Rh5DG308700

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010590
Physical Location & Seq
Reverse (-)
39445581 .. 39456924
11344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG308700.1

Sequence Viewer

Length: 1344 bp
ATGTCATATAGATCTAAATTCCTGATAAAGAGCAAAAGCAAGGGTGACAAGAATGTGGATGAAGAAGACAAGGTGGAAAAAGGAAGAAAAGAGATTATTCAGCGCTCTCTCTTGGTAGCTGCAGGGAAGCGATTGATGAGCACTCTATGCCAGGAAAAGAAAGCCTTCATTCCCGACGATCATCGCTCTCTATACCTCTGCTTCGGTGAGTACGAAGAGGGCAGCAAGGTGTCCTACACCATTTTATCAGCCAGCTTGCACCAATTGTTTTATGCTTGTTCTTCTCCACGGCAATTACAGCTAGTTACTAGGTTTTCCGGCGAAGGTCTTCCCCGCTATGTGGGTTGCGGCCTTTGGGGCTCCAAAATTCTCCTCGGGGGTGGCGCAAAACCAGCTTATTTGCATTGTCCGAGTCGAGGCCAGCCTGCTAGTGGGTGTTTTATACATCACGAGGTCAGAAAGATATACTGTTTTGAGACTACGGAGGAGACTCAGGTACCCATGCCACTCCCGAAGAAGATGTTGAAAGGGAACATTCAACCCTTGCTAGTGGAGGTGAACGGCAAACTCTACGCTCTTGGTAAATCATTACCGTCTTTTGAAATGTTTGACGGCAATGATTGGTCTGAGTTGGCACCACCTCCACACGGAACTTATTTGTGTTATCCCTTTACACATTCAGACCCAGCTTGTCAGTTCGATGTATACTATGCAGTTGCCGGCACAAATATATTAGTTTCTGATGGTGGTTCAAGCTTCCGCTTTGACACAAGTGACCCCAAGCAAGGCTGGAGAAGACTAATATCAGCCGACCAATTCTCTTTCGACCCATTCTGTTTTAAGGGCACAAGTGTAGTTGTGAATGATGGTAAACAGTTTGTGCTTTTCACATTCCAGCCCTCTGATGGTCAGCATATATCAGTGCATCTGATTGCATATGACTTTGATAGCATCACACAAGACTACAGTCGTGTGCCGCTGGCTCCATACTTGATGGAATACAAGGATGATCGTCTTGGTGATCTTCCATTACCTAATTATCGGCTAGTACACATAGGAGATAACGCTGTCTGCCTTCTTATGTCTAAACTCCTCCCCAATGGAGTGGATGAGAGGAAGAAGAAGATGATTAGGTGTGTTGAATTCGCAGCATTCACATTCAAAGTCAGAGACAATACTAGACTATCCTTAAAAATCAGATTCCTGCCTCATACCTCAAAGCTCATATATGATGATGACAATGATGATGATATGGACATGGCTTCTAGGACTGGACAGATGCTTGGTGCCTTCTTGTTGGAAAATTCTCAAGTGAACAAGGAGGACCTTGCAGCAGAATATTAG

Protein Analysis

447

Amino Acids

50.47

Weight (kDa)

