Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008441.1

Orthogroup ID

OG0010590

Physical Location & Seq

Genomic Coordinates Reverse (-)

58712 .. 60748

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008441.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atgtcgtatagattgaaattcccgttaaagagcaagagcaagaagaatgtggatgaagaagacaaggcggaaaaaggaagaaaagagactattcagcgctctctcttggtggctgcagggaagcaattgatgagcaatctgcgccaggaaaagaaagccttcattcccgacgatcatcgctctctatacctctgcttcggtgactacgaagacggcagcaaggtctcctacgccatcctatcactcagcttgcgccaactgttttctgcttcatcttcttcacggcaattacagttggttactaggttatccggcgatggtcttccccgttatatgggttgcggtgtttggggctccaaaattcttctcgggggtggcggaaaaccggtttattttcataatccgacacgagggcagccggttactgggtgtttcatgcatcaccaagtcagaaagatctactgttttgagactacggaagagactcaggtgccggtgccactcccgaagaagatgctgaatgggaacatccagccccggctggtggaggtggacaacaaagtatacgctattggtaaatcattatcttcctttgagatgtttgatggcaatgattggtgtgaactggcaccacctccaatcagaaaatatttctgttacccctttacacactccgacccggcttgtcagttcgatatatactgtgcagttgcaggcacaaatatattggtttctgatggtggttcaagcttccgctttgacacagctgaccccaaccaaggctggagaaaactaatgtgggccgatcaattctctttcgatcaattctattttaagggcacatgtttggttgtgaatgatggtaagcaatatgtgcttttcacattccaaccctccgatggtcagcacatatcagtgcatctgatttcatatgacttcaatagcatcacacaagactacagtcgagtgcagctgccttcgtacttaatggaatgcaagggtgatcatcttggtgatttttcattacccaattaccaactggtacacctaggagataaggccgtctgccttcttatgtctgaacttcgccccagtggagtggatgagagggagaagaagatgattaggtctgttgaatttgccacattcacattcaaagttaaagacaatgctaagtccttgaaaaccagatttctacctcgtactccaaagttcatatatgatgatgacaatgaagatgatgtggacgtggcttctagggctggacagatgcttggtgccttcttgctggaaaattctcaaatgaacaaggaggatcttgcagcagaatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

50.41

Weight (kDa)

