Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010590

Physical Location & Seq

Genomic Coordinates Reverse (-)

5036850 .. 5040760

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTCGTTTAGATCTAAATTCCTATCAAAGAGCAACACCAAGGGTGGCCAGAATGTGGAAGAAGAAAAGCAGCGCCCTACGCAAGCAGTCTTAGCAGCAGGTAAGCGCCGGGGAAAGAAAGAGAAAGGCTTTATTCCGGCGGACGATCGGCGGTCTCTATACCTCTGCTTCGGTGAGTACGAAGAGGGCAATAAGGTGTCGTACACGATTCTATCTGTGAGCTTGCGCCAACTGCTTGCTGCTCCTTCTCCACGGAAATTACAGTTGTTCACTAAAATTTCGGGCGATGGCGATGATATGCCCCGTTATATGGGTTGCGGCGTCTGGGGCTCCAAAATCCTGTTGGGCGGTGGCGCAAAGCCGATGTATATGCATTGTCCCATAGATGGACAACCCGTTTTTGGGCGTCTCCGACATCACGAGGTCCGAAAGTTTTATTGTTTTGAGACTGGAAATGGAAATGGCAATGGCAATGGCAATGACATGATGGTAGAGCCGCCGAAGAAGATGTTAAAAGGGAGCATTCAGCCCCTGCTGGTGGAGGTGGACACCAAGCTTTATGCCCTAGGTAAATCATTTCGCTCTTTTGAAATGTTTGACGGCGATAATTGGCATGAACTGCCGAAACCTCCACACGGAACTTTTTCGTGTTATCCGTTTACAGAATCACACCCGGATTGGAAGAACGATATATACTATGCAGTGGCAGGCACAAATATATTGGTTTCTGATGGTAGGTCAAGCTTCCGGTTTGACACAACTGATCCAGACCAAAGCTGGAGACAACTACTGCACGAGCCAGGCTTCGACTTCGACCGATTCTCTTTTAAGGGCACAAGTTTAGTTGTGAATGATGGTAAACAATTTGTGCTTTTCACATTCCAACTCTCTGCTGGTCATCACATTTCGGTGCATCTGATTCCATATGACTTTAGTATCATCAAACAAGACTACAGCCGTGTCCAGCTGCCTTCATACTTGATGAATTACAAGGACGATCATCTTGGGCAGCTTCCATTAGCCAATTATCAGCTGGTACACCTGGGAGATAATACTGTCTGCCTTCTTTTGTCTGAACTCCGCCATTATGCCAACAAGAAGATAATCAGGTGTGTTGAACCCGTAGCATTCACGTTCAAAGTCAGAGACAATGCCACTTCGTCCTTGAAAGTCAAATTCCTGCCTCGCACCCCAATGCTCATATATGATGAGGACAATGATGATGATGTGGATGTGCCTTCTAGAGCTGGACAAATGCTTGGTGCCTTCATGCTGGAAAATCCACAAGTCCTTCCAGCTGAATTTCAGAGTGTAGAAGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

49.87

Weight (kDa)