6.83

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 155 - 361 1.4e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 496, 634, 1286
AccI GTMKAC 1 cut(s) 705
AciI CCGC 4 cut(s) 334, 348, 760, 977
AcsI RAATTY 4 cut(s) 17, 366, 1142, 1303
AfaI GTAC 3 cut(s) 212, 498, 1050
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 6 cut(s) 340, 416, 431, 647, 785, 905
AgsI TTSAA 6 cut(s) 526, 539, 602, 753, 1142, 1162
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 7 cut(s) 119, 255, 301, 395, 689, 756, 1222
AluI AGCT 7 cut(s) 119, 255, 301, 395, 689, 756, 1222
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 3 cut(s) 470, 482, 1164
Ama87I CYCGRG 1 cut(s) 374
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 2 cut(s) 349, 418
ApeKI GCWGC 4 cut(s) 119, 222, 1148, 1331
ApoI RAATTY 4 cut(s) 17, 366, 1142, 1303
Asp700I GAANNNNTTC 2 cut(s) 164, 327
Asp718I GGTACC 1 cut(s) 496
AspLEI GCGC 2 cut(s) 105, 386
AspS9I GGNCC 1 cut(s) 1324
AsuHPI GGTGA 4 cut(s) 56, 218, 568, 1031
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 1324
BaeGI GKGCMC 1 cut(s) 848
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BanI GGYRCC 3 cut(s) 496, 634, 1286
BanII GRGCYC 1 cut(s) 362
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 3 cut(s) 72, 320, 802
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 106, 234, 1160
BccI CCATC 4 cut(s) 737, 860, 899, 988
BceAI ACGGC 3 cut(s) 305, 577, 628
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 470, 482, 1164
BfaI CTAG 7 cut(s) 302, 309, 429, 548, 1046, 1179, 1266
BfmI CTRYAG 2 cut(s) 120, 964
BfoI RGCGCY 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 357
BglII AGATCT 1 cut(s) 11
BisI GCNGC 6 cut(s) 120, 223, 349, 977, 1149, 1332
BlsI GCNGC 6 cut(s) 121, 224, 350, 978, 1150, 1333
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 1324
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 1324
BmiI GGNNCC 5 cut(s) 361, 498, 636, 984, 1288
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 3 cut(s) 934, 960, 1269
BoxI GACNNNNGTC 1 cut(s) 966
BpiI GAAGAC 3 cut(s) 72, 320, 802
BpmI CTGGAG 1 cut(s) 811
BpuEI CTTGAG 1 cut(s) 1293
BsaJI CCNNGG 2 cut(s) 287, 373
Bsc4I CCNNNNNNNGG 6 cut(s) 340, 416, 431, 647, 785, 905
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 1276
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 287, 373
BseGI GGATG 3 cut(s) 64, 1012, 1114
BseLI CCNNNNNNNGG 6 cut(s) 340, 416, 431, 647, 785, 905
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 506, 618
BseNI ACTGG 1 cut(s) 1276
BseRI GAGGAG 3 cut(s) 362, 500, 1082
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 3 cut(s) 106, 234, 1160
BseYI CCCAGC 1 cut(s) 685
BshFI GGCC 2 cut(s) 351, 420
BshNI GGYRCC 3 cut(s) 496, 634, 1286
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 318, 720
BslI CCNNNNNNNGG 6 cut(s) 340, 416, 431, 647, 785, 905
BsmAI GTCTC 3 cut(s) 470, 482, 1164
BsmI GAATGC 1 cut(s) 1151
BsnI GGCC 2 cut(s) 351, 420
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 143, 362, 848
Bsp143I GATC 4 cut(s) 11, 178, 1009, 1021
BspACI CCGC 4 cut(s) 334, 348, 760, 977
BspANI GGCC 2 cut(s) 351, 420
BspCNI CTCAG 2 cut(s) 505, 619
BspLI GGNNCC 5 cut(s) 361, 498, 636, 984, 1288
