Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Reverse (-)

31006869 .. 31008223

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1243100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGCTGCGATTAGGGTCTTCTCTGTCATGCGTGCTGCTACTACTAGTTGGCCTTGCATTGACAAGTAGTAAAGCTGCGATTACACCCACTGTTTACGACACTGCTTTCCTCAACAGGAGCAGTTTTCCAGTAGGGTTTATATTTGGCACTGCTTCATCCTCTTATCAGTATGAAGGTGCTGCAAGACAAGATGGTAGAGGACCAAGCATATGGGACACCTACGCCCACAAATATCCAGAAAAGATCAAAGATGGTAGCAATGGAGATGTTGCTAACGATGAATATCACCGTTATAAGGTAAAAATCACACTAACTTTATTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

110

Amino Acids

11.91

Weight (kDa)

8.73

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	41 - 105	2.3e-21	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	46
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	4 cut(s)	7, 37, 77, 182
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	24, 64, 169
BccI	CCATC	2 cut(s)	188, 248
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	2 cut(s)	47, 328
BisI	GCNGC	4 cut(s)	8, 38, 78, 183
BlsI	GCNGC	4 cut(s)	9, 39, 79, 184
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	285
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	24, 64, 169
BshFI	GGCC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	94, 293
BstC8I	GCNNGC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	24, 64, 169
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	2 cut(s)	102, 150
BtsIMutI	CAGTG	3 cut(s)	90, 102, 150
Cac8I	GCNNGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	203
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	2 cut(s)	54, 77
CviKI_1	RGCY	2 cut(s)	54, 77
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	203
FaeI	CATG	1 cut(s)	33
FaiI	YATR	6 cut(s)	31, 143, 174, 212, 214, 297
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	29
FauNDI	CATATG	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	8, 38, 78, 183
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	8, 38, 78, 183
FspBI	CTAG	2 cut(s)	47, 328
GluI	GCNGC	4 cut(s)	8, 38, 78, 183
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	94, 293
HpyCH4V	TGCA	2 cut(s)	59, 185
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	3 cut(s)	103, 144, 252
Lsp1109I	GCAGC	3 cut(s)	24, 64, 169
MaeI	CTAG	2 cut(s)	47, 328
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	1 cut(s)	12
MnlI	CCTC	3 cut(s)	122, 172, 194
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	1 cut(s)	33
PkrI	GCNGC	4 cut(s)	9, 39, 79, 184
PsiI	TTATAA	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	203
SatI	GCNGC	4 cut(s)	8, 38, 78, 183
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	203
SetI	ASST	4 cut(s)	79, 181, 224, 303
SinI	GGWCC	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	46
SspMI	CTAG	2 cut(s)	47, 328
TaaI	ACNGT	2 cut(s)	94, 293
TscAI	CASTG	3 cut(s)	97, 109, 157
TseI	GCWGC	4 cut(s)	7, 37, 77, 182
TspDTI	ATGAA	3 cut(s)	147, 189, 297
TspRI	CASTG	3 cut(s)	97, 109, 157
VpaK11BI	GGWCC	1 cut(s)	203
XspI	CTAG	2 cut(s)	47, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.