7.51

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04500
rosa_chinensis	RchiOBHm_Chr5g0043731 RchiOBHm_Chr5g0043771
rosa_laevigata	RLG00000034212 RLG00000034214 RLG00000034215
rosa_multiflora	Rmu_sc0002448.1_g000008 Rmu_sc0008441.1_g000004 Rmu_sc0008441.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037290
rosa_rugosa	Rorug05G0208200 Rorug05G0208300
rosa_samantha	Rh5BG299500 Rh5BG299800 Rh5BG299900 Rh5BG300300 Rh5DG308500 Rh5DG308700 Rh5DG308800 Rh5DG309200 Rh5DG309300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	490, 496, 628, 1277
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	4 cut(s)	68, 342, 378, 754
AclWI	GGATC	1 cut(s)	1323
AcsI	RAATTY	4 cut(s)	17, 360, 1136, 1294
AfaI	GTAC	3 cut(s)	983, 1044, 1204
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 899
AflIII	ACRYGT	1 cut(s)	842
AgeI	ACCGGT	1 cut(s)	385
AgsI	TTSAA	6 cut(s)	16, 747, 940, 1136, 1156, 1183
AjiI	CACGTC	1 cut(s)	1249
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	4 cut(s)	249, 750, 767, 973
AluI	AGCT	4 cut(s)	249, 750, 767, 973
Alw26I	GTCTC	4 cut(s)	80, 229, 464, 476
AlwI	GGATC	1 cut(s)	1323
Ama87I	CYCGRG	1 cut(s)	368
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	2 cut(s)	801, 1059
ApeKI	GCWGC	6 cut(s)	113, 216, 415, 970, 973, 1322
ApoI	RAATTY	4 cut(s)	17, 360, 1136, 1294
AsiGI	ACCGGT	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	158
AspA2I	CCTAGG	1 cut(s)	1048
AspLEI	GCGC	3 cut(s)	99, 144, 255
AspS9I	GGNCC	1 cut(s)	801
AsuC2I	CCSGG	2 cut(s)	538, 680
AsuHPI	GGTGA	4 cut(s)	212, 434, 1013, 1025
AvaI	CYCGRG	1 cut(s)	368
AvrII	CCTAGG	1 cut(s)	1048
BaeGI	GKGCMC	1 cut(s)	842
BanI	GGYRCC	4 cut(s)	490, 496, 628, 1277
BanII	GRGCYC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	3 cut(s)	66, 216, 314
BbvI	GCAGC	5 cut(s)	100, 228, 427, 960, 982
BccI	CCATC	6 cut(s)	242, 311, 599, 731, 854, 893
BceAI	ACGGC	3 cut(s)	229, 299, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	2 cut(s)	538, 680
BcoDI	GTCTC	4 cut(s)	80, 229, 464, 476
BfaI	CTAG	3 cut(s)	303, 1049, 1257
BfmI	CTRYAG	2 cut(s)	114, 958
BfoI	RGCGCY	1 cut(s)	100
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	6 cut(s)	114, 217, 416, 971, 974, 1323
BlnI	CCTAGG	1 cut(s)	1048
BlsI	GCNGC	6 cut(s)	115, 218, 417, 972, 975, 1324
Bme1390I	CCNGG	3 cut(s)	146, 538, 680
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	1249
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	5 cut(s)	355, 492, 498, 630, 1279
BmrFI	CCNGG	3 cut(s)	146, 538, 680
BmrI	ACTGGG	2 cut(s)	435, 1086
BmsI	GCATC	5 cut(s)	448, 504, 928, 954, 1260
BmuI	ACTGGG	2 cut(s)	435, 1086
BoxI	GACNNNNGTC	1 cut(s)	960
BpiI	GAAGAC	3 cut(s)	66, 216, 314
BpmI	CTGGAG	1 cut(s)	805
BpuMI	CCSGG	2 cut(s)	538, 680
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	536, 778, 1048
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 899
Bse118I	RCCGGY	3 cut(s)	385, 418, 493
Bse1I	ACTGG	4 cut(s)	430, 630, 1044, 1092
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	536, 778, 1048
BseGI	GGATG	4 cut(s)	58, 234, 528, 1108
BseLI	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 899
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	259, 500
BseNI	ACTGG	4 cut(s)	430, 630, 1044, 1092
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	5 cut(s)	100, 228, 427, 960, 982
BsgI	GTGCAG	2 cut(s)	726, 989
BshFI	GGCC	2 cut(s)	803, 1061
BshNI	GGYRCC	4 cut(s)	490, 496, 628, 1277
BshTI	ACCGGT	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	6 cut(s)	312, 386, 419, 494, 538, 680
BslI	CCNNNNNNNGG	6 cut(s)	334, 410, 425, 544, 779, 899
