FvH4_7g00211

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010589
Physical Location & Seq
Forward (+)
803739 .. 804469
731 bp
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UTR
Exon/CDS
Intron
FvH4_7g00211.t1

Sequence Viewer

Length: 243 bp
ATGTTAGATCATCAACGAGCACTGAGGCCGCTGCTGCTGCTGCTCGTCATTATTCAATTCCATTTAATAGAAGTAGCTTCCCAGCTAGTTTCATCTTCGGAGCCGGTATCTGCTGCTTACCAGACTGAAGGAGCAGCACATATCCATGGAAAGGGACCAAGTGTAAGGGATACTTTCACTACAAAACATCAAGAAAAAGCAACTGATGGTAGCAACAGGAATGTAGCGGATACATCGTTATAA

Protein Analysis

81

Amino Acids

8.72

Weight (kDa)

6.49

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 37 - 76 3.1e-06 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 241
AciI CCGC 2 cut(s) 29, 227
AcuI CTGAAG 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 2 cut(s) 77, 85
AluI AGCT 2 cut(s) 77, 85
Alw21I GWGCWC 1 cut(s) 22
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 6 cut(s) 31, 34, 37, 40, 113, 134
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 6 cut(s) 18, 21, 24, 27, 100, 146
BccI CCATC 1 cut(s) 200
BciVI GTATCC 2 cut(s) 163, 223
BfaI CTAG 1 cut(s) 86
BfuI GTATCC 2 cut(s) 163, 223
BisI GCNGC 7 cut(s) 29, 32, 35, 38, 41, 114, 135
BlsI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 115, 136
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 102, 156
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 14
BseXI GCAGC 6 cut(s) 18, 21, 24, 27, 100, 146
BseYI CCCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 2 cut(s) 29, 227
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 102, 156
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 145
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 3 cut(s) 34, 37, 40
BstV1I GCAGC 6 cut(s) 18, 21, 24, 27, 100, 146
BsuI GTATCC 2 cut(s) 163, 223
BsuRI GGCC 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 28, 77, 85, 103
CviKI_1 RGCY 4 cut(s) 28, 77, 85, 103
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 141, 147, 241
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 7 cut(s) 29, 32, 35, 38, 41, 114, 135
Fsp4HI GCNGC 7 cut(s) 29, 32, 35, 38, 41, 114, 135
FspBI CTAG 1 cut(s) 86
GluI GCNGC 7 cut(s) 29, 32, 35, 38, 41, 114, 135
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 149
HpaII CCGG 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 37, 40
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 2 cut(s) 100, 131
LpnPI CCDG 4 cut(s) 95, 117, 134, 202
Lsp1109I GCAGC 6 cut(s) 18, 21, 24, 27, 100, 146
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 1 cut(s) 56
MnlI CCTC 1 cut(s) 18
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 34, 37, 40
NcoI CCATGG 1 cut(s) 145
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 2 cut(s) 102, 156
PkrI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 115, 136
PsiI TTATAA 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 102, 156
PspPI GGNCC 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 7 cut(s) 29, 32, 35, 38, 41, 114, 135
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 22
SetI ASST 2 cut(s) 79, 87
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 29, 227
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 145
TasI AATT 1 cut(s) 56
TauI GCSGC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 27
TseI GCWGC 6 cut(s) 31, 34, 37, 40, 113, 134
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.