Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008441.1

Orthogroup ID

OG0010590

Physical Location & Seq

Genomic Coordinates Reverse (-)

26902 .. 28167

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008441.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atgtcgtatagatcgaaattcccgttaaagagcaagagcaagaagaatgcggatgaagaagacaaggcggaaaaaggaagaaaagagactattcagcgctctctcttggtggcggcagggaagcgattgatgagcaatctgcgccaggaaaagaaagccttcattcccgacgatcatcgctctctatacctctgcttcggtgactacgaagagggcagcaaggtctcctacaccattctatcactcagcttgcggcaactgttttctgcttcatcttcgccatggcaattacagctggttactagattatccggcgatggccttccccgttatatgggttgcggcgtttggggctccaaaattctctttgggggtggcgcaaaaccgggttatttgcatcgtccggcacgagggcacccgattattgggcgtttcatgcatcaccaagtcagaaagatttactattttgagactacagaagagactcaggtgccggtgccactcccgaagaagatgctgaatgggaacatccagccccggctggtggaggtggacaacaaagtatacgctattggtaaatcatcatcctcctttgagatgtttgatggcaatgattggtgtgaactggcaccacctccaatcagaaaatatttctgttatccctttacacactccgacccggcttgtcagttcgatatatactgtgcagttgcagacacaaatatattggtttctgatggtggttcaagcttccgctttgacacagctgaccccaaccaaggctggagaaaactaatgtgggccgataaattctgttttaagggcacctgtttggttgtggatgatggtaagcaatttgtgcttttcacattccaaccctccgatggtcagcacatatcagtgcatttgatttcatatgacttcaatagcatcacacaagactacagtcaagtgcagctgccttcgtacttaatggaatgcaagggtgatcgtcttggtgatttttcattacctaattaccagctggtacacctaggagataaggccgtctgccttcttatgtctgaacttcgccccagtggagtggatgagagggagaagaagatgatcaggtctgttgaatttgccacattcacattcaaagtgaaagacaatgctaagtccttgaaaatcagatttctacctcgtactccaaagctcatatatgatgatgatatggacgtggcttctagggctggacagatgcttggtgccttcttgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

47.84

Weight (kDa)