7.63

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04500
rosa_chinensis	RchiOBHm_Chr5g0043731 RchiOBHm_Chr5g0043771
rosa_laevigata	RLG00000034212 RLG00000034214 RLG00000034215
rosa_multiflora	Rmu_sc0002448.1_g000008 Rmu_sc0008441.1_g000004 Rmu_sc0008441.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037290
rosa_rugosa	Rorug05G0208200 Rorug05G0208300
rosa_samantha	Rh5BG299500 Rh5BG299800 Rh5BG299900 Rh5BG300300 Rh5DG308500 Rh5DG308700 Rh5DG308800 Rh5DG309200 Rh5DG309300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	1262
AccB7I	CCANNNNNTGG	1 cut(s)	55
AciI	CCGC	6 cut(s)	140, 151, 318, 348, 497, 1081
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	4 cut(s)	17, 276, 1175, 1301
AcyI	GRCGYC	2 cut(s)	321, 406
AfaI	GTAC	3 cut(s)	179, 203, 1038
AfiI	CCNNNNNNNGG	7 cut(s)	55, 310, 386, 401, 402, 538, 635
AgsI	TTSAA	4 cut(s)	590, 1118, 1138, 1168
AjnI	CCWGG	2 cut(s)	799, 1041
AluBI	AGCT	9 cut(s)	222, 556, 744, 777, 967, 1012, 1033, 1247, 1298
AluI	AGCT	9 cut(s)	222, 556, 744, 777, 967, 1012, 1033, 1247, 1298
Alw26I	GTCTC	5 cut(s)	159, 413, 440, 775, 1140
AlwI	GGATC	1 cut(s)	758
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	5 cut(s)	70, 95, 239, 967, 1009
ApoI	RAATTY	4 cut(s)	17, 276, 1175, 1301
Asp700I	GAANNNNTTC	1 cut(s)	643
AspA2I	CCTAGG	1 cut(s)	565
AspLEI	GCGC	4 cut(s)	75, 108, 228, 356
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	2 cut(s)	110, 674
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	424
AvrII	CCTAGG	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	836
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	1262
BanII	GRGCYC	1 cut(s)	332
BauI	CACGAG	2 cut(s)	419, 794
BbvI	GCAGC	5 cut(s)	82, 107, 226, 954, 1021
BccI	CCATC	5 cut(s)	281, 380, 481, 725, 848
BceAI	ACGGC	2 cut(s)	616, 942
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	2 cut(s)	801, 1043
BcnI	CCSGG	2 cut(s)	110, 674
BcoDI	GTCTC	5 cut(s)	159, 413, 440, 775, 1140
BfaI	CTAG	2 cut(s)	566, 1242
BfmI	CTRYAG	1 cut(s)	952
BfoI	RGCGCY	2 cut(s)	76, 109
BfuAI	ACCTGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	7 cut(s)	71, 96, 240, 319, 497, 968, 1010
BlnI	CCTAGG	1 cut(s)	565
BlsI	GCNGC	7 cut(s)	72, 97, 241, 320, 498, 969, 1011
Bme1390I	CCNGG	4 cut(s)	110, 674, 801, 1043
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	331, 1264
BmrFI	CCNGG	4 cut(s)	110, 674, 801, 1043
BmsI	GCATC	1 cut(s)	922
BpmI	CTGGAG	1 cut(s)	799
BpuMI	CCSGG	2 cut(s)	110, 674
BsaHI	GRCGYC	2 cut(s)	321, 406
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	39, 109, 251, 565, 1042
BsaWI	WCCGGW	1 cut(s)	747
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 310, 386, 401, 402, 538, 635
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	3 cut(s)	472, 478, 484
BseBI	CCWGG	2 cut(s)	801, 1043
BseDI	CCNNGG	5 cut(s)	39, 109, 251, 565, 1042
BseGI	GGATG	1 cut(s)	1237
BseLI	CCNNNNNNNGG	7 cut(s)	55, 310, 386, 401, 402, 538, 635
BseMI	GCAATG	3 cut(s)	472, 478, 484
BseNI	ACTGG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	5 cut(s)	82, 107, 226, 954, 1021
BsgI	GTGCAG	1 cut(s)	776
Bsh1285I	CGRYCG	2 cut(s)	148, 817
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	1262
BsiEI	CGRYCG	2 cut(s)	148, 817
BsiSI	CCGG	4 cut(s)	109, 137, 674, 748
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	7 cut(s)	55, 310, 386, 401, 402, 538, 635
BsmAI	GTCTC	5 cut(s)	159, 413, 440, 775, 1140
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	2 cut(s)	522, 1127
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	332, 836
