Rh5CG558200

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010589
Physical Location & Seq
Forward (+)
78095724 .. 78102196
6473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG558200.1

Sequence Viewer

Length: 330 bp
ATGGCAATCCAGGGGTCTTTGCTTTTGGCCATAGTGTTTCTAGTACTTGGCTTTGGATTTAGAAATGGTAAGGCCAGTAATACACCCCCTGCTCAATATGACACTGCTTTCCTCAACAGGACTAGTTTCCCAGTAGGTTTCATATTTGGGACAGCTTCATCATCTTACCAGTATGAAGGTGCTGCTCATTATGGTGGCAGGGGACCAAGCATATGGGATAACTATACCCACAGATATCCAGATAACATGACCAAGATCTTCCTTATCTTAGGCATGCCGCAATATAGTTCTGTTTCATTTTGTACACATTCACTATTCCCTATTCTCTAG

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

8.85

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 41 - 82 8.5e-12 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 2 cut(s) 45, 304
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AoxI GGCC 2 cut(s) 27, 72
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 29
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 11
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 3 cut(s) 41, 123, 328
BglII AGATCT 1 cut(s) 255
BisI GCNGC 2 cut(s) 183, 278
BlsI GCNGC 2 cut(s) 184, 279
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 3 cut(s) 75, 131, 169
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 3 cut(s) 75, 131, 169
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 2 cut(s) 29, 74
BslFI GGGAC 2 cut(s) 163, 216
BsmFI GGGAC 2 cut(s) 163, 216
BsnI GGCC 2 cut(s) 29, 74
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 29, 74
BspLI GGNNCC 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 3 cut(s) 75, 131, 169
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 268
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 2 cut(s) 29, 74
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 44, 303
CviAII CATG 2 cut(s) 247, 274
CviJI RGCY 4 cut(s) 29, 51, 74, 155
CviKI_1 RGCY 4 cut(s) 29, 51, 74, 155
CviQI GTAC 2 cut(s) 44, 303
DdeI CTNAG 1 cut(s) 268
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 27
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 9
EcoRV GATATC 1 cut(s) 236
FaeI CATG 2 cut(s) 250, 277
FaqI GGGAC 2 cut(s) 163, 216
FatI CATG 2 cut(s) 246, 273
FauNDI CATATG 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 183, 278
Fsp4HI GCNGC 2 cut(s) 183, 278
FspBI CTAG 3 cut(s) 41, 123, 328
GluI GCNGC 2 cut(s) 183, 278
HaeIII GGCC 2 cut(s) 29, 74
Hin1II CATG 2 cut(s) 250, 277
Hpy166II GTNNAC 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 2 cut(s) 250, 277
Kzo9I GATC 1 cut(s) 255
LpnPI CCDG 8 cut(s) 23, 88, 102, 103, 144, 182, 184, 252
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 3 cut(s) 41, 123, 328
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MnlI CCTC 1 cut(s) 122
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 212
NdeII GATC 1 cut(s) 255
NlaIII CATG 2 cut(s) 250, 277
NlaIV GGNNCC 1 cut(s) 204
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 184, 279
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 2 cut(s) 45, 304
RsaNI GTAC 2 cut(s) 44, 303
RseI CAYNNNNRTG 1 cut(s) 192
SatI GCNGC 2 cut(s) 183, 278
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 11
SetI ASST 3 cut(s) 139, 157, 181
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 122
SphI GCATGC 1 cut(s) 277
SsiI CCGC 1 cut(s) 278
SspMI CTAG 3 cut(s) 41, 123, 328
StyD4I CCNGG 1 cut(s) 9
TatI WGTACW 2 cut(s) 43, 302
TauI GCSGC 1 cut(s) 280
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 130, 147, 189, 285
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 203
XceI RCATGY 1 cut(s) 277
XspI CTAG 3 cut(s) 41, 123, 328
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.