RLG00000034212

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010590
Physical Location & Seq
Reverse (-)
38507956 .. 38509254
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034212

Sequence Viewer

Length: 1299 bp
ATGTCATATAGATCTAAATTTCTTATAAAGAGCAAAAGCAAGGGTGACAAGAATGTGGATGAAGAAGACAAGGTGGAAAAAGGAAGAAAAGAGATTATTCAGCGCTCTCTCTTGGTAGCTGCAGGGAAGCGATTGATGAGCACTCTGCGCCAGGAAAAGAAAGCCTTCATTCCAGACGATCATCGCTCTCTATACCTCTGCTTCGGTGAGTATGAAGAGGGCAGCAAGGTGTCCTACACCATTTTATCAGCCAGCTTGCACCAATTGTTTTCTAGTTGTTCTTCTCCACGACAATTACAGTTGGTTACTAGGTTTTCCGGCGAAGGTCTTCCCCGCTATATGGGTTGCGGCGTTTGGGGCTCCAAAATTCTCCTCGGGGGTGGTGCAAAACCAGCTTATTTGCATTGTCCGAGTCGAGGGCAGCCGGCTAGTGGGTGTTTTATACATCACGAGGTCAGAAAGATATATTGTTTTGAGACTACGGAGGAGACTCAGGTACCCATGCCACTCCCGAAAAAGAAGTTGAAAGGGAACATTCAACCCTTGCTAGTGGAGGTGAATGGCAAACTCTACGCTCTTGGTAAATCATTACCGTCTTTTGAAATGTTTGACGGCAATGATTGGTCTGAGTTGGCACCACCTCCACACGGAACTTATTTGTATTATCCCATTACACATTCAGACCCAGCTTGTCAGTTTGATGTATACTATGCAGTTGCTGGCACAAATATATTAGTTTCTGATGGTTGTTCAAGCTTCCGCTTTGACACAAGTGACCCCAAGCAAAGCTGGAGAAGACTAATATCAGCCGACCAATTCTCTTTCGACCCATTCTATTTTAAGGGCACAAGTGTAGTTGTGAATGATGGTAAACAGTTTGTGCTTTTCACATTCCAGCCCTCTGATGGTCAGCATATATCAGTGCATCTGATTTCATATGACTTTGATAGCATCACACAAGACTACAGTCGTGTGCAGCTGCCTCCATACTTGATGGAATATAAGGATGATCATCTTGGTGATCTTCTATTACCTAATTATCGGCTAGTACACCTAGGAGATAACGCTGTCTGCCTTCTTATGTCTAAACTCATCCCCAATGGAGTGGATGAGATGAAGAAGATGATTAGGTGTGTTGAATTCGCAGCATTCACATTCAAAGTCAGAGACAATGCTAGACTATCCTTAAAAATCAGATTCCTGCCTTATACCCCAAAGCTTATATATGATGATGACAATGATGATGATATGAACATGGCTTCGAGGGCTGGACAGATGCTTGGTGCCTTCTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

433

Amino Acids

48.94

Weight (kDa)

