Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Forward (+)

78159463 .. 78191281

Gene Structure 31819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG558600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTGTCCATTTCCAGAGGCTCTTCTTTCCTTAATATTATTACTATAAGCCTTATAGTAATTCCTTTTGCCTCGTTAGTAAGAGGTAGTACTAGTGATGATCTGAGCAGCGATCGCTATGCAACTGCTTTTCTCAACCGGACCAGTTTTCCAGCTGGTTTTGTATTCGGCACAGCTTCATCAGCTTACCAGTATGAAGGTGCTGCAAATGAAAGTGGTAGAGGACCAAGTATATGGGATACTTTCACCCACAAATATCCAGCCCTTCGTAATGGAATCCCCATTGGTCCAAAGTTGCAAAGGCGGTACAACAAATTACAAAGAAATGACGTTCTGCCAGAGTGGAGGAAAGTTCAGACTTCTTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

10.07

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	48 - 86	1.4e-13	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	304
AfaI	GTAC	2 cut(s)	91, 308
AhlI	ACTAGT	1 cut(s)	92
AluBI	AGCT	3 cut(s)	155, 176, 185
AluI	AGCT	3 cut(s)	155, 176, 185
ApeKI	GCWGC	2 cut(s)	108, 203
AsiSI	GCGATCGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	141, 224, 287
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	3 cut(s)	141, 224, 287
BbvI	GCAGC	2 cut(s)	120, 190
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciVI	GTATCC	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	109, 204
BlsI	GCNGC	2 cut(s)	110, 205
BmcAI	AGTACT	1 cut(s)	91
Bme18I	GGWCC	3 cut(s)	141, 224, 287
BmgT120I	GGNCC	3 cut(s)	141, 224, 287
BsaWI	WCCGGW	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	144, 190
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	144, 190
BseXI	GCAGC	2 cut(s)	120, 190
Bsh1285I	CGRYCG	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	100, 112
BspACI	CCGC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	144, 190
BssMI	GATC	2 cut(s)	100, 112
Bst6I	CTCTTC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	104
BstKTI	GATC	2 cut(s)	103, 115
BstMBI	GATC	2 cut(s)	100, 112
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 182
BstV1I	GCAGC	2 cut(s)	120, 190
BstXI	CCANNNNNNTGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	141, 224, 287
Csp6I	GTAC	2 cut(s)	90, 307
CviAII	CATG	1 cut(s)	369
CviJI	RGCY	6 cut(s)	21, 51, 155, 176, 185, 263
CviKI_1	RGCY	6 cut(s)	21, 51, 155, 176, 185, 263
CviQI	GTAC	2 cut(s)	90, 307
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	102, 114
DpnII	GATC	2 cut(s)	100, 112
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco47I	GGWCC	3 cut(s)	141, 224, 287
FaeI	CATG	1 cut(s)	372
FaiI	YATR	7 cut(s)	47, 56, 120, 195, 233, 235, 370
FatI	CATG	1 cut(s)	368
Fnu4HI	GCNGC	2 cut(s)	109, 204
Fsp4HI	GCNGC	2 cut(s)	109, 204
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	109, 204
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	1 cut(s)	372
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	105, 357
Hpy188III	TCNNGA	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	191, 275
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	122, 206, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 182
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	100, 112
LguI	GCTCTTC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	28, 141, 152, 157, 165, 203, 273, 351
Lsp1109I	GCAGC	2 cut(s)	120, 190
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	330
MalI	GATC	2 cut(s)	102, 114
MboI	GATC	2 cut(s)	100, 112
MboII	GAAGA	1 cut(s)	15
MluCI	AATT	2 cut(s)	60, 314
MnlI	CCTC	5 cut(s)	11, 77, 82, 215, 339
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	114, 182
NdeII	GATC	2 cut(s)	100, 112
NlaIII	CATG	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	110, 205
Ple19I	CGATCG	1 cut(s)	115
PspPI	GGNCC	3 cut(s)	141, 224, 287
PvuI	CGATCG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	155
RgaI	GCGATCGC	1 cut(s)	115
RsaI	GTAC	2 cut(s)	91, 308
RsaNI	GTAC	2 cut(s)	90, 307
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	109, 204
Sau3AI	GATC	2 cut(s)	100, 112
Sau96I	GGNCC	3 cut(s)	141, 224, 287
ScaI	AGTACT	1 cut(s)	91
SetI	ASST	6 cut(s)	88, 157, 178, 187, 202, 333
SfaAI	GCGATCGC	1 cut(s)	115
SgfI	GCGATCGC	1 cut(s)	115
SinI	GGWCC	3 cut(s)	141, 224, 287
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	2 cut(s)	60, 314
SsiI	CCGC	1 cut(s)	304
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	333
TasI	AATT	2 cut(s)	60, 314
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseI	GCWGC	2 cut(s)	108, 203
TspDTI	ATGAA	3 cut(s)	168, 210, 225
VpaK11BI	GGWCC	3 cut(s)	141, 224, 287
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.