Rh5CG557800

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010589
Physical Location & Seq
Forward (+)
77957170 .. 77974262
17093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG557800.1

Sequence Viewer

Length: 351 bp
ATGGCAATGCAAGGATCTCTGTTTCTAGGCGTAGTGCTTATACATGTTGCAGGCTTTAAATTGACAAGCAGTGAAGCTCTTACACCCAGTACTCCTATCTATGACACTGGTTTCCTCAACAGGACTAGTTTCCCAGCAGGTTTCATATTTGGGACAGCTTCAGCGTCATATCAGTATGAAGGTGCTGCTAAAGAAGGTGGTAGAGGACCCAGCATATGGGATACCTACACCCACGAACATCCAGAGCATATGGAGGTGTTGATCACCGTCGATGTTTTGCACCGAGCAGATGCTGATGTCACTGAGGCTTCTGTGGAGAAGCAGTTGAGGGTTGAGGCTTGTCATGGCTGA

Protein Analysis

116

Amino Acids

12.54

Weight (kDa)

5.17

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 42 - 101 2e-15 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 216
AclWI GGATC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 43
AhlI ACTAGT 1 cut(s) 125
AluBI AGCT 2 cut(s) 77, 158
AluI AGCT 2 cut(s) 77, 158
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 172
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 261
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 26, 126
BfuAI ACCTGC 1 cut(s) 128
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmcAI AGTACT 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 87, 112
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 87, 112
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 2 cut(s) 133, 209
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 14, 261
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 87, 112
BssMI GATC 2 cut(s) 14, 261
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 17, 264
BstMBI GATC 2 cut(s) 14, 261
BstNSI RCATGY 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 3 cut(s) 76, 105, 300
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 90
CviAII CATG 2 cut(s) 44, 344
CviJI RGCY 6 cut(s) 54, 77, 158, 308, 338, 348
CviKI_1 RGCY 6 cut(s) 54, 77, 158, 308, 338, 348
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 16, 263
DpnII GATC 2 cut(s) 14, 261
DraI TTTAAA 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 206
FaeI CATG 2 cut(s) 47, 347
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 43, 343
FauNDI CATATG 2 cut(s) 215, 249
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 26, 126
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 2 cut(s) 137, 213
HgaI GACGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 47, 347
HphI GGTGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 173, 188
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 10, 50, 280
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 47, 347
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 14, 261
LpnPI CCDG 8 cut(s) 36, 93, 100, 106, 123, 147, 223, 255
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 26, 126
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 16, 263
MboI GATC 2 cut(s) 14, 261
MflI RGATCY 1 cut(s) 14
MluCI AATT 1 cut(s) 59
MnlI CCTC 6 cut(s) 125, 197, 247, 298, 321, 328
MseI TTAA 1 cut(s) 57
NdeI CATATG 2 cut(s) 215, 249
NdeII GATC 2 cut(s) 14, 261
NlaIII CATG 2 cut(s) 47, 347
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 47
PciI ACATGT 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 206
PscI ACATGT 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 206
PspFI CCCAGC 2 cut(s) 133, 209
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 14, 261
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 91
SetI ASST 7 cut(s) 79, 142, 160, 184, 199, 227, 258
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 1 cut(s) 59
SspMI CTAG 2 cut(s) 26, 126
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 270
TasI AATT 1 cut(s) 59
TatI WGTACW 1 cut(s) 89
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 3 cut(s) 76, 112, 307
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 133, 192
TspRI CASTG 3 cut(s) 76, 112, 307
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 47
XspI CTAG 2 cut(s) 26, 126
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.