Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Forward (+)

78051199 .. 78065864

Gene Structure 14666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG558000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAAGGATCTCTGTTTCTAGGCGTAGTGCTTCTACTTGTTACAGGCTTTAGATTGACAAGCAGTGAAGCTTCGACAGCCAGTACTCCTATCTATGACACTGGTTTCCTCAACAGGACTAGTTTCCCAGCAGGTTTCATATTTGGGACAGGTTCAGCGTCTTATCAGTATGAAGGTGCTGCTAAAGAAGGTGGCAAAGGACCGAGCATATGGGATACCTACACCACGAACATCCAGGTTGGAGATTGTGGATTATCAAGAATCAATCACAATACTTTGGTATCTGGTTATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

98

Amino Acids

10.34

Weight (kDa)

5.56

Isoelectric Point (pI)

14.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	40 - 77	4.2e-12	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	16
AfaI	GTAC	1 cut(s)	85
AhlI	ACTAGT	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BbvI	GCAGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	2 cut(s)	20, 120
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	81, 106
BseBI	CCWGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	81, 106
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	8
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	81, 106
BssMI	GATC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 99
BveI	ACCTGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	84
CviJI	RGCY	3 cut(s)	48, 71, 80
CviKI_1	RGCY	3 cut(s)	48, 71, 80
CviQI	GTAC	1 cut(s)	84
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	234
FaiI	YATR	6 cut(s)	96, 140, 171, 209, 211, 291
FaqI	GGGAC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	20, 120
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	167, 182
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	8
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	20, 120
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MflI	RGATCY	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	7 cut(s)	73, 136, 154, 178, 193, 221, 240
SinI	GGWCC	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	119
SspMI	CTAG	2 cut(s)	20, 120
StyD4I	CCNGG	1 cut(s)	234
TaqI	TCGA	1 cut(s)	74
TaqII	GACCGA	1 cut(s)	217
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	2 cut(s)	70, 106
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	127, 186
TspRI	CASTG	2 cut(s)	70, 106
VpaK11BI	GGWCC	1 cut(s)	200
XspI	CTAG	2 cut(s)	20, 120
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.