

291

Amino Acids

32.46

Weight (kDa)

6.15

Isoelectric Point (pI)

27.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	71 - 153	7.1e-25	Mitochondrial carrier protein
Mito_carr	PF00153	165 - 252	8.8e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07320 AT5G51050 AT5G61810 AT5G61810
fragaria_vesca	FvH4_5g09810 FvH4_5g09810 FvH4_5g09810 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390
malus_domestica	MD00G1075800.v1.1 MD14G1145100.v1.1 MD17G1005800.v1.1
prunus_persica	Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1
pyrus_communis	pycom06g11980 pycom111g00140 pycom17g00150
rosa_chinensis	RchiOBHm_Chr2g0176621 RchiOBHm_Chr7g0188421
rosa_laevigata	RLG00000004696 RLG00000022430
rosa_multiflora	Rmu_sc0000952.1_g000002 Rmu_sc0001417.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076260 Rroxscaffold_3G00266430
rosa_rugosa	Rorug02G0596400 Rorug02G0596500 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596700 Rorug02G0596800 Rorug02G0596900 Rorug06G0490400 Rorug06G0490400
rosa_samantha	Rh2AG674500 Rh2BG685600 Rh2CG648900 Rh2DG699800 Rh7AG095100 Rh7BG096600 Rh7CG097300 Rh7DG096800
rosa_wichuraiana	Rw0G015640 Rw2G055350 Rw7G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	491
AccB1I	GGYRCC	3 cut(s)	403, 491, 527
AccI	GTMKAC	1 cut(s)	502
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	101, 495, 497
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	636
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	256, 493
AfiI	CCNNNNNNNGG	2 cut(s)	617, 710
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	2 cut(s)	245, 599
AluI	AGCT	2 cut(s)	245, 599
Alw26I	GTCTC	1 cut(s)	728
AlwI	GGATC	1 cut(s)	567
AlwNI	CAGNNNCTG	2 cut(s)	245, 599
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	3 cut(s)	91, 245, 725
ApoI	RAATTY	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	491
AspS9I	GGNCC	3 cut(s)	608, 653, 660
AvaII	GGWCC	2 cut(s)	608, 653
BanI	GGYRCC	3 cut(s)	403, 491, 527
BbrPI	CACGTG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	78, 232, 712
BccI	CCATC	3 cut(s)	347, 425, 691
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	722
BciVI	GTATCC	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	615
BisI	GCNGC	3 cut(s)	92, 246, 726
BlsI	GCNGC	3 cut(s)	93, 247, 727
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	2 cut(s)	608, 653
BmgT120I	GGNCC	3 cut(s)	608, 653, 660
BmiI	GGNNCC	5 cut(s)	405, 493, 529, 609, 654
BmrFI	CCNGG	1 cut(s)	722
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	575
BsaAI	YACGTR	2 cut(s)	311, 432
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	5 cut(s)	373, 495, 531, 630, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 710
Bse1I	ACTGG	2 cut(s)	140, 561
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	5 cut(s)	373, 495, 531, 630, 656
BseGI	GGATG	2 cut(s)	10, 487
BseLI	CCNNNNNNNGG	2 cut(s)	617, 710
BseNI	ACTGG	2 cut(s)	140, 561
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	78, 232, 712
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	662
BshNI	GGYRCC	3 cut(s)	403, 491, 527
BslFI	GGGAC	2 cut(s)	666, 686
BslI	CCNNNNNNNGG	2 cut(s)	617, 710
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	2 cut(s)	666, 686
BsnI	GGCC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	728
Bsp143I	GATC	2 cut(s)	274, 559
BspACI	CCGC	3 cut(s)	101, 495, 497
BspANI	GGCC	1 cut(s)	662
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	2 cut(s)	646, 769
BspLI	GGNNCC	5 cut(s)	405, 493, 529, 609, 654
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	1 cut(s)	567
BspT107I	GGYRCC	3 cut(s)	403, 491, 527
BspTNI	GGTCTC	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	140, 561
BssECI	CCNNGG	5 cut(s)	373, 495, 531, 630, 656
BssMI	GATC	2 cut(s)	274, 559
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	1 cut(s)	825
Bst6I	CTCTTC	1 cut(s)	693
BstAPI	GCANNNNNTGC	2 cut(s)	245, 542
BstBAI	YACGTR	2 cut(s)	311, 432
BstC8I	GCNNGC	2 cut(s)	327, 712
BstDSI	CCRYGG	3 cut(s)	495, 531, 656
BstF5I	GGATG	2 cut(s)	10, 487
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	2 cut(s)	277, 562
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	2 cut(s)	274, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 245, 542, 596
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	38, 203
