Rroxscaffold_7G00194750

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010589
Physical Location & Seq
Reverse (-)
36807785 .. 36808199
415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194750.1

Sequence Viewer

Length: 273 bp
ATGCAAGGATCTCTGTTTCTAGGCGTAGTGCTTCTACTTGTTGCAGGCTTTAGATTGACAAGCTGTGAAGCTCTTACACCCAGTACTCCTATCTATGACACTGGTTTCCTCAACAGGACTAGCTTCCCAGAAGGTTTCATATTTGGGACAGCTTCAGCGTCTTATCAGTATGAAGGTGCTGCTAAAGAAGGTGGTAGAGGACCGAGCATATGGGATACCTACACCCACGAACATCCAGGTGCCTATACTCTTCCCCGTCTACTACTTTTTTGA

Protein Analysis

90

Amino Acids

9.78

Weight (kDa)

5.48

Isoelectric Point (pI)

13.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 40 - 78 1.1e-13 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 259
AclWI GGATC 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 4 cut(s) 63, 71, 123, 152
AluI AGCT 4 cut(s) 63, 71, 123, 152
AlwI GGATC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 208
BfaI CTAG 2 cut(s) 20, 120
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 81, 106
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 81, 106
BseXI GCAGC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 239
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 81, 106
BssMI GATC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuI GTATCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 5 cut(s) 48, 63, 71, 123, 152
CviKI_1 RGCY 5 cut(s) 48, 63, 71, 123, 152
CviQI GTAC 1 cut(s) 84
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 235
FaiI YATR 6 cut(s) 96, 140, 171, 209, 211, 246
FaqI GGGAC 1 cut(s) 160
FauNDI CATATG 1 cut(s) 209
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 20, 120
GluI GCNGC 1 cut(s) 180
HgaI GACGC 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 125, 167, 182
HpyCH4V TGCA 2 cut(s) 4, 44
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 7 cut(s) 30, 87, 94, 100, 141, 222, 249
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 2 cut(s) 20, 120
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 242
MflI RGATCY 1 cut(s) 8
MnlI CCTC 2 cut(s) 119, 191
MslI CAYNNNNRTG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 209
NdeII GATC 1 cut(s) 8
NlaIV GGNNCC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 237
SetI ASST 9 cut(s) 65, 73, 125, 136, 154, 178, 193, 221, 241
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 237
SspMI CTAG 2 cut(s) 20, 120
StyD4I CCNGG 1 cut(s) 235
TaqII GACCGA 1 cut(s) 217
TatI WGTACW 1 cut(s) 83
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 127, 186
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 2 cut(s) 20, 120
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.