Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010590

Physical Location & Seq

Genomic Coordinates Reverse (-)

38581041 .. 38582327

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTCGTATAGATCTAAATTCTCTTTAAAGAGCAAGAGTAAGAATGTGGATGAAGAAGACAAGGCGGAAAAAGGAAGAACAGAGACTATATGGTGCTCTCTCTTGGTGGCTGTAAGGAAGCGATTGATGAGTACTCTGAGCCAGGAAAAGAAGGCCTTCATTCCTGACGATGATCGCTCTCTGTACCTTTGCTTCGGTGACTATGAAGAGGGCAGCAAGGTCTCCTACATCATTCTATCACTCAGCTTGCAGCAACTGTTTTCTGCTTCATCTTCTCCACGGAAATTACAACTGGTTACTAGGTTATCCGGCGATGGTCTTCCCCGTTATATGGGTTGCGGCGTTTGGGGCTCCAAAATTCTCTTCGGGGGTGGCGCAAAACCGGGTTATTTGCATCATCCGGCACGAGGGCACCCGGTTACTGGGTGTTTCATGCATCACCAAGTCAGAAAGATCTACTATTTTGAGACTATGGAAGAGACTCAGGTGCCGGTGCCACTCCCAAAGAAGATGCTGAATGGGAACATCCAGCCCCGGCTGGTGGAGGTGGACAACAAAGTATACGCTATTGGTAAATCATTATCCTCCTTTGAGATGTTTGATGGCAATGATTGGTGTGAACTGGCACCACCTCTAATCAGAAAATATTTCTGTTATCCCTTTACACACTCTGACCCGGCTTGTCAGTTCGATTTATACTATGCAGTTGCAGGCACAAATATATTGGTTTCTGATGGTGGTTCAAGCTTCCGCTTTGACACAGCTGACCCCAACCAAGGCTGGAGAAAGCTAATGTGTGCCGATCAATTCTCTTTCGATCAATTCTGTTTGAAGGGCACATGTTTAGTTGTGAATGACGGTAAACAATTTGTGTTTTTCACATTCCAACCTTCCGATGGTCAGCACATATCAGTGCATCTGATTTCATATGACTTCAATAGCATCACACGAGACTACAGTCAAGTGCAGCTGCCTTCGTACTTAATGCAATGCAAGGGTGACCGTCTTGGTGATTTTTCATTACCTAATTATTGGCTGGTACACCTAGGAGATAACATCGTTTGCCTTCTTATGTCTGAACTTCGCCCCAGTGGATTGGATGAGAGGAGGAAGAAGATGATTAGGTCTGTTGAATTCGCCACTTTCACATTCAAAGTCAAAGACAATGCTAAGTCCTTGAAAATCAGATTTCTACCTCGTACCCCAAAGTTCATATATGATGATGACGATGATGATATGGACGTGGCTTCTAGGGCTGGACAGATGCTTGGTGCCTTCTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

48.73

Weight (kDa)

