Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000767

Physical Location & Seq

Genomic Coordinates Reverse (-)

71736974 .. 71740828

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0596600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGTTTTTCAAAAGAGCTAGAGTGGTACGATTGCGAAGCCACCATGAAAAATATCTATTAGCAGAGGATGATCAAGAGACTGTGTGCCAAGATCGTGATGGAACGGCGAGGAATGCTACATGGACAGTGGAGATTGTCCAAAGTGGAACAGCTTTACGTTTGAAAAGCTGTTATGGAAAATACTTAACAGCTTCTAACATGCCATTCCGTCTAGGATTGAGAGGCAAGAAAGTCCTACAAACCCTGCCAAAGAGACTCGATTCTTCTTTGGAATGGGAGCCTGTAAGGGAGGGATACCGGATTAAGCTCAAGACACCCTATGGTCAATTCTTGCGTGCAAATGGCGGTGTACCACCTTGGAGAAACTCCATCACCCATGATGTCCCTCATAGATCTGCAAGACAAGATTGGGTTTTGTGGGATATAGATGTTGTGGAGCTTAAACGTGATTCTCCAGAACATCCATCAATGGCTGCGGCACAGCCCACTCCTGCAAGGGCACAATCCCCTCCTGCAAAGGCACAATCACCTCCTGCAAAGCCACAGTCCCCTCCTGCAGCGCCACAATCCCCTCCTGCAGTGGCACAACCCCCTACTTCTCCACCACCTGAATTACCTATAGAGATTTCAGAATCGAGCTCTCCGACTAAGATTGAGCTTAGGTCTCCCCAACTTCTCCAAAAAGAGTCAAGGAAGTCAATTGATCATGGTTCGCCAAGGAACAATGGAAGAATGATCTTCTATCATGTAGCAGATGACAAAGGAGAAGCCCATGACGATGGAACAGAAAGTGTTTCCTTTTCATTCAAAGGTAGTGAGGTAGAGGCGTTGAAGAAAAGGTTGAAGGAAGAGACAGGGCTCGAGGAATTTGAAGTATGTTCACGCAATCCACTGAATGGCCAACTTTACCCACTTCGCTTACATCTTCCTCCAAACAACCATGATATGCATGTTGTGGTGGTTCCCTCCTTGAGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8 Mito_carr

Protein Analysis

327

Amino Acids

36.67

Weight (kDa)

9.01

Isoelectric Point (pI)

