Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2029620 .. 2031148

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1023400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCATCCAGATCTAGAGGCTCTATTCTTATACAGCTTATAGGTTTCTTGGTAATTGTTCTTGCCTCAATGGTGAAGAGTAGTAGAGTTACAATACCTAGAGTAAGTACTGATCTGTACGACACTACTTCCCTCAACCGGAGCAGTTTTCCTACAGGTTTCTTATTTGGAACAGCTTCAGCCGCTTACCAGTATGAAGGTGCTGCGAGTGAAGATGGTAGAGGTCCAAGTATATGGGATACATACGTTCATAAATACCCAGGTTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

91

Amino Acids

9.79

Weight (kDa)

9.22

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	48 - 85	7.5e-14	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00211
malus_domestica	MD09G1243100.v1.1 MD11G1023400.v1.1
pyrus_communis	pycom05g09720 pycom05g13110 pycom11g02120
rosa_multiflora	Rmu_sc0001711.1_g000009 Rmu_sc0001711.1_g000031 Rmu_sc0006499.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194750
rosa_samantha	Rh1BG001300 Rh1CG008800 Rh5BG487900 Rh5BG534300 Rh5BG534900 Rh5BG535300 Rh5CG557800 Rh5CG558000 Rh5CG558200 Rh5CG558600 Rh6BG198000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	109, 119
AfiI	CCNNNNNNNGG	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	37, 176
AluI	AGCT	2 cut(s)	37, 176
ApeKI	GCWGC	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	15, 99
BfmI	CTRYAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	232
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	2 cut(s)	183, 204
BlsI	GCNGC	2 cut(s)	184, 205
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	11, 112
BspACI	CCGC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	11, 112
Bst2UI	CCWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	2 cut(s)	14, 115
BstMBI	GATC	2 cut(s)	11, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	108, 118
CviJI	RGCY	4 cut(s)	21, 37, 176, 182
CviKI_1	RGCY	4 cut(s)	21, 37, 176, 182
CviQI	GTAC	2 cut(s)	108, 118
DpnI	GATC	2 cut(s)	13, 114
DpnII	GATC	2 cut(s)	11, 112
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	259
FaiI	YATR	7 cut(s)	32, 41, 195, 233, 235, 244, 252
Fnu4HI	GCNGC	2 cut(s)	183, 204
Fsp4HI	GCNGC	2 cut(s)	183, 204
FspBI	CTAG	2 cut(s)	15, 99
GluI	GCNGC	2 cut(s)	183, 204
HapII	CCGG	1 cut(s)	139
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	9, 15
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	11, 112
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	22, 141, 152, 203, 246
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	15, 99
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	13, 114
MboI	GATC	2 cut(s)	11, 112
MboII	GAAGA	2 cut(s)	88, 224
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	4 cut(s)	11, 76, 143, 215
MroXI	GAANNNNTTC	1 cut(s)	175
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	2 cut(s)	11, 112
PdmI	GAANNNNTTC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	184, 205
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	2 cut(s)	109, 119
RsaNI	GTAC	2 cut(s)	108, 118
SatI	GCNGC	2 cut(s)	183, 204
Sau3AI	GATC	2 cut(s)	11, 112
Sau96I	GGNCC	1 cut(s)	224
ScaI	AGTACT	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	9 cut(s)	39, 46, 100, 160, 178, 202, 226, 249, 265
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	2 cut(s)	15, 99
StyD4I	CCNGG	1 cut(s)	259
TaiI	ACGT	1 cut(s)	249
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	210, 239
VpaK11BI	GGWCC	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	175
XspI	CTAG	2 cut(s)	15, 99
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.