8.32

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04500
rosa_chinensis	RchiOBHm_Chr5g0043731 RchiOBHm_Chr5g0043771
rosa_laevigata	RLG00000034212 RLG00000034214 RLG00000034215
rosa_multiflora	Rmu_sc0002448.1_g000008 Rmu_sc0008441.1_g000004 Rmu_sc0008441.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037290
rosa_rugosa	Rorug05G0208200 Rorug05G0208300
rosa_samantha	Rh5BG299500 Rh5BG299800 Rh5BG299900 Rh5BG300300 Rh5DG308500 Rh5DG308700 Rh5DG308800 Rh5DG309200 Rh5DG309300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	411, 487, 493, 625, 1271
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	3 cut(s)	65, 339, 751
AcsI	RAATTY	3 cut(s)	17, 357, 1133
AfaI	GTAC	5 cut(s)	133, 185, 980, 1041, 1201
AfiI	CCNNNNNNNGG	6 cut(s)	331, 407, 422, 541, 776, 896
AflIII	ACRYGT	1 cut(s)	839
AgsI	TTSAA	6 cut(s)	744, 832, 937, 1133, 1153, 1180
AjiI	CACGTC	1 cut(s)	1243
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	5 cut(s)	246, 747, 764, 790, 970
AluI	AGCT	5 cut(s)	246, 747, 764, 790, 970
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	5 cut(s)	77, 226, 461, 473, 945
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	213, 250, 967, 970
ApoI	RAATTY	3 cut(s)	17, 357, 1133
Asp700I	GAANNNNTTC	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	1045
AspLEI	GCGC	1 cut(s)	377
AsuC2I	CCSGG	4 cut(s)	384, 416, 535, 677
AsuHPI	GGTGA	4 cut(s)	209, 431, 1010, 1022
AvrII	CCTAGG	1 cut(s)	1045
BaeGI	GKGCMC	2 cut(s)	414, 839
BanI	GGYRCC	5 cut(s)	411, 487, 493, 625, 1271
BanII	GRGCYC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BauI	CACGAG	2 cut(s)	405, 948
BbsI	GAAGAC	2 cut(s)	63, 311
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	4 cut(s)	225, 262, 957, 979
BccI	CCATC	4 cut(s)	308, 596, 728, 890
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	4 cut(s)	384, 416, 535, 677
BcoDI	GTCTC	5 cut(s)	77, 226, 461, 473, 945
BfaI	CTAG	3 cut(s)	300, 1046, 1251
BfmI	CTRYAG	1 cut(s)	955
BglII	AGATCT	2 cut(s)	11, 453
BisI	GCNGC	5 cut(s)	214, 251, 340, 968, 971
BlnI	CCTAGG	1 cut(s)	1045
BlsI	GCNGC	5 cut(s)	215, 252, 341, 969, 972
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	5 cut(s)	143, 384, 416, 535, 677
BmgBI	CACGTC	1 cut(s)	1243
BmiI	GGNNCC	6 cut(s)	352, 413, 489, 495, 627, 1273
BmrFI	CCNGG	5 cut(s)	143, 384, 416, 535, 677
BmrI	ACTGGG	2 cut(s)	432, 1083
BmsI	GCATC	6 cut(s)	403, 445, 501, 925, 951, 1254
BmuI	ACTGGG	2 cut(s)	432, 1083
BoxI	GACNNNNGTC	1 cut(s)	957
BpiI	GAAGAC	2 cut(s)	63, 311
BpmI	CTGGAG	1 cut(s)	802
BpuMI	CCSGG	4 cut(s)	384, 416, 535, 677
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	4 cut(s)	278, 533, 775, 1045
Bsc4I	CCNNNNNNNGG	6 cut(s)	331, 407, 422, 541, 776, 896
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	4 cut(s)	297, 427, 627, 1089
Bse3DI	GCAATG	2 cut(s)	613, 995
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	278, 533, 775, 1045
BseGI	GGATG	4 cut(s)	55, 397, 525, 1105
BseLI	CCNNNNNNNGG	6 cut(s)	331, 407, 422, 541, 776, 896
BseMI	GCAATG	2 cut(s)	613, 995
BseMII	CTCAG	3 cut(s)	128, 256, 497
BseNI	ACTGG	4 cut(s)	297, 427, 627, 1089
BseRI	GAGGAG	1 cut(s)	1120
BseSI	GKGCMC	2 cut(s)	414, 839
BseXI	GCAGC	4 cut(s)	225, 262, 957, 979
BsgI	GTGCAG	1 cut(s)	986
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	5 cut(s)	411, 487, 493, 625, 1271
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	7 cut(s)	309, 383, 401, 416, 491, 535, 677
BslI	CCNNNNNNNGG	6 cut(s)	331, 407, 422, 541, 776, 896
BsmAI	GTCTC	5 cut(s)	77, 226, 461, 473, 945
