RLG00000034215

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010590
Physical Location & Seq
Reverse (-)
38644183 .. 38645160
978 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034215

Sequence Viewer

Length: 903 bp
ATGGTCTTCTTCGCTATGTGGGTTGCAGTGTTTGGGACTCCAAAATTCTCCTCAGGGGTGGCACAAAACCAACTTATTTGCATTGTCCAAGTCAAGGGCAGCCGGCTAGTGGGTGTTTTATACATCACGAGGTCAGAAAAGATATACTATATTGAGACTATGGGGGAGGCCCAGGTGCCCATGCCACTCCCGAAGAAGATGTTGAAAGGGAATATTCAACCCTTACTAGTGGAGGTGAACGACAAACTCTACGCTCTTGGTAAATCTTTACCCTCTTTTGAAATGTTTGACGGCAATGATTGGTTTGAGTTGGCACCACCTCCACACGGAACTTATTTTTGTTATCCCTTTACACACTCAGACCCAGCTTTTCAGTTCGATGCATACTATGCAGTTGCTGGCACAAATATATTCGTTTTTGATGGTGGTTCAAGCTTCCACTTTGACACAAGTGACCCCAAGCAAGGCTGGAGAAGACTAATGTCAGCCAACCAATTCTCTTTCGACCCATTCTATTTTAAGGGCACAAGTTTAGTTGTGAATGATGGTAAACACATCACACAAGACTACAGTCGTGTGCTGCCTCCATACTTGATGGAATACAAGGATGATTGTCTTGGTGATCTTCCATTACCTAATTATCGACTGGTACACATAGGAGATAACGCTATCTGCCTTCTTACGTCTAAACTCCTCCCCAATAGAGTGGATGAGAGGAAGAAGAAGATGATTAGGTGTGTTGAATTCGCAGCATTCACATTCAAAGTCAGAGACAATGGTAGACTATCCTTAAAAATCAGATTCCTGCCTCATACCCCAAAGCTCATATATGATGATGACAATGATGATGATATGGACATGGCTTCTAGGGCTGGACAGATGCTTGGTGCCTTCTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.18

Weight (kDa)

