Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000767

Physical Location & Seq

Genomic Coordinates Reverse (-)

71743009 .. 71744250

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0596800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAATTTTTCAGAAATGCCAAAGTGGTACGGTTACGAAGCCACCATGACAAATATCTATCAGCAAATGAAGATGGAGAGACTGTAACACAAGATAAGGATGGAACAGCCACCAATGCTAGATGGACAGTGGAGTTTGTTAACCATGCAGACACTCTGCGTTTCAAAAGCTGTTACGGAAAATACCTAAAGGCGTCAAGCTTGCCATTCAAACCAGGCTTGAGAGGCATTAACAAAGTCCTGCAAACCAAGCCAAGGAGATTGGATTCTTCTCTGGAATGGGAGCCTGTAAGTGATGGATATCAGGTCAGGCTCAGGACGCCCTACGGTCAATTCTTGTGCGCCAATGGGGGCGTTCCACCTTTGAGAAATTCGATCACGCATGACGCCCCTCAAAAAACTGTGAGGCAGGATTGGATTCTATGGGATGTAGATGTCTTAGAGATGCGTTCAGAAGATGATACAACAAATGATGATGCAGAATCTTCACAATCAGAAGAACCCAGATCTCCACCGGGAGACATTAAAATGCCTTTAGGAAAACGGGACAAAATTCGCAAAGAAGTTAAAGAAAATGTTACTCGCATTTCTGATAAAATATCTTCGATTAAATCGAAAGTAACAGTTAAGGTGAGTCAGAAGAGGCGGCCGCCTAAAGTCCAATATTTTTCCGATAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8 Mito_carr

Protein Analysis

227

Amino Acids

26.05

Weight (kDa)

