Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001711.1

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Forward (+)

37778 .. 38201

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001711.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgcaaggatctctgtttctaggtgtagtgcgtctacttgttacaggctttagattgacatgcagtgaagcttcgacagccaatactcctatctatgacactggtttcctcaacaggacaagtttcccagcgggtttcatatttgggacaggttcagcgtcttatcagtatgaaggtgctgctaaagaaggtggtagaggaccgagcatatgggatacctacacccacgaacatccaggtgcctatactgtcttccccctctactacttttttgacatgatttcttgcttagaagtagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

100

Amino Acids

11.0

Weight (kDa)

4.95

Isoelectric Point (pI)

15.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 99
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	2 cut(s)	20, 147
CviAII	CATG	2 cut(s)	60, 277
CviJI	RGCY	3 cut(s)	48, 71, 80
CviKI_1	RGCY	3 cut(s)	48, 71, 80
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	63, 280
FaiI	YATR	8 cut(s)	61, 96, 140, 171, 209, 211, 246, 278
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	59, 276
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	209
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	131
HgaI	GACGC	2 cut(s)	20, 147
Hin1II	CATG	2 cut(s)	63, 280
HindIII	AAGCTT	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	167, 182
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	4, 63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	289
Hsp92II	CATG	2 cut(s)	63, 280
Kzo9I	GATC	1 cut(s)	8
LpnPI	CCDG	7 cut(s)	30, 87, 100, 135, 141, 222, 249
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	1 cut(s)	244
MflI	RGATCY	1 cut(s)	8
MnlI	CCTC	3 cut(s)	119, 191, 269
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	2 cut(s)	63, 280
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	237
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	7 cut(s)	25, 73, 154, 178, 193, 221, 241
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	237
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	74
TaqII	GACCGA	1 cut(s)	217
TscAI	CASTG	2 cut(s)	70, 106
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	127, 186
TspRI	CASTG	2 cut(s)	70, 106
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.