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	234
BstSNI	TACGTA	1 cut(s)	432
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	3 cut(s)	78, 232, 712
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	3 cut(s)	495, 531, 656
BtsCI	GGATG	2 cut(s)	10, 487
BtsIMutI	CAGTG	2 cut(s)	133, 554
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	327, 712
CaiI	CAGNNNCTG	2 cut(s)	245, 599
CciI	TCATGA	2 cut(s)	646, 769
Cfr13I	GGNCC	3 cut(s)	608, 653, 660
Cfr42I	CCGCGG	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	255, 492
CviAII	CATG	6 cut(s)	35, 104, 200, 647, 770, 871
CviJI	RGCY	7 cut(s)	173, 233, 245, 512, 599, 662, 725
CviKI_1	RGCY	7 cut(s)	173, 233, 245, 512, 599, 662, 725
CviQI	GTAC	2 cut(s)	255, 492
DpnI	GATC	2 cut(s)	276, 561
DpnII	GATC	2 cut(s)	274, 559
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco105I	TACGTA	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	2 cut(s)	608, 653
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	6 cut(s)	38, 107, 203, 650, 773, 874
FaqI	GGGAC	2 cut(s)	666, 686
FatI	CATG	6 cut(s)	34, 103, 199, 646, 769, 870
FauI	CCCGC	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	92, 246, 726
FokI	GGATG	2 cut(s)	17, 494
Fsp4HI	GCNGC	3 cut(s)	92, 246, 726
GluI	GCNGC	3 cut(s)	92, 246, 726
HaeIII	GGCC	1 cut(s)	662
Hin1II	CATG	6 cut(s)	38, 107, 203, 650, 773, 874
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	571, 643, 787
Hpy166II	GTNNAC	3 cut(s)	40, 157, 503
Hpy188I	TCNGA	3 cut(s)	303, 374, 595
Hpy188III	TCNNGA	4 cut(s)	182, 272, 647, 770
Hpy8I	GTNNAC	3 cut(s)	40, 157, 503
HpyAV	CCTTC	4 cut(s)	179, 277, 391, 673
HpyCH4III	ACNGT	1 cut(s)	825
HpyCH4IV	ACGT	2 cut(s)	310, 431
HpyCH4V	TGCA	4 cut(s)	227, 295, 314, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 245, 542, 596
HpySE526I	ACGT	2 cut(s)	310, 431
Hsp92II	CATG	6 cut(s)	38, 107, 203, 650, 773, 874
KpnI	GGTACC	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	274, 559
LmnI	GCTCC	3 cut(s)	31, 242, 271
Lsp1109I	GCAGC	3 cut(s)	78, 232, 712
LweI	GCATC	1 cut(s)	323
MaeII	ACGT	2 cut(s)	310, 431
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	2 cut(s)	276, 561
MboI	GATC	2 cut(s)	274, 559
MboII	GAAGA	5 cut(s)	349, 362, 580, 680, 758
MflI	RGATCY	1 cut(s)	559
MluCI	AATT	4 cut(s)	57, 437, 614, 636
MlyI	GAGTC	2 cut(s)	565, 637
MnlI	CCTC	5 cut(s)	4, 64, 279, 368, 643
MseI	TTAA	3 cut(s)	345, 443, 740
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	4 cut(s)	100, 245, 542, 596
NdeII	GATC	2 cut(s)	274, 559
NlaIII	CATG	6 cut(s)	38, 107, 203, 650, 773, 874
NlaIV	GGNNCC	5 cut(s)	405, 493, 529, 609, 654
NspI	RCATGY	2 cut(s)	38, 203
PagI	TCATGA	2 cut(s)	646, 769
PaqCI	CACCTGC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	787
PkrI	GCNGC	3 cut(s)	93, 247, 727
PleI	GAGTC	2 cut(s)	565, 637
PmaCI	CACGTG	1 cut(s)	311
PmlI	CACGTG	1 cut(s)	311
PpsI	GAGTC	2 cut(s)	565, 637
Ppu21I	YACGTR	2 cut(s)	311, 432
PpuMI	RGGWCCY	1 cut(s)	608
PsiI	TTATAA	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	720
PspCI	CACGTG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	5 cut(s)	405, 493, 529, 609, 654
PspPI	GGNCC	3 cut(s)	608, 653, 660
PspPPI	RGGWCCY	1 cut(s)	608
PstNI	CAGNNNCTG	2 cut(s)	245, 599
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	2 cut(s)	256, 493
RsaNI	GTAC	2 cut(s)	255, 492
SacII	CCGCGG	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	345, 443, 740
SatI	GCNGC	3 cut(s)	92, 246, 726
Sau3AI	GATC	2 cut(s)	274, 559
Sau96I	GGNCC	3 cut(s)	608, 653, 660
SchI	GAGTC	2 cut(s)	565, 637
ScrFI	CCNGG	1 cut(s)	722
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	608, 653
SnaBI	TACGTA	1 cut(s)	432
Sse9I	AATT	4 cut(s)	57, 437, 614, 636
SsiI	CCGC	3 cut(s)	101, 495, 497
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	825
TaiI	ACGT	2 cut(s)	313, 434
TasI	AATT	4 cut(s)	57, 437, 614, 636
TfiI	GAWTC	1 cut(s)	787
Tru1I	TTAA	3 cut(s)	345, 443, 740
Tru9I	TTAA	3 cut(s)	345, 443, 740
TscAI	CASTG	2 cut(s)	140, 561
TseI	GCWGC	3 cut(s)	91, 245, 725
TspDTI	ATGAA	5 cut(s)	120, 194, 450, 758, 859
TspRI	CASTG	2 cut(s)	140, 561
VpaK11BI	GGWCC	2 cut(s)	608, 653
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	2 cut(s)	38, 203
XmiI	GTMKAC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.