Rh5BG299800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010590
Physical Location & Seq
Reverse (-)
38681639 .. 38682484
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG299800.1

Sequence Viewer

Length: 846 bp
ATGCATCACCAAGTCAGAAAGATCTACTGTTTTGAGACAACAGAAGAGACTCAAGTGCCGGTGCCGCTCCCTAAGAAGATGCTGAATGGGAACATCCAGCCCCGACTGGTGGAGGTGGACAACAAATTATACGTTATTGGTACATCATTATCTTCCTTTGAGATGTTTGATGGCAATGATTGGTCTGAACTGGCACCACCTCCGATCGGATACTATTTCTGTTATCCATTTACACACTCAGACCCGGCTTATCACTTCGATATATATTATGCAGTTGCAAGCACAAATATATTGGTTTCTGTTGGTGGTTCAAGCTTCCGCTTTGACACAGCTAACCCTAACCAAGGTTGGAGAAAACTAATGTGGGCCGACCAATTCTCTTTTGATCAATTCTGTTTTAAGGGCACATGTTTGGTTGTGAATGATTGTAAGCAATTTGTGCTTTTCACATTCCAACCCTCCGATGGTCAGCACATATCAGTGCATCTGATTTCATATGACTTCAGTAGCATCACACAAGACTACAGTCAAGTGCAGCTGCCTTCGTACTTACTGGAATGCAAGGGTGATCGTCTTGGTGATTTTTCATTACCCAATTATCGGCTGGTACACATAGGAGATAAGGTCGTCTGCCTTCTTATGTCTGAACTTCGGCCCAGTGGAGTGGATGAGAGGAAGAAGAAGATGATTAGATCTGTTGAATTTGCCGCATTCACATTCAAAGTCAAAGACAATGCTAAGTCCTTGAAAATCAGATTTTTACCTCGTACTCCAAAGCTCATATATGATGATGATATGGACGTGGCTTTTAGGGCTGGACAGATGCTTGGTGCCTTCTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.27

Weight (kDa)