8.89

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04500
rosa_chinensis	RchiOBHm_Chr5g0043731 RchiOBHm_Chr5g0043771
rosa_laevigata	RLG00000034212 RLG00000034214 RLG00000034215
rosa_multiflora	Rmu_sc0002448.1_g000008 Rmu_sc0008441.1_g000004 Rmu_sc0008441.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037290
rosa_rugosa	Rorug05G0208200 Rorug05G0208300
rosa_samantha	Rh5BG299500 Rh5BG299800 Rh5BG299900 Rh5BG300300 Rh5DG308500 Rh5DG308700 Rh5DG308800 Rh5DG309200 Rh5DG309300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	6 cut(s)	414, 490, 496, 628, 824, 1250
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	6 cut(s)	50, 68, 113, 253, 342, 754
AcsI	RAATTY	4 cut(s)	17, 360, 809, 1121
AfaI	GTAC	3 cut(s)	968, 1029, 1189
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 884
AgsI	TTSAA	5 cut(s)	747, 925, 1121, 1141, 1168
AjiI	CACGTC	1 cut(s)	1222
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	7 cut(s)	249, 295, 750, 767, 958, 1024, 1198
AluI	AGCT	7 cut(s)	249, 295, 750, 767, 958, 1024, 1198
Alw26I	GTCTC	4 cut(s)	80, 229, 464, 476
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	3 cut(s)	319, 801, 1044
ApeKI	GCWGC	3 cut(s)	216, 955, 958
ApoI	RAATTY	4 cut(s)	17, 360, 809, 1121
Asp700I	GAANNNNTTC	1 cut(s)	158
AspA2I	CCTAGG	1 cut(s)	1033
AspLEI	GCGC	3 cut(s)	99, 144, 380
AspS9I	GGNCC	1 cut(s)	801
AsuC2I	CCSGG	3 cut(s)	387, 538, 680
AsuHPI	GGTGA	4 cut(s)	212, 434, 998, 1010
AvrII	CCTAGG	1 cut(s)	1033
BaeGI	GKGCMC	2 cut(s)	417, 827
BanI	GGYRCC	6 cut(s)	414, 490, 496, 628, 824, 1250
BanII	GRGCYC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	228, 945, 967
BccI	CCATC	5 cut(s)	311, 599, 731, 839, 878
BceAI	ACGGC	1 cut(s)	1031
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	1107
BcnI	CCSGG	3 cut(s)	387, 538, 680
BcoDI	GTCTC	4 cut(s)	80, 229, 464, 476
BfaI	CTAG	3 cut(s)	303, 1034, 1230
BfmI	CTRYAG	2 cut(s)	474, 943
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	6 cut(s)	114, 217, 254, 343, 956, 959
BlnI	CCTAGG	1 cut(s)	1033
BlsI	GCNGC	6 cut(s)	115, 218, 255, 344, 957, 960
Bme1390I	CCNGG	4 cut(s)	146, 387, 538, 680
BmgBI	CACGTC	1 cut(s)	1222
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	7 cut(s)	355, 416, 492, 498, 630, 826, 1252
BmrFI	CCNGG	4 cut(s)	146, 387, 538, 680
BmrI	ACTGGG	1 cut(s)	1071
BmsI	GCATC	5 cut(s)	406, 448, 504, 939, 1233
BmuI	ACTGGG	1 cut(s)	1071
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	805
BpuMI	CCSGG	3 cut(s)	387, 538, 680
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	281, 536, 778, 1033
Bsc4I	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 884
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	630, 1077
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	281, 536, 778, 1033
BseGI	GGATG	5 cut(s)	58, 528, 584, 847, 1093
BseLI	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 884
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	259, 500
BseNI	ACTGG	2 cut(s)	630, 1077
BseSI	GKGCMC	2 cut(s)	417, 827
BseXI	GCAGC	3 cut(s)	228, 945, 967
BsgI	GTGCAG	2 cut(s)	726, 974
BshFI	GGCC	3 cut(s)	321, 803, 1046
BshNI	GGYRCC	6 cut(s)	414, 490, 496, 628, 824, 1250
BsiSI	CCGG	6 cut(s)	312, 386, 404, 494, 538, 680
BslI	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 884
BsmAI	GTCTC	4 cut(s)	80, 229, 464, 476
BsmI	GAATGC	2 cut(s)	52, 983
BsnI	GGCC	3 cut(s)	321, 803, 1046
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	356, 417, 827
Bsp143I	GATC	4 cut(s)	11, 172, 988, 1107
