Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Forward (+)

16688886 .. 16689314

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCAATGAAATATTCACGATCTTTGCTCTTTGGTGTGCTGCTACTCATTGGCTTTGCATTGACAAATAGCAAGGCAACTAATACAGATCCACCTGTTCATTGCGAATTTCTCAATCGCAGCAGTTTTGAACCAGGGTTTATATTTGGCACAGGTTCCGCAGCTTACCAGGAAGGTGCAGTAAAAGAAGATGGAAGAGGCCCAAGCATATGGGATACCTTCACCCACAAACATCCAGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

82

Amino Acids

8.83

Weight (kDa)

6.82

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	41 - 77	7.2e-11	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	3 cut(s)	133, 168, 235
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	40, 120, 161
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	27, 132, 173
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	3 cut(s)	135, 170, 237
BciVI	GTATCC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	41, 121, 162
BlsI	GCNGC	3 cut(s)	42, 122, 163
Bme1390I	CCNGG	3 cut(s)	135, 170, 237
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	3 cut(s)	135, 170, 237
BsaJI	CCNNGG	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	12, 100
BseBI	CCWGG	3 cut(s)	135, 170, 237
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	232
BseMI	GCAATG	2 cut(s)	12, 100
BseXI	GCAGC	3 cut(s)	27, 132, 173
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	20, 88
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	12, 100
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	20, 88
Bst2UI	CCWGG	3 cut(s)	135, 170, 237
Bst6I	CTCTTC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	23, 91
BstMBI	GATC	2 cut(s)	20, 88
BstNI	CCWGG	3 cut(s)	135, 170, 237
BstSCI	CCNGG	3 cut(s)	133, 168, 235
BstV1I	GCAGC	3 cut(s)	27, 132, 173
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	200
CviJI	RGCY	3 cut(s)	54, 164, 201
CviKI_1	RGCY	3 cut(s)	54, 164, 201
DpnI	GATC	2 cut(s)	22, 90
DpnII	GATC	2 cut(s)	20, 88
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	133, 168, 235
FaiI	YATR	3 cut(s)	143, 209, 211
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	41, 121, 162
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	41, 121, 162
GluI	GCNGC	3 cut(s)	41, 121, 162
HaeIII	GGCC	1 cut(s)	201
HphI	GGTGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	167, 229
HpyCH4V	TGCA	2 cut(s)	59, 179
Kzo9I	GATC	2 cut(s)	20, 88
LpnPI	CCDG	7 cut(s)	108, 120, 138, 147, 155, 182, 222
Lsp1109I	GCAGC	3 cut(s)	27, 132, 173
MalI	GATC	2 cut(s)	22, 90
MboI	GATC	2 cut(s)	20, 88
MboII	GAAGA	2 cut(s)	200, 207
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	1 cut(s)	191
MspR9I	CCNGG	3 cut(s)	135, 170, 237
MvaI	CCWGG	3 cut(s)	135, 170, 237
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	2 cut(s)	20, 88
NlaIV	GGNNCC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	42, 122, 163
Psp6I	CCWGG	3 cut(s)	133, 168, 235
PspGI	CCWGG	3 cut(s)	133, 168, 235
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	88
SatI	GCNGC	3 cut(s)	41, 121, 162
Sau3AI	GATC	2 cut(s)	20, 88
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	135, 170, 237
SetI	ASST	6 cut(s)	97, 157, 166, 178, 221, 241
SgeI	CNNG	9 cut(s)	30, 85, 107, 146, 147, 165, 181, 182, 216
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	159
SspI	AATATT	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	133, 168, 235
TasI	AATT	1 cut(s)	107
TseI	GCWGC	3 cut(s)	40, 120, 161
TspDTI	ATGAA	2 cut(s)	23, 89
XapI	RAATTY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.