BspMAI CTGCAG 1 cut(s) 124
BspT107I GGYRCC 3 cut(s) 496, 634, 1286
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 1 cut(s) 1276
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 2 cut(s) 287, 373
BssMI GATC 4 cut(s) 11, 178, 1009, 1021
BssNAI GTATAC 1 cut(s) 706
BssSI CACGAG 1 cut(s) 449
Bst1107I GTATAC 1 cut(s) 706
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 470, 594, 876, 968
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 6 cut(s) 253, 257, 422, 426, 721, 981
BstDEI CTNAG 2 cut(s) 492, 627
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 64, 1012, 1114
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 105, 386
BstKTI GATC 4 cut(s) 14, 181, 1012, 1024
BstMAI GTCTC 3 cut(s) 470, 482, 1164
BstMBI GATC 4 cut(s) 11, 178, 1009, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 147, 298, 357, 392
BstNI CCWGG 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 966
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 2 cut(s) 120, 964
BstSLI GKGCMC 1 cut(s) 848
BstV1I GCAGC 3 cut(s) 106, 234, 1160
BstV2I GAAGAC 3 cut(s) 72, 320, 802
BstX2I RGATCY 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 351, 420
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 64, 1012, 1114
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 6 cut(s) 253, 257, 422, 426, 721, 981
CfoI GCGC 2 cut(s) 105, 386
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 1324
Csp6I GTAC 3 cut(s) 211, 497, 1049
CviAII CATG 2 cut(s) 502, 1258
CviQI GTAC 3 cut(s) 211, 497, 1049
DdeI CTNAG 2 cut(s) 492, 627
DpnI GATC 4 cut(s) 13, 180, 1011, 1023
DpnII GATC 4 cut(s) 11, 178, 1009, 1021
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 1324
Eco47III AGCGCT 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 1324
EcoRI GAATTC 1 cut(s) 1142
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 362
FaeI CATG 2 cut(s) 505, 1261
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 2 cut(s) 501, 1257
FauI CCCGC 1 cut(s) 341
FauNDI CATATG 1 cut(s) 937
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 6 cut(s) 120, 223, 349, 977, 1149, 1332
FokI GGATG 3 cut(s) 71, 1019, 1121
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 6 cut(s) 120, 223, 349, 977, 1149, 1332
FspBI CTAG 7 cut(s) 302, 309, 429, 548, 1046, 1179, 1266
GlaI GCGC 2 cut(s) 104, 385
GluI GCNGC 6 cut(s) 120, 223, 349, 977, 1149, 1332
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 811
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 2 cut(s) 351, 420
HapII CCGG 2 cut(s) 318, 720
HhaI GCGC 2 cut(s) 105, 386
Hin1II CATG 2 cut(s) 505, 1261
Hin6I GCGC 2 cut(s) 103, 384
HinP1I GCGC 2 cut(s) 103, 384
HindIII AAGCTT 1 cut(s) 754
HinfI GANTC 3 cut(s) 412, 490, 1200
HpaII CCGG 2 cut(s) 318, 720
HphI GGTGA 4 cut(s) 56, 218, 568, 1031
Hpy166II GTNNAC 5 cut(s) 559, 706, 872, 1051, 1315
Hpy188I TCNGA 9 cut(s) 411, 458, 628, 682, 742, 904, 930, 1169, 1199
Hpy188III TCNNGA 4 cut(s) 22, 173, 449, 511
Hpy8I GTNNAC 5 cut(s) 559, 706, 872, 1051, 1315
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 175, 317, 1085, 1300
HpyCH4III ACNGT 4 cut(s) 470, 594, 876, 968
HpyCH4V TGCA 7 cut(s) 122, 259, 403, 713, 925, 935, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 298, 357, 392