Bsp143I	GATC	4 cut(s)	11, 145, 763, 997
BspACI	CCGC	6 cut(s)	140, 151, 318, 348, 497, 1081
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	331, 1264
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	3 cut(s)	472, 478, 484
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	5 cut(s)	39, 109, 251, 565, 1042
BssMI	GATC	4 cut(s)	11, 145, 763, 997
BssNI	GRCGYC	2 cut(s)	321, 406
BssSI	CACGAG	2 cut(s)	419, 794
BssT1I	CCWWGG	2 cut(s)	39, 565
Bst2BI	CACGAG	2 cut(s)	419, 794
Bst2UI	CCWGG	2 cut(s)	801, 1043
Bst4CI	ACNGT	2 cut(s)	264, 1057
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	2 cut(s)	321, 406
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstC8I	GCNNGC	4 cut(s)	84, 224, 237, 709
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	1237
BstH2I	RGCGCY	2 cut(s)	76, 109
BstHHI	GCGC	4 cut(s)	75, 108, 228, 356
BstKTI	GATC	4 cut(s)	14, 148, 766, 1000
BstMAI	GTCTC	5 cut(s)	159, 413, 440, 775, 1140
BstMBI	GATC	4 cut(s)	11, 145, 763, 997
BstMCI	CGRYCG	2 cut(s)	148, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 92, 232, 327, 619
BstNI	CCWGG	2 cut(s)	801, 1043
BstSCI	CCNGG	4 cut(s)	108, 672, 799, 1041
BstSFI	CTRYAG	1 cut(s)	952
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	5 cut(s)	82, 107, 226, 954, 1021
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	251
BtgZI	GCGATG	2 cut(s)	300, 306
BtsCI	GGATG	1 cut(s)	1237
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	708
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	4 cut(s)	84, 224, 237, 709
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	4 cut(s)	75, 108, 228, 356
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	2 cut(s)	310, 395
Csp6I	GTAC	3 cut(s)	178, 202, 1037
CviAII	CATG	3 cut(s)	484, 614, 1270
CviQI	GTAC	3 cut(s)	178, 202, 1037
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	4 cut(s)	13, 147, 765, 999
DpnII	GATC	4 cut(s)	11, 145, 763, 997
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	2 cut(s)	155, 1070
Eco130I	CCWWGG	2 cut(s)	39, 565
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	799, 1041
EcoT14I	CCWWGG	2 cut(s)	39, 565
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	39, 565
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	3 cut(s)	487, 617, 1273
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	3 cut(s)	483, 613, 1269
FauNDI	CATATG	1 cut(s)	925
Fnu4HI	GCNGC	7 cut(s)	71, 96, 240, 319, 497, 968, 1010
FokI	GGATG	1 cut(s)	1244
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	7 cut(s)	71, 96, 240, 319, 497, 968, 1010
FspBI	CTAG	2 cut(s)	566, 1242
GlaI	GCGC	4 cut(s)	74, 107, 227, 355
GluI	GCNGC	7 cut(s)	71, 96, 240, 319, 497, 968, 1010
GsuI	CTGGAG	1 cut(s)	799
HaeII	RGCGCY	2 cut(s)	76, 109
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	4 cut(s)	109, 137, 674, 748
HgaI	GACGC	2 cut(s)	310, 395
HhaI	GCGC	4 cut(s)	75, 108, 228, 356
Hin1I	GRCGYC	2 cut(s)	321, 406
Hin1II	CATG	3 cut(s)	487, 617, 1273
Hin6I	GCGC	4 cut(s)	73, 106, 226, 354
HinP1I	GCGC	4 cut(s)	73, 106, 226, 354
HindIII	AAGCTT	2 cut(s)	554, 742
HinfI	GANTC	4 cut(s)	208, 665, 819, 919
HpaII	CCGG	4 cut(s)	109, 137, 674, 748
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	6 cut(s)	204, 270, 547, 660, 860, 1039
Hpy188I	TCNGA	7 cut(s)	413, 428, 730, 918, 1075, 1145, 1308
Hpy188III	TCNNGA	3 cut(s)	419, 767, 1242
Hpy8I	GTNNAC	6 cut(s)	204, 270, 547, 660, 860, 1039
HpyAV	CCTTC	7 cut(s)	255, 981, 1073, 1248, 1276, 1301, 1310
HpyCH4III	ACNGT	2 cut(s)	264, 1057
HpyCH4IV	ACGT	1 cut(s)	1133
HpyCH4V	TGCA	4 cut(s)	373, 701, 793, 913