75.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 141	1.1e-67	Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc	PF22932	244 - 322	7.1e-10	DUF569 associated ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07320 AT5G51050 AT5G61810 AT5G61810
fragaria_vesca	FvH4_5g09810 FvH4_5g09810 FvH4_5g09810 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390 FvH4_6g54390
malus_domestica	MD00G1075800.v1.1 MD14G1145100.v1.1 MD17G1005800.v1.1
prunus_persica	Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.3G314500_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1 Prupe.5G139700_v2.0.a1
pyrus_communis	pycom06g11980 pycom111g00140 pycom17g00150
rosa_chinensis	RchiOBHm_Chr2g0176621 RchiOBHm_Chr7g0188421
rosa_laevigata	RLG00000004696 RLG00000022430
rosa_multiflora	Rmu_sc0000952.1_g000002 Rmu_sc0001417.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076260 Rroxscaffold_3G00266430
rosa_rugosa	Rorug02G0596400 Rorug02G0596500 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596600 Rorug02G0596700 Rorug02G0596800 Rorug02G0596900 Rorug06G0490400 Rorug06G0490400
rosa_samantha	Rh2AG674500 Rh2BG685600 Rh2CG648900 Rh2DG699800 Rh7AG095100 Rh7BG096600 Rh7CG097300 Rh7DG096800
rosa_wichuraiana	Rw0G015640 Rw2G055350 Rw7G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	899
AciI	CCGC	2 cut(s)	348, 479
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	869
AfaI	GTAC	2 cut(s)	30, 354
AfiI	CCNNNNNNNGG	1 cut(s)	899
AgsI	TTSAA	6 cut(s)	13, 166, 811, 835, 847, 875
AluBI	AGCT	8 cut(s)	20, 155, 171, 194, 310, 442, 642, 661
AluI	AGCT	8 cut(s)	20, 155, 171, 194, 310, 442, 642, 661
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	4 cut(s)	74, 250, 672, 848
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	2 cut(s)	476, 560
ApoI	RAATTY	1 cut(s)	869
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspLEI	GCGC	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	367, 522
AvaI	CYCGRG	1 cut(s)	863
BaeGI	GKGCMC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	903
BanII	GRGCYC	2 cut(s)	644, 864
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	463, 572
BccI	CCATC	4 cut(s)	95, 380, 475, 776
BceAI	ACGGC	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	2 cut(s)	73, 706
BcoDI	GTCTC	4 cut(s)	74, 250, 672, 848
BfaI	CTAG	2 cut(s)	21, 215
BfmI	CTRYAG	3 cut(s)	558, 579, 621
BfoI	RGCGCY	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	3 cut(s)	477, 480, 561
BlsI	GCNGC	3 cut(s)	478, 481, 562
BmeT110I	CYCGRG	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	282, 966
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	359, 719
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
BseDI	CCNNGG	2 cut(s)	359, 719
BseGI	GGATG	2 cut(s)	76, 463
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	463, 572
BshFI	GGCC	1 cut(s)	903
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	2 cut(s)	371, 535
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	4 cut(s)	74, 250, 672, 848
BsmFI	GGGAC	2 cut(s)	371, 535
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	903
Bso31I	GGTCTC	1 cut(s)	672
BsoBI	CYCGRG	1 cut(s)	863
Bsp1286I	GDGCHC	3 cut(s)	505, 644, 864
Bsp143I	GATC	5 cut(s)	73, 94, 395, 706, 738
BspACI	CCGC	2 cut(s)	348, 479
BspANI	GGCC	1 cut(s)	903
BspLI	GGNNCC	2 cut(s)	282, 966
BspMAI	CTGCAG	2 cut(s)	562, 583
BspTNI	GGTCTC	1 cut(s)	672
BssECI	CCNNGG	2 cut(s)	359, 719
BssMI	GATC	5 cut(s)	73, 94, 395, 706, 738
BssT1I	CCWWGG	2 cut(s)	359, 719
Bst4CI	ACNGT	3 cut(s)	85, 130, 549
Bst6I	CTCTTC	1 cut(s)	846
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	651, 662
BstF5I	GGATG	2 cut(s)	76, 463
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	5 cut(s)	76, 97, 398, 709, 741
BstMAI	GTCTC	4 cut(s)	74, 250, 672, 848
BstMBI	GATC	5 cut(s)	73, 94, 395, 706, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNSI	RCATGY	2 cut(s)	205, 956
BstSFI	CTRYAG	3 cut(s)	558, 579, 621
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	463, 572
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	903
BtsCI	GGATG	2 cut(s)	76, 463
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	135, 588, 893
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	29, 353
CviAII	CATG	9 cut(s)	47, 123, 202, 380, 710, 749, 776, 944, 953
CviQI	GTAC	2 cut(s)	29, 353
DdeI	CTNAG	2 cut(s)	651, 662
