Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Forward (+)

84388878 .. 84406163

Gene Structure 17286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG534900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAATCCAGGGGTCTTTGCTTTTGGCCATAGTGTTTCTAGTACTTGGCTTTGGATTTAGAAATGGTAAGGCCAGTAATACACCCCCTGCTCAATATGACACTGCTTTCCTCAACAGGACTAGTTTCCCAGTAGGTTTCATATTTGGGACAGCTTCATCATCTTACCAGTATGAAGGTGCTGCTCATTATGGTGGCAGGGGACCAAGCATATGGGATAACTATACCCACAGATATCCAGACAACTTTGAATGGAATTCTGGTTACACTGTCCGATTTGGTATCAACTATGTAGATTACAAAAATGGGCAGAATAGGCACCCAAAACTTTCTGCACACTGGTTCAAACGTTTCCTCAAGAAAAGGGATGGCGTTAACGTGAAGGGATATTTTGCTTGGTCTTTGTTTGACAACTTCGAATGGAATATGGGTTACAGTGTAAGGTTTGGCATCAACTATGTGGATTACAATGATGGGCTCAAAAGATACCCTAAACTCTCAGCACACTGGTTCAAGAATTTTCTTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

177

Amino Acids

20.56

Weight (kDa)

9.61

Isoelectric Point (pI)

9.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	41 - 78	9.4e-11	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	81 - 122	2.8e-09	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	122 - 176	2.3e-18	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AclI	AACGTT	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	256, 517
AfaI	GTAC	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	251, 346, 514, 527
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AoxI	GGCC	2 cut(s)	27, 72
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	256, 517
AspS9I	GGNCC	1 cut(s)	203
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	362, 467
BciT130I	CCWGG	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	41, 123
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	204, 320
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	10
Bse1I	ACTGG	5 cut(s)	75, 131, 169, 344, 512
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	5 cut(s)	75, 131, 169, 344, 512
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	29, 74
BshNI	GGYRCC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	163, 216
BsmFI	GGGAC	2 cut(s)	163, 216
BsnI	GGCC	2 cut(s)	29, 74
Bsp119I	TTCGAA	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	29, 74
BspCNI	CTCAG	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	204, 320
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	318
BsrI	ACTGG	5 cut(s)	75, 131, 169, 344, 512
BssECI	CCNNGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	271, 437
BstBI	TTCGAA	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	29, 74
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	5 cut(s)	102, 267, 337, 442, 505
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	5 cut(s)	29, 51, 74, 155, 478
CviKI_1	RGCY	5 cut(s)	29, 51, 74, 155, 478
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	480
FaqI	GGGAC	2 cut(s)	163, 216
FauNDI	CATATG	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	41, 123
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	29, 74
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HpaI	GTTAAC	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	4 cut(s)	239, 358, 514, 524
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	170, 376
HpyCH4III	ACNGT	2 cut(s)	271, 437
HpyCH4IV	ACGT	2 cut(s)	349, 378
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	499
HpySE526I	ACGT	2 cut(s)	349, 378
KspAI	GTTAAC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	2 cut(s)	41, 123
MaeII	ACGT	2 cut(s)	349, 378
MaeIII	GTNAC	2 cut(s)	263, 431
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	3 cut(s)	256, 517, 529
MluNI	TGGCCA	1 cut(s)	29
MnlI	CCTC	2 cut(s)	122, 365
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeI	CATATG	1 cut(s)	212
NlaIV	GGNNCC	2 cut(s)	204, 320
NspV	TTCGAA	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	204, 320
PspPI	GGNCC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	6 cut(s)	139, 157, 181, 352, 381, 446
SfaNI	GCATC	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	3 cut(s)	256, 517, 529
SspMI	CTAG	2 cut(s)	41, 123
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	271, 437
TaiI	ACGT	2 cut(s)	352, 381
TaqI	TCGA	1 cut(s)	417
TasI	AATT	3 cut(s)	256, 517, 529
TatI	WGTACW	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	5 cut(s)	109, 274, 344, 442, 512
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	130, 147, 189
TspRI	CASTG	5 cut(s)	109, 274, 344, 442, 512
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	256, 517
XspI	CTAG	2 cut(s)	41, 123
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.