9.53

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 142	1.4e-56	Beta-trefoil domain of unknown function (DUF569)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07320 AT5G51050 AT5G61810 AT5G61810
fragaria_vesca	FvH4_5g09810 FvH4_5g09810 FvH4_5g09810 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390
malus_domestica	MD00G1075800.v1.1 MD14G1145100.v1.1 MD17G1005800.v1.1
prunus_persica	Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1
pyrus_communis	pycom06g11980 pycom111g00140 pycom17g00150
rosa_chinensis	RchiOBHm_Chr2g0176621 RchiOBHm_Chr7g0188421
rosa_laevigata	RLG00000004696 RLG00000022430
rosa_multiflora	Rmu_sc0000952.1_g000002 Rmu_sc0001417.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076260 Rroxscaffold_3G00266430
rosa_rugosa	Rorug02G0596400 Rorug02G0596500 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596700 Rorug02G0596800 Rorug02G0596900 Rorug06G0490400 Rorug06G0490400
rosa_samantha	Rh2AG674500 Rh2BG685600 Rh2CG648900 Rh2DG699800 Rh7AG095100 Rh7BG096600 Rh7CG097300 Rh7DG096800
rosa_wichuraiana	Rw0G015640 Rw2G055350 Rw7G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	646, 650
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	3 cut(s)	5, 370, 552
AcyI	GRCGYC	3 cut(s)	194, 320, 387
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	166, 211
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	171, 201
AluI	AGCT	2 cut(s)	171, 201
Alw26I	GTCTC	2 cut(s)	74, 513
AoxI	GGCC	1 cut(s)	647
ApoI	RAATTY	3 cut(s)	5, 370, 552
AspLEI	GCGC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	643
BccI	CCATC	4 cut(s)	68, 95, 117, 290
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	74, 513
BfaI	CTAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	2 cut(s)	647, 650
BlsI	GCNGC	2 cut(s)	648, 651
Bme1390I	CCNGG	2 cut(s)	216, 516
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	216, 516
BmsI	GCATC	2 cut(s)	435, 466
Bpu10I	CCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	3 cut(s)	194, 320, 387
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	2 cut(s)	106, 433
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	328
BseX3I	CGGCCG	1 cut(s)	647
Bsh1285I	CGRYCG	1 cut(s)	650
BshFI	GGCC	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	74, 513
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	649
Bsp143I	GATC	2 cut(s)	375, 506
BspACI	CCGC	2 cut(s)	646, 650
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	375, 506
BssNI	GRCGYC	3 cut(s)	194, 320, 387
BssT1I	CCWWGG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	6 cut(s)	33, 85, 130, 329, 403, 625
Bst6I	CTCTTC	1 cut(s)	635
BstACI	GRCGYC	3 cut(s)	194, 320, 387
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	314, 439
BstF5I	GGATG	2 cut(s)	106, 433
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	378, 509
BstMAI	GTCTC	2 cut(s)	74, 513
BstMBI	GATC	2 cut(s)	375, 506
BstMCI	CGRYCG	1 cut(s)	650
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 225, 250, 319
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 514
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BstZI	CGGCCG	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	106, 433
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	203
CciNI	GCGGCCGC	1 cut(s)	647
CfoI	GCGC	1 cut(s)	344
CseI	GACGC	3 cut(s)	183, 328, 395
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	47, 146, 383
CviJI	RGCY	9 cut(s)	42, 110, 171, 201, 219, 253, 286, 313, 649
CviKI_1	RGCY	9 cut(s)	42, 110, 171, 201, 219, 253, 286, 313, 649
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	314, 439
DpnI	GATC	2 cut(s)	377, 508
DpnII	GATC	2 cut(s)	375, 506
EaeI	YGGCCR	1 cut(s)	647
EagI	CGGCCG	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
EclXI	CGGCCG	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	302
Eco52I	CGGCCG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	3 cut(s)	50, 149, 386
FaiI	YATR	4 cut(s)	48, 147, 384, 424
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	46, 145, 382
Fnu4HI	GCNGC	2 cut(s)	647, 650
FokI	GGATG	2 cut(s)	113, 440
Fsp4HI	GCNGC	2 cut(s)	647, 650
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	2 cut(s)	647, 650
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	3 cut(s)	183, 328, 395
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	3 cut(s)	194, 320, 387
Hin1II	CATG	3 cut(s)	50, 149, 386
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	4 cut(s)	266, 418, 482, 634
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	6 cut(s)	14, 454, 496, 592, 639, 673
Hpy188III	TCNNGA	2 cut(s)	275, 316
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	6 cut(s)	33, 85, 130, 329, 403, 625
HpyCH4V	TGCA	3 cut(s)	149, 244, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 225, 250, 319
HpyF3I	CTNAG	2 cut(s)	314, 439
Hsp92I	GRCGYC	3 cut(s)	194, 320, 387
Hsp92II	CATG	3 cut(s)	50, 149, 386
HspAI	GCGC	1 cut(s)	342
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	375, 506
LmnI	GCTCC	1 cut(s)	283
LweI	GCATC	2 cut(s)	435, 466
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	5 cut(s)	33, 85, 173, 577, 619
MalI	GATC	2 cut(s)	377, 508
MboI	GATC	2 cut(s)	375, 506
MboII	GAAGA	7 cut(s)	83, 261, 467, 477, 509, 594, 652
MflI	RGATCY	1 cut(s)	506
MluCI	AATT	4 cut(s)	5, 332, 370, 552
MlyI	GAGTC	1 cut(s)	643
MnlI	CCTC	4 cut(s)	218, 399, 402, 636
MseI	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	2 cut(s)	216, 516
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	116, 225, 250, 319
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	2 cut(s)	375, 506
NlaIII	CATG	3 cut(s)	50, 149, 386
NlaIV	GGNNCC	1 cut(s)	285
NotI	GCGGCCGC	1 cut(s)	647
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PfeI	GAWTC	3 cut(s)	266, 418, 482
PkrI	GCNGC	2 cut(s)	648, 651
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
SatI	GCNGC	2 cut(s)	647, 650
Sau3AI	GATC	2 cut(s)	375, 506
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	216, 516
SetI	ASST	6 cut(s)	173, 189, 203, 309, 364, 633
SfaNI	GCATC	2 cut(s)	435, 466
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	5, 332, 370, 552
SsiI	CCGC	2 cut(s)	646, 650
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	214, 514
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	6 cut(s)	33, 85, 130, 329, 403, 625
TaqI	TCGA	3 cut(s)	374, 605, 614
TasI	AATT	4 cut(s)	5, 332, 370, 552
TauI	GCSGC	2 cut(s)	649, 652
TfiI	GAWTC	3 cut(s)	266, 418, 482
Tru1I	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
Tru9I	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	3 cut(s)	5, 370, 552
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.