Rh5DG309300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010590
Physical Location & Seq
Reverse (-)
39507237 .. 39507704
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG309300.1

Sequence Viewer

Length: 468 bp
ATGAGCAGTTTGCGCCAGGAAAAGAAAGCCTTCATTCCCGACGATCATCGCTCTCTATACCTCTGCTTCGGTGACTACGAAGACGGCAGCAAGGTCTCCTACACCATTCTATCACTCAGCTTGCGCCAACTGTTTTCTGCTTCATCTTCTCCACGGCAATTACAGTTGGTTACTAGGTTATCCGGCGATGGTCTTCCCCGTTATATGAGTTGCGGCATTTGGGGCTCCAAAATTCTTCTCTGGGGTGGCGCAAAACCGGGTTATTTCCATAATCCGACACGAGGGCAGCCTGTTACTGGGTGTTTCATGCATCACCAAGTCATAAAGATCTACTGTTTTGAGACTACGGAAGATAAGTATATAAAATACCTCGGGAGTGGCATCACGAGGGCAACCGGTTACTGGGTGTTTCATGCATCACCAAGTCAGAAAGATCTACTGTTTTGCCACTCCCGAAGAAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.68

Weight (kDa)

9.41

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 281, 296, 402
AgeI ACCGGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 100, 335
Ama87I CYCGRG 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 87, 286
ApoI RAATTY 1 cut(s) 231
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 3 cut(s) 15, 126, 251
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 83, 305, 411
AvaI CYCGRG 1 cut(s) 371
BanII GRGCYC 1 cut(s) 227
BauI CACGAG 2 cut(s) 279, 385
BbsI GAAGAC 2 cut(s) 87, 185
BbvI GCAGC 2 cut(s) 99, 298
BccI CCATC 1 cut(s) 182
BceAI ACGGC 2 cut(s) 100, 170
BciT130I CCWGG 1 cut(s) 17
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 100, 335
BfaI CTAG 1 cut(s) 174
BglII AGATCT 2 cut(s) 327, 433
BisI GCNGC 3 cut(s) 88, 214, 287
BlsI GCNGC 3 cut(s) 89, 215, 288
Bme1390I CCNGG 2 cut(s) 17, 258
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 17, 258
BmrI ACTGGG 2 cut(s) 306, 412
BmsI GCATC 3 cut(s) 319, 390, 425
BmuI ACTGGG 2 cut(s) 306, 412
BpiI GAAGAC 2 cut(s) 87, 185
BpuMI CCSGG 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 152, 370
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 296, 402
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 2 cut(s) 301, 407
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 152, 370
BseLI CCNNNNNNNGG 3 cut(s) 281, 296, 402
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 301, 407
BseXI GCAGC 2 cut(s) 99, 298
BshTI ACCGGT 1 cut(s) 395
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 183, 257, 396
BslI CCNNNNNNNGG 3 cut(s) 281, 296, 402
BsmAI GTCTC 2 cut(s) 100, 335
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 43, 327, 433
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 2 cut(s) 301, 407
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 152, 370
BssMI GATC 3 cut(s) 43, 327, 433
BssSI CACGAG 2 cut(s) 279, 385
Bst2BI CACGAG 2 cut(s) 279, 385
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 4 cut(s) 132, 165, 335, 441
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 152
BstHHI GCGC 3 cut(s) 15, 126, 251
BstKTI GATC 3 cut(s) 46, 330, 436
BstMAI GTCTC 2 cut(s) 100, 335
BstMBI GATC 3 cut(s) 43, 327, 433
BstMWI GCNNNNNNNGC 2 cut(s) 12, 222
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 15, 256
BstV1I GCAGC 2 cut(s) 99, 298
BstV2I GAAGAC 2 cut(s) 87, 185
BstX2I RGATCY 2 cut(s) 327, 433
BstYI RGATCY 2 cut(s) 327, 433
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 32, 201