6.59

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 21 - 160 3e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 175, 313, 887
AccI GTMKAC 1 cut(s) 781
AcsI RAATTY 2 cut(s) 44, 743
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 4 cut(s) 94, 109, 326, 464
AgsI TTSAA 6 cut(s) 205, 218, 281, 432, 743, 763
AhlI ACTAGT 1 cut(s) 226
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 3 cut(s) 368, 435, 823
AluI AGCT 3 cut(s) 368, 435, 823
Alw26I GTCTC 2 cut(s) 149, 765
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 99, 580, 749
ApoI RAATTY 2 cut(s) 44, 743
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 247, 632
AxyI CCTNAGG 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 180, 527
BanI GGYRCC 3 cut(s) 175, 313, 887
BauI CACGAG 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 111, 567, 761
BccI CCATC 3 cut(s) 416, 539, 589
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 149, 765
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 3 cut(s) 107, 227, 867
BfmI CTRYAG 1 cut(s) 568
BisI GCNGC 3 cut(s) 100, 581, 750
BlsI GCNGC 3 cut(s) 101, 582, 751
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 3 cut(s) 177, 315, 889
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 370, 870
BoxI GACNNNNGTC 2 cut(s) 481, 570
BpiI GAAGAC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 490
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 109, 326, 464
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 651
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 613, 715
BseLI CCNNNNNNNGG 4 cut(s) 94, 109, 326, 464
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 66, 372
BseNI ACTGG 1 cut(s) 651
BseRI GAGGAG 2 cut(s) 40, 683
BseSI GKGCMC 2 cut(s) 180, 527
BseXI GCAGC 3 cut(s) 111, 567, 761
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 3 cut(s) 175, 313, 887
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 4 cut(s) 94, 109, 326, 464
BsmAI GTCTC 2 cut(s) 149, 765
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 752
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 180, 527
Bsp143I GATC 1 cut(s) 622
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 65, 371
BspLI GGNNCC 3 cut(s) 177, 315, 889
BspT107I GGYRCC 3 cut(s) 175, 313, 887
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 1 cut(s) 651
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 622
BssSI CACGAG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 104, 400
BstDEI CTNAG 2 cut(s) 52, 358
BstF5I GGATG 2 cut(s) 613, 715
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 2 cut(s) 149, 765
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 2 cut(s) 389, 869
BstNI CCWGG 1 cut(s) 173
BstPAI GACNNNNGTC 2 cut(s) 481, 570
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 2 cut(s) 180, 527
BstV1I GCAGC 3 cut(s) 111, 567, 761
BstV2I GAAGAC 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 706
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 613, 715
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 104, 400
CaiI CAGNNNCTG 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 650
CviAII CATG 2 cut(s) 181, 859
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 2 cut(s) 52, 358
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
Eco81I CCTNAGG 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 385
FaeI CATG 2 cut(s) 184, 862
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 180, 858
FblI GTMKAC 1 cut(s) 781
Fnu4HI GCNGC 3 cut(s) 100, 581, 750
FokI GGATG 2 cut(s) 620, 722
Fsp4HI GCNGC 3 cut(s) 100, 581, 750
FspBI CTAG 3 cut(s) 107, 227, 867
GluI GCNGC 3 cut(s) 100, 581, 750
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 490
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 103
Hin1II CATG 2 cut(s) 184, 862
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 2 cut(s) 37, 801
HpaII CCGG 1 cut(s) 103
HphI GGTGA 2 cut(s) 247, 632
Hpy166II GTNNAC 4 cut(s) 238, 551, 652, 782
Hpy188I TCNGA 4 cut(s) 136, 361, 770, 800
Hpy188III TCNNGA 2 cut(s) 127, 190
Hpy8I GTNNAC 4 cut(s) 238, 551, 652, 782
HpyAV CCTTC 2 cut(s) 686, 901
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 4 cut(s) 26, 81, 383, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 869
HpyF3I CTNAG 2 cut(s) 52, 358
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 2 cut(s) 184, 862
KroI GCCGGC 1 cut(s) 102
KroNI GCCGGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 622
Lsp1109I GCAGC 3 cut(s) 111, 567, 761
LweI GCATC 2 cut(s) 370, 870
MaeI CTAG 3 cut(s) 107, 227, 867
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 1 cut(s) 452
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 7 cut(s) 205, 208, 486, 617, 730, 733, 736
MhlI GDGCHC 2 cut(s) 180, 527
MluCI AATT 4 cut(s) 44, 494, 637, 743
MlyI GAGTC 1 cut(s) 31
Mph1103I ATGCAT 1 cut(s) 385
MroNI GCCGGC 1 cut(s) 102
MseI TTAA 2 cut(s) 519, 791
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 752
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 389, 869
NaeI GCCGGC 1 cut(s) 104
NdeII GATC 1 cut(s) 622
NgoMIV GCCGGC 1 cut(s) 102
NlaIII CATG 2 cut(s) 184, 862
NlaIV GGNNCC 3 cut(s) 177, 315, 889
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 385
PctI GAATGC 1 cut(s) 752
PdiI GCCGGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 801
PkrI GCNGC 3 cut(s) 101, 582, 751
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshAI GACNNNNGTC 2 cut(s) 481, 570
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 3 cut(s) 177, 315, 889
PspPI GGNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 519, 791
SatI GCNGC 3 cut(s) 100, 581, 750
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 180, 527
SfaNI GCATC 2 cut(s) 370, 870
SfcI CTRYAG 1 cut(s) 568
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 4 cut(s) 44, 494, 637, 743
SspI AATATT 1 cut(s) 214
SspMI CTAG 3 cut(s) 107, 227, 867
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 1 cut(s) 686
TaqI TCGA 3 cut(s) 378, 504, 643
TasI AATT 4 cut(s) 44, 494, 637, 743
TfiI GAWTC 1 cut(s) 801
Tru1I TTAA 2 cut(s) 519, 791
Tru9I TTAA 2 cut(s) 519, 791
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 3 cut(s) 99, 580, 749
Tsp45I GTSAC 1 cut(s) 452
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 33
XapI RAATTY 2 cut(s) 44, 743
XmiI GTMKAC 1 cut(s) 781
XspI CTAG 3 cut(s) 107, 227, 867
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.