HpyF3I CTNAG 2 cut(s) 492, 627
Hsp92II CATG 2 cut(s) 505, 1261
HspAI GCGC 2 cut(s) 103, 384
KpnI GGTACC 1 cut(s) 500
KroI GCCGGC 1 cut(s) 719
KroNI GCCGGC 1 cut(s) 721
Kzo9I GATC 4 cut(s) 11, 178, 1009, 1021
LmnI GCTCC 2 cut(s) 365, 988
Lsp1109I GCAGC 3 cut(s) 106, 234, 1160
LweI GCATC 3 cut(s) 934, 960, 1269
MaeI CTAG 7 cut(s) 302, 309, 429, 548, 1046, 1179, 1266
MaeIII GTNAC 3 cut(s) 44, 304, 773
MalI GATC 4 cut(s) 13, 180, 1011, 1023
MboI GATC 4 cut(s) 11, 178, 1009, 1021
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 143, 362, 848
MluCI AATT 8 cut(s) 17, 263, 293, 366, 815, 1036, 1142, 1303
MlyI GAGTC 2 cut(s) 421, 484
MmeI TCCRAC 1 cut(s) 1278
MroNI GCCGGC 1 cut(s) 719
MroXI GAANNNNTTC 2 cut(s) 164, 327
MseI TTAA 2 cut(s) 840, 1190
MspA1I CMGCKG 1 cut(s) 979
MspI CCGG 2 cut(s) 318, 720
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 1151
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 147, 298, 357, 392
NaeI GCCGGC 1 cut(s) 721
NdeI CATATG 1 cut(s) 937
NdeII GATC 4 cut(s) 11, 178, 1009, 1021
NgoMIV GCCGGC 1 cut(s) 719
NlaIII CATG 2 cut(s) 505, 1261
NlaIV GGNNCC 5 cut(s) 361, 498, 636, 984, 1288
NmuCI GTSAC 2 cut(s) 44, 773
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 1151
PdiI GCCGGC 1 cut(s) 721
PdmI GAANNNNTTC 2 cut(s) 164, 327
PfeI GAWTC 1 cut(s) 1200
PkrI GCNGC 6 cut(s) 121, 224, 350, 978, 1150, 1333
PleI GAGTC 2 cut(s) 420, 484
PpsI GAGTC 2 cut(s) 420, 484
PpuMI RGGWCCY 1 cut(s) 1324
PshAI GACNNNNGTC 1 cut(s) 966
Psp5II RGGWCCY 1 cut(s) 1324
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 5 cut(s) 361, 498, 636, 984, 1288
PspPI GGNCC 1 cut(s) 1324
PspPPI RGGWCCY 1 cut(s) 1324
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 3 cut(s) 212, 498, 1050
RsaNI GTAC 3 cut(s) 211, 497, 1049
SaqAI TTAA 2 cut(s) 840, 1190
SatI GCNGC 6 cut(s) 120, 223, 349, 977, 1149, 1332
Sau3AI GATC 4 cut(s) 11, 178, 1009, 1021
Sau96I GGNCC 1 cut(s) 1324
SchI GAGTC 2 cut(s) 421, 484
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 3 cut(s) 143, 362, 848
SfaNI GCATC 3 cut(s) 934, 960, 1269
SfcI CTRYAG 2 cut(s) 120, 964
SinI GGWCC 1 cut(s) 1324
SmlI CTYRAG 1 cut(s) 1308
SmoI CTYRAG 1 cut(s) 1308
Sse9I AATT 8 cut(s) 17, 263, 293, 366, 815, 1036, 1142, 1303
SsiI CCGC 4 cut(s) 334, 348, 760, 977
SspI AATATT 1 cut(s) 1340
SspMI CTAG 7 cut(s) 302, 309, 429, 548, 1046, 1179, 1266
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 470, 594, 876, 968
TaqI TCGA 3 cut(s) 415, 699, 825
TasI AATT 8 cut(s) 17, 263, 293, 366, 815, 1036, 1142, 1303
TatI WGTACW 1 cut(s) 1048
TauI GCSGC 2 cut(s) 351, 979
TfiI GAWTC 1 cut(s) 1200
Tru1I TTAA 2 cut(s) 840, 1190
Tru9I TTAA 2 cut(s) 840, 1190
TscAI CASTG 1 cut(s) 927
TseFI GTSAC 2 cut(s) 44, 773
TseI GCWGC 4 cut(s) 119, 222, 1148, 1331
Tsp45I GTSAC 2 cut(s) 44, 773
TspDTI ATGAA 2 cut(s) 75, 157
TspGWI ACGGA 2 cut(s) 497, 663
TspRI CASTG 1 cut(s) 927
VpaK11BI GGWCC 1 cut(s) 1324
XapI RAATTY 4 cut(s) 17, 366, 1142, 1303
XcmI CCANNNNNNNNNTGG 2 cut(s) 428, 902
XmiI GTMKAC 1 cut(s) 705
XmnI GAANNNNTTC 2 cut(s) 164, 327
XspI CTAG 7 cut(s) 302, 309, 429, 548, 1046, 1179, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.