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 3 cut(s) 15, 126, 251
Cfr10I RCCGGY 1 cut(s) 395
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 2 cut(s) 307, 413
CviJI RGCY 4 cut(s) 29, 120, 225, 289
CviKI_1 RGCY 4 cut(s) 29, 120, 225, 289
DdeI CTNAG 1 cut(s) 116
DpnI GATC 3 cut(s) 45, 329, 435
DpnII GATC 3 cut(s) 43, 327, 433
Eco24I GRGCYC 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 15
EcoT22I ATGCAT 2 cut(s) 312, 418
EcoT38I GRGCYC 1 cut(s) 227
FaeI CATG 2 cut(s) 310, 416
FaiI YATR 9 cut(s) 58, 204, 206, 270, 308, 323, 360, 362, 414
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 2 cut(s) 306, 412
Fnu4HI GCNGC 3 cut(s) 88, 214, 287
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 88, 214, 287
FspBI CTAG 1 cut(s) 174
GlaI GCGC 3 cut(s) 14, 125, 250
GluI GCNGC 3 cut(s) 88, 214, 287
HapII CCGG 3 cut(s) 183, 257, 396
HhaI GCGC 3 cut(s) 15, 126, 251
Hin1II CATG 2 cut(s) 310, 416
Hin6I GCGC 3 cut(s) 13, 124, 249
HinP1I GCGC 3 cut(s) 13, 124, 249
HpaII CCGG 3 cut(s) 183, 257, 396
HphI GGTGA 3 cut(s) 83, 305, 411
Hpy188I TCNGA 2 cut(s) 276, 429
Hpy188III TCNNGA 4 cut(s) 38, 373, 385, 453
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 4 cut(s) 132, 165, 335, 441
HpyCH4V TGCA 2 cut(s) 310, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 222
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 310, 416
HspAI GCGC 3 cut(s) 13, 124, 249
Kzo9I GATC 3 cut(s) 43, 327, 433
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 9 cut(s) 2, 29, 196, 226, 270, 282, 303, 388, 409
Lsp1109I GCAGC 2 cut(s) 99, 298
LweI GCATC 3 cut(s) 319, 390, 425
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 4 cut(s) 71, 169, 292, 398
MalI GATC 3 cut(s) 45, 329, 435
MboI GATC 3 cut(s) 43, 327, 433
MboII GAAGA 6 cut(s) 92, 138, 185, 227, 362, 468
MflI RGATCY 2 cut(s) 327, 433
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 2 cut(s) 158, 231
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 4 cut(s) 71, 275, 380, 381
Mph1103I ATGCAT 2 cut(s) 312, 418
MroXI GAANNNNTTC 1 cut(s) 29
MspI CCGG 3 cut(s) 183, 257, 396
MspR9I CCNGG 2 cut(s) 17, 258
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 12, 222
NciI CCSGG 1 cut(s) 258
NdeII GATC 3 cut(s) 43, 327, 433
NlaIII CATG 2 cut(s) 310, 416
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 2 cut(s) 312, 418
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 3 cut(s) 89, 215, 288
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 226
PsuI RGATCY 2 cut(s) 327, 433
SatI GCNGC 3 cut(s) 88, 214, 287
Sau3AI GATC 3 cut(s) 43, 327, 433
ScrFI CCNGG 2 cut(s) 17, 258
SduI GDGCHC 1 cut(s) 227
SetI ASST 5 cut(s) 63, 96, 122, 179, 372
SfaNI GCATC 3 cut(s) 319, 390, 425
Sse9I AATT 2 cut(s) 158, 231
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 15, 256
TaaI ACNGT 4 cut(s) 132, 165, 335, 441
TasI AATT 2 cut(s) 158, 231
TauI GCSGC 1 cut(s) 216
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 87, 286
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 22, 132, 295, 401
TspGWI ACGGA 1 cut(s) 362
XapI RAATTY 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 2 cut(s) 312, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.