BsmAI	GTCTC	4 cut(s)	80, 229, 464, 476
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	2 cut(s)	803, 1061
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	356, 842
Bsp143I	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
BspACI	CCGC	4 cut(s)	68, 342, 378, 754
BspANI	GGCC	2 cut(s)	803, 1061
BspCNI	CTCAG	2 cut(s)	258, 499
BspLI	GGNNCC	5 cut(s)	355, 492, 498, 630, 1279
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	1323
BspT107I	GGYRCC	4 cut(s)	490, 496, 628, 1277
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	3 cut(s)	385, 418, 493
BsrI	ACTGG	4 cut(s)	430, 630, 1044, 1092
BssAI	RCCGGY	3 cut(s)	385, 418, 493
BssECI	CCNNGG	3 cut(s)	536, 778, 1048
BssMI	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
BssNAI	GTATAC	1 cut(s)	565
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	778, 1048
Bst1107I	GTATAC	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	5 cut(s)	261, 294, 464, 704, 962
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	251, 715
BstDEI	CTNAG	3 cut(s)	245, 486, 1173
BstF5I	GGATG	4 cut(s)	58, 234, 528, 1108
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	3 cut(s)	99, 144, 255
BstKTI	GATC	6 cut(s)	175, 459, 808, 823, 1006, 1318
BstMAI	GTCTC	4 cut(s)	80, 229, 464, 476
BstMBI	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 874, 1259
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	846
BstPAI	GACNNNNGTC	1 cut(s)	960
BstSCI	CCNGG	3 cut(s)	144, 536, 678
BstSFI	CTRYAG	2 cut(s)	114, 958
BstSLI	GKGCMC	1 cut(s)	842
BstV1I	GCAGC	5 cut(s)	100, 228, 427, 960, 982
BstV2I	GAAGAC	3 cut(s)	66, 216, 314
BstX2I	RGATCY	2 cut(s)	456, 1315
BstXI	CCANNNNNNTGG	1 cut(s)	1099
BstYI	RGATCY	2 cut(s)	456, 1315
BstZ17I	GTATAC	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	803, 1061
BtgZI	GCGATG	2 cut(s)	161, 330
BtrI	CACGTC	1 cut(s)	1249
BtsCI	GGATG	4 cut(s)	58, 234, 528, 1108
BtsIMutI	CAGTG	2 cut(s)	921, 1099
Cac8I	GCNNGC	2 cut(s)	251, 715
CfoI	GCGC	3 cut(s)	99, 144, 255
Cfr10I	RCCGGY	3 cut(s)	385, 418, 493
Cfr13I	GGNCC	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	982, 1043, 1203
CspAI	ACCGGT	1 cut(s)	385
CviAII	CATG	2 cut(s)	436, 843
CviQI	GTAC	3 cut(s)	982, 1043, 1203
DdeI	CTNAG	3 cut(s)	245, 486, 1173
DpnI	GATC	6 cut(s)	174, 458, 807, 822, 1005, 1317
DpnII	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	2 cut(s)	83, 393
Eco130I	CCWWGG	2 cut(s)	778, 1048
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	229
Eco47III	AGCGCT	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	778, 1048
EcoT22I	ATGCAT	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	2 cut(s)	778, 1048
FaeI	CATG	2 cut(s)	439, 846
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	435, 842
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	114, 217, 416, 971, 974, 1323
FokI	GGATG	4 cut(s)	65, 221, 515, 1115
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	6 cut(s)	114, 217, 416, 971, 974, 1323
FspBI	CTAG	3 cut(s)	303, 1049, 1257
GlaI	GCGC	3 cut(s)	98, 143, 254
GluI	GCNGC	6 cut(s)	114, 217, 416, 971, 974, 1323
GsuI	CTGGAG	1 cut(s)	805
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	803, 1061
HapII	CCGG	6 cut(s)	312, 386, 419, 494, 538, 680
HhaI	GCGC	3 cut(s)	99, 144, 255
Hin1II	CATG	2 cut(s)	439, 846
Hin6I	GCGC	3 cut(s)	97, 142, 253
HinP1I	GCGC	3 cut(s)	97, 142, 253
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	6 cut(s)	312, 386, 419, 494, 538, 680
HphI	GGTGA	4 cut(s)	212, 434, 1013, 1025
Hpy166II	GTNNAC	5 cut(s)	553, 565, 623, 1045, 1246
Hpy188I	TCNGA	8 cut(s)	405, 452, 644, 676, 736, 898, 924, 1081
Hpy188III	TCNNGA	2 cut(s)	167, 505