7.93

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 155 - 267 8.6e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 496, 634, 1283
AccI GTMKAC 1 cut(s) 705
AciI CCGC 3 cut(s) 334, 348, 760
AcsI RAATTY 3 cut(s) 17, 366, 1139
AfaI GTAC 2 cut(s) 498, 1050
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 5 cut(s) 340, 416, 431, 647, 905
AgsI TTSAA 6 cut(s) 526, 539, 602, 753, 1139, 1159
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 8 cut(s) 119, 255, 395, 689, 756, 789, 979, 1219
AluI AGCT 8 cut(s) 119, 255, 395, 689, 756, 789, 979, 1219
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 3 cut(s) 470, 482, 1161
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 374
Aor51HI AGCGCT 1 cut(s) 104
ApeKI GCWGC 6 cut(s) 119, 222, 421, 976, 979, 1145
ApoI RAATTY 3 cut(s) 17, 366, 1139
Asp700I GAANNNNTTC 2 cut(s) 164, 327
Asp718I GGTACC 1 cut(s) 496
AspA2I CCTAGG 1 cut(s) 1054
AspLEI GCGC 2 cut(s) 105, 150
AsuHPI GGTGA 4 cut(s) 56, 218, 568, 1031
AvaI CYCGRG 1 cut(s) 374
AvrII CCTAGG 1 cut(s) 1054
BaeGI GKGCMC 1 cut(s) 848
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BanI GGYRCC 3 cut(s) 496, 634, 1283
BanII GRGCYC 1 cut(s) 362
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 3 cut(s) 72, 320, 802
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 6 cut(s) 106, 234, 433, 966, 988, 1157
BccI CCATC 4 cut(s) 737, 860, 899, 988
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 3 cut(s) 470, 482, 1161
BfaI CTAG 7 cut(s) 273, 309, 429, 548, 1046, 1055, 1176
BfmI CTRYAG 2 cut(s) 120, 964
BfoI RGCGCY 1 cut(s) 106
BglII AGATCT 1 cut(s) 11
BisI GCNGC 7 cut(s) 120, 223, 349, 422, 977, 980, 1146
BlnI CCTAGG 1 cut(s) 1054
BlsI GCNGC 7 cut(s) 121, 224, 350, 423, 978, 981, 1147
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 4 cut(s) 361, 498, 636, 1285
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 3 cut(s) 934, 960, 1266
BoxI GACNNNNGTC 1 cut(s) 966
BpiI GAAGAC 3 cut(s) 72, 320, 802
BpmI CTGGAG 1 cut(s) 811
BsaBI GATNNNNATC 1 cut(s) 1011
BsaJI CCNNGG 2 cut(s) 373, 1054
Bsc4I CCNNNNNNNGG 5 cut(s) 340, 416, 431, 647, 905
Bse118I RCCGGY 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 1011
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 373, 1054
BseGI GGATG 4 cut(s) 64, 1012, 1092, 1114
BseJI GATNNNNATC 1 cut(s) 1011
BseLI CCNNNNNNNGG 5 cut(s) 340, 416, 431, 647, 905
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 506, 618
BseRI GAGGAG 2 cut(s) 362, 500
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 6 cut(s) 106, 234, 433, 966, 988, 1157
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 995
BshNI GGYRCC 3 cut(s) 496, 634, 1283
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 318, 425
BslI CCNNNNNNNGG 5 cut(s) 340, 416, 431, 647, 905
BsmAI GTCTC 3 cut(s) 470, 482, 1161
BsmI GAATGC 1 cut(s) 1148
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 143, 362, 848
Bsp143I GATC 4 cut(s) 11, 178, 1009, 1021
BspACI CCGC 3 cut(s) 334, 348, 760
BspCNI CTCAG 2 cut(s) 505, 619
BspLI GGNNCC 4 cut(s) 361, 498, 636, 1285
BspMAI CTGCAG 1 cut(s) 124
BspT107I GGYRCC 3 cut(s) 496, 634, 1283
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 373, 1054
BssMI GATC 4 cut(s) 11, 178, 1009, 1021
BssNAI GTATAC 1 cut(s) 706
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 1054
Bst1107I GTATAC 1 cut(s) 706
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 300, 594, 876, 968
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 4 cut(s) 253, 257, 426, 721
BstDEI CTNAG 2 cut(s) 492, 627
BstF5I GGATG 4 cut(s) 64, 1012, 1092, 1114
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 105, 150
BstKTI GATC 4 cut(s) 14, 181, 1012, 1024
BstMAI GTCTC 3 cut(s) 470, 482, 1161
BstMBI GATC 4 cut(s) 11, 178, 1009, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 147, 357, 392, 1265
BstNI CCWGG 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 966
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 2 cut(s) 120, 964
BstSLI GKGCMC 1 cut(s) 848
BstV1I GCAGC 6 cut(s) 106, 234, 433, 966, 988, 1157
BstV2I GAAGAC 3 cut(s) 72, 320, 802
BstX2I RGATCY 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 706
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 4 cut(s) 64, 1012, 1092, 1114
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 4 cut(s) 253, 257, 426, 721
CaiI CAGNNNCTG 1 cut(s) 719
CfoI GCGC 2 cut(s) 105, 150
Cfr10I RCCGGY 1 cut(s) 424
Csp6I GTAC 2 cut(s) 497, 1049
CviAII CATG 2 cut(s) 502, 1255
CviQI GTAC 2 cut(s) 497, 1049
DdeI CTNAG 2 cut(s) 492, 627
DpnI GATC 4 cut(s) 13, 180, 1011, 1023
DpnII GATC 4 cut(s) 11, 178, 1009, 1021