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	6 cut(s)	50, 68, 113, 253, 342, 754
BspANI	GGCC	3 cut(s)	321, 803, 1046
BspCNI	CTCAG	2 cut(s)	258, 499
BspLI	GGNNCC	7 cut(s)	355, 416, 492, 498, 630, 826, 1252
BspT107I	GGYRCC	6 cut(s)	414, 490, 496, 628, 824, 1250
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	630, 1077
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	4 cut(s)	281, 536, 778, 1033
BssMI	GATC	4 cut(s)	11, 172, 988, 1107
BssNAI	GTATAC	1 cut(s)	565
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	3 cut(s)	281, 778, 1033
Bst1107I	GTATAC	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	3 cut(s)	261, 704, 947
Bst6I	CTCTTC	2 cut(s)	204, 474
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	245, 486, 1158
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	5 cut(s)	58, 528, 584, 847, 1093
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	3 cut(s)	99, 144, 380
BstKTI	GATC	4 cut(s)	14, 175, 991, 1110
BstMAI	GTCTC	4 cut(s)	80, 229, 464, 476
BstMBI	GATC	4 cut(s)	11, 172, 988, 1107
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 292, 351, 436, 859, 1232
BstNI	CCWGG	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	4 cut(s)	144, 385, 536, 678
BstSFI	CTRYAG	2 cut(s)	474, 943
BstSLI	GKGCMC	2 cut(s)	417, 827
BstV1I	GCAGC	3 cut(s)	228, 945, 967
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	1084
BstZ17I	GTATAC	1 cut(s)	565
BsuRI	GGCC	3 cut(s)	321, 803, 1046
BtgI	CCRYGG	1 cut(s)	281
BtgZI	GCGATG	2 cut(s)	161, 330
BtrI	CACGTC	1 cut(s)	1222
BtsCI	GGATG	5 cut(s)	58, 528, 584, 847, 1093
BtsIMutI	CAGTG	2 cut(s)	906, 1084
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	3 cut(s)	99, 144, 380
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	967, 1028, 1188
CviAII	CATG	2 cut(s)	282, 436
CviQI	GTAC	3 cut(s)	967, 1028, 1188
DdeI	CTNAG	3 cut(s)	245, 486, 1158
DpnI	GATC	4 cut(s)	13, 174, 990, 1109
DpnII	GATC	4 cut(s)	11, 172, 988, 1107
Eam1104I	CTCTTC	2 cut(s)	204, 474
EarI	CTCTTC	2 cut(s)	204, 474
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	3 cut(s)	281, 778, 1033
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	229
Eco47III	AGCGCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	3 cut(s)	281, 778, 1033
EcoT22I	ATGCAT	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	3 cut(s)	281, 778, 1033
FaeI	CATG	2 cut(s)	285, 439
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	281, 435
FauNDI	CATATG	1 cut(s)	916
FbaI	TGATCA	1 cut(s)	1107
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	114, 217, 254, 343, 956, 959
FokI	GGATG	5 cut(s)	65, 515, 571, 854, 1100
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	6 cut(s)	114, 217, 254, 343, 956, 959
FspBI	CTAG	3 cut(s)	303, 1034, 1230
GlaI	GCGC	3 cut(s)	98, 143, 379
GluI	GCNGC	6 cut(s)	114, 217, 254, 343, 956, 959
GsuI	CTGGAG	1 cut(s)	805
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	321, 803, 1046
HapII	CCGG	6 cut(s)	312, 386, 404, 494, 538, 680
HhaI	GCGC	3 cut(s)	99, 144, 380
Hin1II	CATG	2 cut(s)	285, 439
Hin6I	GCGC	3 cut(s)	97, 142, 378
HinP1I	GCGC	3 cut(s)	97, 142, 378
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	6 cut(s)	312, 386, 404, 494, 538, 680
HphI	GGTGA	4 cut(s)	212, 434, 998, 1010
Hpy166II	GTNNAC	4 cut(s)	553, 565, 623, 1030
Hpy188I	TCNGA	7 cut(s)	452, 644, 676, 736, 883, 1066, 1175
Hpy188III	TCNNGA	2 cut(s)	167, 505
Hpy8I	GTNNAC	4 cut(s)	553, 565, 623, 1030