DpnI	GATC	5 cut(s)	75, 96, 397, 708, 740
DpnII	GATC	5 cut(s)	73, 94, 395, 706, 738
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	359, 719
Eco24I	GRGCYC	2 cut(s)	644, 864
Eco31I	GGTCTC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	642
EcoT14I	CCWWGG	2 cut(s)	359, 719
EcoT22I	ATGCAT	1 cut(s)	954
EcoT38I	GRGCYC	2 cut(s)	644, 864
ErhI	CCWWGG	2 cut(s)	359, 719
FaeI	CATG	9 cut(s)	50, 126, 205, 383, 713, 752, 779, 947, 956
FaqI	GGGAC	2 cut(s)	371, 535
FatI	CATG	9 cut(s)	46, 122, 201, 379, 709, 748, 775, 943, 952
FbaI	TGATCA	2 cut(s)	73, 706
Fnu4HI	GCNGC	3 cut(s)	477, 480, 561
FokI	GGATG	2 cut(s)	83, 450
FriOI	GRGCYC	2 cut(s)	644, 864
Fsp4HI	GCNGC	3 cut(s)	477, 480, 561
FspBI	CTAG	2 cut(s)	21, 215
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	3 cut(s)	477, 480, 561
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	9 cut(s)	50, 126, 205, 383, 713, 752, 779, 947, 956
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	6 cut(s)	258, 263, 452, 635, 689, 976
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	367, 522
Hpy166II	GTNNAC	2 cut(s)	353, 884
Hpy188I	TCNGA	2 cut(s)	634, 648
Hpy188III	TCNNGA	4 cut(s)	77, 98, 313, 458
Hpy8I	GTNNAC	2 cut(s)	353, 884
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	3 cut(s)	85, 130, 549
HpyCH4IV	ACGT	2 cut(s)	160, 448
HpyCH4V	TGCA	8 cut(s)	341, 401, 497, 518, 539, 560, 581, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	651, 662
HpySE526I	ACGT	2 cut(s)	160, 448
Hsp92II	CATG	9 cut(s)	50, 126, 205, 383, 713, 752, 779, 947, 956
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	2 cut(s)	73, 706
Kzo9I	GATC	5 cut(s)	73, 94, 395, 706, 738
LmnI	GCTCC	2 cut(s)	280, 439
Lsp1109I	GCAGC	2 cut(s)	463, 572
MaeI	CTAG	2 cut(s)	21, 215
MaeII	ACGT	2 cut(s)	160, 448
MalI	GATC	5 cut(s)	75, 96, 397, 708, 740
MboI	GATC	5 cut(s)	73, 94, 395, 706, 738
MboII	GAAGA	6 cut(s)	258, 733, 744, 847, 863, 920
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	3 cut(s)	505, 644, 864
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	4 cut(s)	329, 614, 702, 869
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	2 cut(s)	252, 698
MmeI	TCCRAC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	1 cut(s)	954
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	3 cut(s)	188, 306, 444
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	903
MspI	CCGG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	5 cut(s)	73, 94, 395, 706, 738
NlaIII	CATG	9 cut(s)	50, 126, 205, 383, 713, 752, 779, 947, 956
NlaIV	GGNNCC	2 cut(s)	282, 966
NsiI	ATGCAT	1 cut(s)	954
NspI	RCATGY	2 cut(s)	205, 956
PaeR7I	CTCGAG	1 cut(s)	863
PcsI	WCGNNNNNNNCGW	1 cut(s)	644
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	263, 452, 635
PflMI	CCANNNNNTGG	1 cut(s)	899
PkrI	GCNGC	3 cut(s)	478, 481, 562
PleI	GAGTC	2 cut(s)	252, 697
PpsI	GAGTC	2 cut(s)	252, 697
Psp124BI	GAGCTC	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	282, 966
PspXI	VCTCGAGB	1 cut(s)	863
PstI	CTGCAG	2 cut(s)	562, 583
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	2 cut(s)	30, 354
RsaNI	GTAC	2 cut(s)	29, 353
RseI	CAYNNNNRTG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	188, 306, 444
SatI	GCNGC	3 cut(s)	477, 480, 561
Sau3AI	GATC	5 cut(s)	73, 94, 395, 706, 738
SchI	GAGTC	2 cut(s)	252, 698
SduI	GDGCHC	3 cut(s)	505, 644, 864
SfcI	CTRYAG	3 cut(s)	558, 579, 621
Sfr274I	CTCGAG	1 cut(s)	863
SlaI	CTCGAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	3 cut(s)	311, 863, 973
SmoI	CTYRAG	3 cut(s)	311, 863, 973
Sse9I	AATT	4 cut(s)	329, 614, 702, 869
SsiI	CCGC	2 cut(s)	348, 479
SspMI	CTAG	2 cut(s)	21, 215
SstI	GAGCTC	1 cut(s)	644
StyI	CCWWGG	2 cut(s)	359, 719
TaaI	ACNGT	3 cut(s)	85, 130, 549
TaiI	ACGT	2 cut(s)	163, 451
TaqI	TCGA	3 cut(s)	261, 638, 864
TasI	AATT	4 cut(s)	329, 614, 702, 869
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	263, 452, 635
Tru1I	TTAA	3 cut(s)	188, 306, 444
Tru9I	TTAA	3 cut(s)	188, 306, 444
TscAI	CASTG	3 cut(s)	135, 588, 900
TseI	GCWGC	2 cut(s)	476, 560
TspDTI	ATGAA	2 cut(s)	63, 795
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	135, 588, 900
Van91I	CCANNNNNTGG	1 cut(s)	899
XapI	RAATTY	1 cut(s)	869
XceI	RCATGY	2 cut(s)	205, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	863
XspI	CTAG	2 cut(s)	21, 215
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.