6.38

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 10 - 256 4.6e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 61, 193, 830
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 3 cut(s) 65, 319, 708
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 487
AfaI GTAC 4 cut(s) 142, 548, 609, 769
AfiI CCNNNNNNNGG 5 cut(s) 109, 206, 344, 464, 600
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 4 cut(s) 312, 701, 721, 748
AjiI CACGTC 1 cut(s) 802
AluBI AGCT 4 cut(s) 315, 332, 538, 778
AluI AGCT 4 cut(s) 315, 332, 538, 778
Alw26I GTCTC 2 cut(s) 29, 41
AoxI GGCC 2 cut(s) 366, 653
ApeKI GCWGC 2 cut(s) 535, 538
ApoI RAATTY 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 366, 654
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 578, 590
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 3 cut(s) 61, 193, 830
BbvI GCAGC 2 cut(s) 525, 547
BccI CCATC 2 cut(s) 164, 458
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 29, 41
BfmI CTRYAG 1 cut(s) 523
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 2 cut(s) 21, 692
BisI GCNGC 4 cut(s) 65, 536, 539, 708
BlsI GCNGC 4 cut(s) 66, 537, 540, 709
Bme1390I CCNGG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 802
BmgT120I GGNCC 2 cut(s) 366, 654
BmiI GGNNCC 3 cut(s) 63, 195, 832
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 5 cut(s) 13, 69, 493, 519, 813
BmuI ACTGGG 1 cut(s) 651
BoxI GACNNNNGTC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 206, 344, 464, 600
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 4 cut(s) 111, 195, 558, 657
Bse3DI GCAATG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 2 cut(s) 93, 673
BseLI CCNNNNNNNGG 5 cut(s) 109, 206, 344, 464, 600
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 4 cut(s) 111, 195, 558, 657
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 2 cut(s) 525, 547
BsgI GTGCAG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 368, 655
BshNI GGYRCC 3 cut(s) 61, 193, 830
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 2 cut(s) 59, 245
BslI CCNNNNNNNGG 5 cut(s) 109, 206, 344, 464, 600
BsmAI GTCTC 2 cut(s) 29, 41
BsmI GAATGC 2 cut(s) 563, 710
BsnI GGCC 2 cut(s) 368, 655
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 5 cut(s) 21, 204, 385, 568, 692
BspACI CCGC 3 cut(s) 65, 319, 708
BspANI GGCC 2 cut(s) 368, 655
BspCNI CTCAG 1 cut(s) 251
BspLI GGNNCC 3 cut(s) 63, 195, 832
BspT107I GGYRCC 3 cut(s) 61, 193, 830
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 4 cut(s) 111, 195, 558, 657
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 5 cut(s) 21, 204, 385, 568, 692
BssT1I CCWWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 29, 527
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 3 cut(s) 72, 238, 738
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 93, 673
BstKTI GATC 5 cut(s) 24, 207, 388, 571, 695
BstMAI GTCTC 2 cut(s) 29, 41
BstMBI GATC 5 cut(s) 21, 204, 385, 568, 692
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 3 cut(s) 64, 439, 812
BstNSI RCATGY 1 cut(s) 411
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 525, 547
BstX2I RGATCY 2 cut(s) 21, 692
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 2 cut(s) 21, 692
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 368, 655
BtrI CACGTC 1 cut(s) 802
BtsCI GGATG 2 cut(s) 93, 673
BtsIMutI CAGTG 2 cut(s) 486, 664
Cac8I GCNNGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 366, 654
Csp6I GTAC 4 cut(s) 141, 547, 608, 768
CviAII CATG 1 cut(s) 408
CviQI GTAC 4 cut(s) 141, 547, 608, 768
DdeI CTNAG 3 cut(s) 72, 238, 738
DpnI GATC 5 cut(s) 23, 206, 387, 570, 694
DpnII GATC 5 cut(s) 21, 204, 385, 568, 692
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 411
FatI CATG 1 cut(s) 407
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 65, 536, 539, 708
FokI GGATG 2 cut(s) 80, 680
Fsp4HI GCNGC 4 cut(s) 65, 536, 539, 708
GluI GCNGC 4 cut(s) 65, 536, 539, 708
HaeIII GGCC 2 cut(s) 368, 655
HapII CCGG 2 cut(s) 59, 245
Hin1II CATG 1 cut(s) 411
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 1 cut(s) 49
HpaII CCGG 2 cut(s) 59, 245
HphI GGTGA 2 cut(s) 578, 590
Hpy166II GTNNAC 2 cut(s) 118, 610
Hpy188I TCNGA 9 cut(s) 17, 187, 204, 209, 241, 463, 489, 646, 755
Hpy8I GTNNAC 2 cut(s) 118, 610
HpyAV CCTTC 3 cut(s) 552, 644, 844
HpyCH4III ACNGT 2 cut(s) 29, 527
HpyCH4IV ACGT 2 cut(s) 132, 801
HpyCH4V TGCA 6 cut(s) 4, 272, 278, 484, 535, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 439, 812
HpyF3I CTNAG 3 cut(s) 72, 238, 738
HpySE526I ACGT 2 cut(s) 132, 801
Hsp92II CATG 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 21, 204, 385, 568, 692
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 9 cut(s) 72, 92, 110, 176, 258, 539, 590, 670, 801
Lsp1109I GCAGC 2 cut(s) 525, 547
LweI GCATC 5 cut(s) 13, 69, 493, 519, 813
MaeII ACGT 2 cut(s) 132, 801
MalI GATC 5 cut(s) 23, 206, 387, 570, 694
MbiI CCGCTC 1 cut(s) 67
MboI GATC 5 cut(s) 21, 204, 385, 568, 692
MboII GAAGA 6 cut(s) 56, 88, 144, 688, 691, 694
MflI RGATCY 2 cut(s) 21, 692
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 6 cut(s) 125, 374, 389, 434, 595, 701
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 329, 478
MnlI CCTC 5 cut(s) 106, 210, 469, 666, 774
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 2 cut(s) 59, 245
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 2 cut(s) 563, 710
MwoI GCNNNNNNNGC 3 cut(s) 64, 439, 812
NciI CCSGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 496
NdeII GATC 5 cut(s) 21, 204, 385, 568, 692
NlaIII CATG 1 cut(s) 411
NlaIV GGNNCC 3 cut(s) 63, 195, 832
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 411
PciI ACATGT 1 cut(s) 407
PctI GAATGC 2 cut(s) 563, 710
PkrI GCNGC 4 cut(s) 66, 537, 540, 709
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PscI ACATGT 1 cut(s) 407
PshAI GACNNNNGTC 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 63, 195, 832
PspPI GGNCC 2 cut(s) 366, 654
PsuI RGATCY 2 cut(s) 21, 692
PvuI CGATCG 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 4 cut(s) 142, 548, 609, 769
RsaNI GTAC 4 cut(s) 141, 547, 608, 768
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 4 cut(s) 65, 536, 539, 708
Sau3AI GATC 5 cut(s) 21, 204, 385, 568, 692
Sau96I GGNCC 2 cut(s) 366, 654
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 407
SfaNI GCATC 5 cut(s) 13, 69, 493, 519, 813
SfcI CTRYAG 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 6 cut(s) 125, 374, 389, 434, 595, 701
SsiI CCGC 3 cut(s) 65, 319, 708
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 29, 527
TaiI ACGT 2 cut(s) 135, 804
TaqI TCGA 1 cut(s) 258
TasI AATT 6 cut(s) 125, 374, 389, 434, 595, 701
TauI GCSGC 2 cut(s) 67, 710
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 2 cut(s) 486, 664
TseI GCWGC 2 cut(s) 535, 538
TspDTI ATGAA 2 cut(s) 483, 576
TspRI CASTG 2 cut(s) 486, 664
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 701
XceI RCATGY 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 2 cut(s) 461, 601
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.