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 1054
Eco24I GRGCYC 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 1054
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 1054
FaeI CATG 2 cut(s) 505, 1258
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 2 cut(s) 501, 1254
FauI CCCGC 1 cut(s) 341
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 1009
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 7 cut(s) 120, 223, 349, 422, 977, 980, 1146
FokI GGATG 4 cut(s) 71, 1019, 1079, 1121
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 7 cut(s) 120, 223, 349, 422, 977, 980, 1146
FspBI CTAG 7 cut(s) 273, 309, 429, 548, 1046, 1055, 1176
GlaI GCGC 2 cut(s) 104, 149
GluI GCNGC 7 cut(s) 120, 223, 349, 422, 977, 980, 1146
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 811
HaeII RGCGCY 1 cut(s) 106
HapII CCGG 2 cut(s) 318, 425
HhaI GCGC 2 cut(s) 105, 150
Hin1II CATG 2 cut(s) 505, 1258
Hin6I GCGC 2 cut(s) 103, 148
HinP1I GCGC 2 cut(s) 103, 148
HindIII AAGCTT 2 cut(s) 754, 1217
HinfI GANTC 3 cut(s) 412, 490, 1197
HpaII CCGG 2 cut(s) 318, 425
HphI GGTGA 4 cut(s) 56, 218, 568, 1031
Hpy166II GTNNAC 3 cut(s) 706, 872, 1051
Hpy188I TCNGA 9 cut(s) 411, 458, 628, 682, 742, 904, 930, 1166, 1196
Hpy188III TCNNGA 3 cut(s) 173, 449, 511
Hpy8I GTNNAC 3 cut(s) 706, 872, 1051
HpyAV CCTTC 4 cut(s) 175, 317, 1085, 1297
HpyCH4III ACNGT 4 cut(s) 300, 594, 876, 968
HpyCH4V TGCA 7 cut(s) 122, 259, 386, 403, 713, 925, 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 357, 392, 1265
HpyF3I CTNAG 2 cut(s) 492, 627
Hsp92II CATG 2 cut(s) 505, 1258
HspAI GCGC 2 cut(s) 103, 148
KpnI GGTACC 1 cut(s) 500
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 4 cut(s) 11, 178, 1009, 1021
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 6 cut(s) 106, 234, 433, 966, 988, 1157
LweI GCATC 3 cut(s) 934, 960, 1266
MaeI CTAG 7 cut(s) 273, 309, 429, 548, 1046, 1055, 1176
MaeIII GTNAC 3 cut(s) 44, 304, 773
MalI GATC 4 cut(s) 13, 180, 1011, 1023
MboI GATC 4 cut(s) 11, 178, 1009, 1021
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 143, 362, 848
MluCI AATT 7 cut(s) 17, 263, 293, 366, 815, 1036, 1139
MlyI GAGTC 2 cut(s) 421, 484
MroNI GCCGGC 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 164, 327
MseI TTAA 2 cut(s) 840, 1187
MslI CAYNNNNRTG 1 cut(s) 1017
MspA1I CMGCKG 1 cut(s) 979
MspI CCGG 2 cut(s) 318, 425
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 1148
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 147, 357, 392, 1265
NaeI GCCGGC 1 cut(s) 426
NdeI CATATG 1 cut(s) 937
NdeII GATC 4 cut(s) 11, 178, 1009, 1021
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 2 cut(s) 505, 1258
NlaIV GGNNCC 4 cut(s) 361, 498, 636, 1285
NmuCI GTSAC 2 cut(s) 44, 773
PctI GAATGC 1 cut(s) 1148
PdiI GCCGGC 1 cut(s) 426
PdmI GAANNNNTTC 2 cut(s) 164, 327
PfeI GAWTC 1 cut(s) 1197
PkrI GCNGC 7 cut(s) 121, 224, 350, 423, 978, 981, 1147
PleI GAGTC 2 cut(s) 420, 484
PpsI GAGTC 2 cut(s) 420, 484
PshAI GACNNNNGTC 1 cut(s) 966
PsiI TTATAA 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 4 cut(s) 361, 498, 636, 1285
PstI CTGCAG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 2 cut(s) 498, 1050
RsaNI GTAC 2 cut(s) 497, 1049
RseI CAYNNNNRTG 1 cut(s) 1017
SaqAI TTAA 2 cut(s) 840, 1187
SatI GCNGC 7 cut(s) 120, 223, 349, 422, 977, 980, 1146
Sau3AI GATC 4 cut(s) 11, 178, 1009, 1021
SchI GAGTC 2 cut(s) 421, 484
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 3 cut(s) 143, 362, 848
SfaNI GCATC 3 cut(s) 934, 960, 1266
SfcI CTRYAG 2 cut(s) 120, 964
SmiMI CAYNNNNRTG 1 cut(s) 1017
Sse9I AATT 7 cut(s) 17, 263, 293, 366, 815, 1036, 1139
SsiI CCGC 3 cut(s) 334, 348, 760
SspMI CTAG 7 cut(s) 273, 309, 429, 548, 1046, 1055, 1176
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 1054
TaaI ACNGT 4 cut(s) 300, 594, 876, 968
TaqI TCGA 3 cut(s) 415, 825, 1262
TasI AATT 7 cut(s) 17, 263, 293, 366, 815, 1036, 1139
TatI WGTACW 1 cut(s) 1048
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 1197
Tru1I TTAA 2 cut(s) 840, 1187
Tru9I TTAA 2 cut(s) 840, 1187
TscAI CASTG 1 cut(s) 927
TseFI GTSAC 2 cut(s) 44, 773
TseI GCWGC 6 cut(s) 119, 222, 421, 976, 979, 1145
Tsp45I GTSAC 2 cut(s) 44, 773
TspDTI ATGAA 6 cut(s) 75, 157, 228, 924, 1130, 1265
TspGWI ACGGA 2 cut(s) 497, 663
TspRI CASTG 1 cut(s) 927
XapI RAATTY 3 cut(s) 17, 366, 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XmaJI CCTAGG 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 705
XmnI GAANNNNTTC 2 cut(s) 164, 327
XspI CTAG 7 cut(s) 273, 309, 429, 548, 1046, 1055, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.