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	5 cut(s)	169, 332, 972, 1064, 1264
HpyCH4III	ACNGT	3 cut(s)	261, 704, 947
HpyCH4IV	ACGT	1 cut(s)	1221
HpyCH4V	TGCA	7 cut(s)	397, 439, 707, 713, 904, 955, 981
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 292, 351, 436, 859, 1232
HpyF3I	CTNAG	3 cut(s)	245, 486, 1158
HpySE526I	ACGT	1 cut(s)	1221
Hsp92II	CATG	2 cut(s)	285, 439
HspAI	GCGC	3 cut(s)	97, 142, 378
Ksp22I	TGATCA	1 cut(s)	1107
Kzo9I	GATC	4 cut(s)	11, 172, 988, 1107
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	3 cut(s)	228, 945, 967
LweI	GCATC	5 cut(s)	406, 448, 504, 939, 1233
MaeI	CTAG	3 cut(s)	303, 1034, 1230
MaeII	ACGT	1 cut(s)	1221
MaeIII	GTNAC	2 cut(s)	200, 298
MalI	GATC	4 cut(s)	13, 174, 990, 1109
MboI	GATC	4 cut(s)	11, 172, 988, 1107
MhlI	GDGCHC	3 cut(s)	356, 417, 827
MluCI	AATT	7 cut(s)	17, 287, 360, 809, 854, 1015, 1121
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	699, 898
MnlI	CCTC	9 cut(s)	200, 205, 404, 541, 598, 645, 889, 1086, 1194
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	3 cut(s)	26, 819, 971
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	4 cut(s)	295, 767, 958, 1024
MspI	CCGG	6 cut(s)	312, 386, 404, 494, 538, 680
MspR9I	CCNGG	4 cut(s)	146, 387, 538, 680
Mva1269I	GAATGC	2 cut(s)	52, 983
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	6 cut(s)	141, 292, 351, 436, 859, 1232
NciI	CCSGG	3 cut(s)	387, 538, 680
NcoI	CCATGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	4 cut(s)	11, 172, 988, 1107
NlaIII	CATG	2 cut(s)	285, 439
NlaIV	GGNNCC	7 cut(s)	355, 416, 492, 498, 630, 826, 1252
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 20, 204, 406
PctI	GAATGC	2 cut(s)	52, 983
PdmI	GAANNNNTTC	1 cut(s)	158
PkrI	GCNGC	6 cut(s)	115, 218, 255, 344, 957, 960
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PshAI	GACNNNNGTC	1 cut(s)	945
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	7 cut(s)	355, 416, 492, 498, 630, 826, 1252
PspPI	GGNCC	1 cut(s)	801
PvuII	CAGCTG	4 cut(s)	295, 767, 958, 1024
RsaI	GTAC	3 cut(s)	968, 1029, 1189
RsaNI	GTAC	3 cut(s)	967, 1028, 1188
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	3 cut(s)	26, 819, 971
SatI	GCNGC	6 cut(s)	114, 217, 254, 343, 956, 959
Sau3AI	GATC	4 cut(s)	11, 172, 988, 1107
Sau96I	GGNCC	1 cut(s)	801
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	4 cut(s)	146, 387, 538, 680
SduI	GDGCHC	3 cut(s)	356, 417, 827
SfaNI	GCATC	5 cut(s)	406, 448, 504, 939, 1233
SfcI	CTRYAG	2 cut(s)	474, 943
SmiMI	CAYNNNNRTG	1 cut(s)	899
Sse9I	AATT	7 cut(s)	17, 287, 360, 809, 854, 1015, 1121
SsiI	CCGC	6 cut(s)	50, 68, 113, 253, 342, 754
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	3 cut(s)	303, 1034, 1230
StyD4I	CCNGG	4 cut(s)	144, 385, 536, 678
StyI	CCWWGG	3 cut(s)	281, 778, 1033
TaaI	ACNGT	3 cut(s)	261, 704, 947
TaiI	ACGT	1 cut(s)	1224
TaqI	TCGA	2 cut(s)	14, 693
TasI	AATT	7 cut(s)	17, 287, 360, 809, 854, 1015, 1121
TauI	GCSGC	3 cut(s)	116, 256, 345
Tru1I	TTAA	3 cut(s)	26, 819, 971
Tru9I	TTAA	3 cut(s)	26, 819, 971
TscAI	CASTG	2 cut(s)	906, 1084
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	216, 955, 958
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	6 cut(s)	69, 151, 261, 424, 903, 996
TspRI	CASTG	2 cut(s)	906, 1084
XapI	RAATTY	4 cut(s)	17, 360, 809, 1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	881
XmaJI	CCTAGG	1 cut(s)	1033
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	3 cut(s)	303, 1034, 1230
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.