Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Forward (+)

1812762 .. 1813343

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCAATACAGTTGCGATGTTGGATCGTATGCTTGTTACAATTAGTGTTACTAGTTAGCGTTGCACTGACAAATGGCACAGATGCTAGTACGGATCCGCCCATTCATTGTGGCTCTCTCAGCAGACGTAGTTTTGAACCAGGGTTCATATTTGGCACAGCTTCGGCATCCTATCAGTTCGAAGGTGCTGCAAAAGAAGATGGTAGAAGACCGAGCATATGGGATACCTACACGCACGCCCATCCAGAAAGAATTGTAGATTGCAGCAACAGAGATGTTGCAGTTGATCAATATCACCGCTATAAGGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

6.88

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	98, 298
AclWI	GGATC	3 cut(s)	32, 89, 102
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	137
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AlwI	GGATC	3 cut(s)	32, 89, 102
ApeKI	GCWGC	2 cut(s)	188, 264
AsuHPI	GGTGA	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	175, 276
BccI	CCATC	2 cut(s)	194, 249
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	286
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	2 cut(s)	53, 87
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	189, 265
BlsI	GCNGC	2 cut(s)	190, 266
Bme1390I	CCNGG	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	73, 176
BpiI	GAAGAC	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	167, 241
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	175, 276
BslI	CCNNNNNNNGG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	24, 94, 286
BspACI	CCGC	2 cut(s)	98, 298
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	3 cut(s)	32, 89, 102
BspT104I	TTCGAA	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	3 cut(s)	24, 94, 286
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	167, 241
BstKTI	GATC	3 cut(s)	27, 97, 289
BstMBI	GATC	3 cut(s)	24, 94, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	175, 276
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	167, 241
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	90
CviJI	RGCY	2 cut(s)	114, 161
CviKI_1	RGCY	2 cut(s)	114, 161
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	3 cut(s)	26, 96, 288
DpnII	GATC	3 cut(s)	24, 94, 286
EciI	GGCGGA	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	139
FaiI	YATR	5 cut(s)	31, 149, 218, 220, 303
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	189, 265
FokI	GGATG	2 cut(s)	154, 228
Fsp4HI	GCNGC	2 cut(s)	189, 265
FspBI	CTAG	2 cut(s)	53, 87
GluI	GCNGC	2 cut(s)	189, 265
HphI	GGTGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	65, 191, 264, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	24, 94, 286
LpnPI	CCDG	3 cut(s)	126, 153, 258
Lsp1109I	GCAGC	2 cut(s)	175, 276
LweI	GCATC	2 cut(s)	73, 176
MaeI	CTAG	2 cut(s)	53, 87
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	36, 48
MalI	GATC	3 cut(s)	26, 96, 288
MboI	GATC	3 cut(s)	24, 94, 286
MboII	GAAGA	2 cut(s)	209, 219
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	2 cut(s)	41, 252
MseI	TTAA	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	3 cut(s)	24, 94, 286
NlaIV	GGNNCC	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	190, 266
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	189, 265
Sau3AI	GATC	3 cut(s)	24, 94, 286
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	5 cut(s)	130, 163, 187, 230, 309
SfaNI	GCATC	2 cut(s)	73, 176
SfuI	TTCGAA	1 cut(s)	180
SgeI	CNNG	9 cut(s)	46, 65, 99, 152, 153, 225, 244, 248, 257
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	2 cut(s)	41, 252
SsiI	CCGC	2 cut(s)	98, 298
SspMI	CTAG	2 cut(s)	53, 87
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	41, 252
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	2 cut(s)	188, 264
TspDTI	ATGAA	2 cut(s)	95, 136
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	72
XspI	CTAG	2 cut(s)	53, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.