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 92, 232, 327, 619
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	1133
Hsp92I	GRCGYC	2 cut(s)	321, 406
Hsp92II	CATG	3 cut(s)	487, 617, 1273
HspAI	GCGC	4 cut(s)	73, 106, 226, 354
Kzo9I	GATC	4 cut(s)	11, 145, 763, 997
LmnI	GCTCC	3 cut(s)	247, 335, 519
Lsp1109I	GCAGC	5 cut(s)	82, 107, 226, 954, 1021
LweI	GCATC	1 cut(s)	922
MaeI	CTAG	2 cut(s)	566, 1242
MaeII	ACGT	1 cut(s)	1133
MalI	GATC	4 cut(s)	13, 147, 765, 999
MboI	GATC	4 cut(s)	11, 145, 763, 997
MboII	GAAGA	7 cut(s)	71, 74, 194, 514, 517, 694, 1111
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	2 cut(s)	332, 836
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	9 cut(s)	17, 257, 276, 607, 863, 985, 1024, 1175, 1301
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	436, 907
MnlI	CCTC	8 cut(s)	173, 178, 415, 535, 639, 1194, 1204, 1313
Mox20I	TGGCCA	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	643
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	512, 828
MslI	CAYNNNNRTG	2 cut(s)	908, 1193
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	3 cut(s)	967, 1033, 1298
MspI	CCGG	4 cut(s)	109, 137, 674, 748
MspR9I	CCNGG	4 cut(s)	110, 674, 801, 1043
Mva1269I	GAATGC	2 cut(s)	522, 1127
MvaI	CCWGG	2 cut(s)	801, 1043
MwoI	GCNNNNNNNGC	5 cut(s)	79, 92, 232, 327, 619
NciI	CCSGG	2 cut(s)	110, 674
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	4 cut(s)	11, 145, 763, 997
NlaIII	CATG	3 cut(s)	487, 617, 1273
NlaIV	GGNNCC	2 cut(s)	331, 1264
NsiI	ATGCAT	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 653
PctI	GAATGC	2 cut(s)	522, 1127
PdmI	GAANNNNTTC	1 cut(s)	643
PfeI	GAWTC	4 cut(s)	208, 665, 819, 919
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	72, 97, 241, 320, 498, 969, 1011
Ple19I	CGATCG	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	799, 1041
PspGI	CCWGG	2 cut(s)	799, 1041
PspN4I	GGNNCC	2 cut(s)	331, 1264
PspPI	GGNCC	1 cut(s)	424
PsrI	GAACNNNNNNTAC	2 cut(s)	677, 709
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	148
PvuII	CAGCTG	3 cut(s)	967, 1033, 1298
RsaI	GTAC	3 cut(s)	179, 203, 1038
RsaNI	GTAC	3 cut(s)	178, 202, 1037
RseI	CAYNNNNRTG	2 cut(s)	908, 1193
SaqAI	TTAA	2 cut(s)	512, 828
SatI	GCNGC	7 cut(s)	71, 96, 240, 319, 497, 968, 1010
Sau3AI	GATC	4 cut(s)	11, 145, 763, 997
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	4 cut(s)	110, 674, 801, 1043
SduI	GDGCHC	2 cut(s)	332, 836
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	1 cut(s)	952
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	908, 1193
Sse9I	AATT	9 cut(s)	17, 257, 276, 607, 863, 985, 1024, 1175, 1301
SsiI	CCGC	6 cut(s)	140, 151, 318, 348, 497, 1081
SspMI	CTAG	2 cut(s)	566, 1242
StyD4I	CCNGG	4 cut(s)	108, 672, 799, 1041
StyI	CCWWGG	2 cut(s)	39, 565
TaaI	ACNGT	2 cut(s)	264, 1057
TaiI	ACGT	1 cut(s)	1136
TaqI	TCGA	2 cut(s)	807, 813
TaqII	GACCGA	1 cut(s)	831
TasI	AATT	9 cut(s)	17, 257, 276, 607, 863, 985, 1024, 1175, 1301
TauI	GCSGC	2 cut(s)	321, 499
TfiI	GAWTC	4 cut(s)	208, 665, 819, 919
Tru1I	TTAA	2 cut(s)	512, 828
Tru9I	TTAA	2 cut(s)	512, 828
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	5 cut(s)	70, 95, 239, 967, 1009
TspDTI	ATGAA	4 cut(s)	630, 963, 998, 1258
TspGWI	ACGGA	3 cut(s)	268, 645, 651
TspRI	CASTG	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	4 cut(s)	17, 276, 1175, 1301
XbaI	TCTAGA	1 cut(s)	1241
XcmI	CCANNNNNNNNNTGG	4 cut(s)	340, 774, 890, 1030
XmaJI	CCTAGG	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	2 cut(s)	566, 1242
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.