Hpy8I	GTNNAC	5 cut(s)	553, 565, 623, 1045, 1246
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	169, 987, 1079, 1291
HpyCH4III	ACNGT	5 cut(s)	261, 294, 464, 704, 962
HpyCH4IV	ACGT	1 cut(s)	1248
HpyCH4V	TGCA	8 cut(s)	116, 439, 707, 713, 919, 970, 996, 1322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 874, 1259
HpyF3I	CTNAG	3 cut(s)	245, 486, 1173
HpySE526I	ACGT	1 cut(s)	1248
Hsp92II	CATG	2 cut(s)	439, 846
HspAI	GCGC	3 cut(s)	97, 142, 253
Ksp22I	TGATCA	1 cut(s)	1003
Kzo9I	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	5 cut(s)	100, 228, 427, 960, 982
LweI	GCATC	5 cut(s)	448, 504, 928, 954, 1260
MaeI	CTAG	3 cut(s)	303, 1049, 1257
MaeII	ACGT	1 cut(s)	1248
MaeIII	GTNAC	4 cut(s)	200, 298, 421, 656
MalI	GATC	6 cut(s)	174, 458, 807, 822, 1005, 1317
MboI	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	2 cut(s)	456, 1315
MhlI	GDGCHC	2 cut(s)	356, 842
MluCI	AATT	9 cut(s)	17, 125, 287, 360, 809, 824, 1030, 1136, 1294
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	3 cut(s)	428, 699, 913
MnlI	CCTC	8 cut(s)	200, 404, 541, 645, 904, 1101, 1209, 1306
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	5 cut(s)	26, 834, 986, 1161, 1333
MslI	CAYNNNNRTG	2 cut(s)	914, 1011
MspA1I	CMGCKG	2 cut(s)	767, 973
MspI	CCGG	6 cut(s)	312, 386, 419, 494, 538, 680
MspR9I	CCNGG	3 cut(s)	146, 538, 680
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	998
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	141, 874, 1259
NciI	CCSGG	2 cut(s)	538, 680
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
NlaIII	CATG	2 cut(s)	439, 846
NlaIV	GGNNCC	5 cut(s)	355, 492, 498, 630, 1279
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	846
PciI	ACATGT	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	385
PkrI	GCNGC	6 cut(s)	115, 218, 417, 972, 975, 1324
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	842
PshAI	GACNNNNGTC	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	355, 492, 498, 630, 1279
PspPI	GGNCC	1 cut(s)	801
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	456, 1315
PvuII	CAGCTG	2 cut(s)	767, 973
RsaI	GTAC	3 cut(s)	983, 1044, 1204
RsaNI	GTAC	3 cut(s)	982, 1043, 1203
RseI	CAYNNNNRTG	2 cut(s)	914, 1011
SaqAI	TTAA	5 cut(s)	26, 834, 986, 1161, 1333
SatI	GCNGC	6 cut(s)	114, 217, 416, 971, 974, 1323
Sau3AI	GATC	6 cut(s)	172, 456, 805, 820, 1003, 1315
Sau96I	GGNCC	1 cut(s)	801
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	3 cut(s)	146, 538, 680
SduI	GDGCHC	2 cut(s)	356, 842
SfaNI	GCATC	5 cut(s)	448, 504, 928, 954, 1260
SfcI	CTRYAG	2 cut(s)	114, 958
SmiMI	CAYNNNNRTG	2 cut(s)	914, 1011
Sse9I	AATT	9 cut(s)	17, 125, 287, 360, 809, 824, 1030, 1136, 1294
SsiI	CCGC	4 cut(s)	68, 342, 378, 754
SspI	AATATT	2 cut(s)	650, 1331
SspMI	CTAG	3 cut(s)	303, 1049, 1257
StyD4I	CCNGG	3 cut(s)	144, 536, 678
StyI	CCWWGG	2 cut(s)	778, 1048
TaaI	ACNGT	5 cut(s)	261, 294, 464, 704, 962
TaiI	ACGT	1 cut(s)	1251
TaqI	TCGA	3 cut(s)	693, 819, 964
TasI	AATT	9 cut(s)	17, 125, 287, 360, 809, 824, 1030, 1136, 1294
Tru1I	TTAA	5 cut(s)	26, 834, 986, 1161, 1333
Tru9I	TTAA	5 cut(s)	26, 834, 986, 1161, 1333
TscAI	CASTG	2 cut(s)	921, 1099
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	6 cut(s)	113, 216, 415, 970, 973, 1322
Tsp45I	GTSAC	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	921, 1099
XapI	RAATTY	4 cut(s)	17, 360, 1136, 1294
XceI	RCATGY	1 cut(s)	846
XcmI	CCANNNNNNNNNTGG	2 cut(s)	896, 1036
XmaJI	CCTAGG	1 cut(s)	1048
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	3 cut(s)	303, 1049, 1257
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.