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	4 cut(s)	98, 353, 414, 839
Bsp143I	GATC	5 cut(s)	11, 172, 453, 802, 817
BspACI	CCGC	3 cut(s)	65, 339, 751
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	129, 255, 496
BspLI	GGNNCC	6 cut(s)	352, 413, 489, 495, 627, 1273
BspT107I	GGYRCC	5 cut(s)	411, 487, 493, 625, 1271
BspTNI	GGTCTC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	613, 995
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	4 cut(s)	297, 427, 627, 1089
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	4 cut(s)	278, 533, 775, 1045
BssMI	GATC	5 cut(s)	11, 172, 453, 802, 817
BssNAI	GTATAC	1 cut(s)	562
BssSI	CACGAG	2 cut(s)	405, 948
BssT1I	CCWWGG	2 cut(s)	775, 1045
Bst1107I	GTATAC	1 cut(s)	562
Bst2BI	CACGAG	2 cut(s)	405, 948
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	4 cut(s)	258, 860, 959, 1004
Bst6I	CTCTTC	3 cut(s)	201, 368, 471
BstC8I	GCNNGC	2 cut(s)	248, 712
BstDEI	CTNAG	4 cut(s)	137, 242, 483, 1170
BstDSI	CCRYGG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	998
BstF5I	GGATG	4 cut(s)	55, 397, 525, 1105
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	5 cut(s)	14, 175, 456, 805, 820
BstMAI	GTCTC	5 cut(s)	77, 226, 461, 473, 945
BstMBI	GATC	5 cut(s)	11, 172, 453, 802, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 1253
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	843
BstPAI	GACNNNNGTC	1 cut(s)	957
BstPI	GGTNACC	1 cut(s)	998
BstSCI	CCNGG	5 cut(s)	141, 382, 414, 533, 675
BstSFI	CTRYAG	1 cut(s)	955
BstSLI	GKGCMC	2 cut(s)	414, 839
BstV1I	GCAGC	4 cut(s)	225, 262, 957, 979
BstV2I	GAAGAC	2 cut(s)	63, 311
BstX2I	RGATCY	2 cut(s)	11, 453
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BstYI	RGATCY	2 cut(s)	11, 453
BstZ17I	GTATAC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	1243
BtsCI	GGATG	4 cut(s)	55, 397, 525, 1105
BtsIMutI	CAGTG	2 cut(s)	918, 1096
Cac8I	GCNNGC	2 cut(s)	248, 712
CaiI	CAGNNNCTG	1 cut(s)	256
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	490
Csp6I	GTAC	5 cut(s)	132, 184, 979, 1040, 1200
CviAII	CATG	2 cut(s)	433, 840
CviQI	GTAC	5 cut(s)	132, 184, 979, 1040, 1200
DdeI	CTNAG	4 cut(s)	137, 242, 483, 1170
DpnI	GATC	5 cut(s)	13, 174, 455, 804, 819
DpnII	GATC	5 cut(s)	11, 172, 453, 802, 817
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	3 cut(s)	201, 368, 471
EarI	CTCTTC	3 cut(s)	201, 368, 471
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	775, 1045
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	998
EcoO65I	GGTNACC	1 cut(s)	998
EcoRI	GAATTC	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	775, 1045
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	2 cut(s)	775, 1045
FaeI	CATG	2 cut(s)	436, 843
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	2 cut(s)	432, 839
FauNDI	CATATG	1 cut(s)	928
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	214, 251, 340, 968, 971
FokI	GGATG	4 cut(s)	62, 384, 512, 1112
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	214, 251, 340, 968, 971
FspBI	CTAG	3 cut(s)	300, 1046, 1251
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	5 cut(s)	214, 251, 340, 968, 971
GsuI	CTGGAG	1 cut(s)	802
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	7 cut(s)	309, 383, 401, 416, 491, 535, 677
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	436, 843
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	1 cut(s)	481
HpaII	CCGG	7 cut(s)	309, 383, 401, 416, 491, 535, 677
HphI	GGTGA	4 cut(s)	209, 431, 1010, 1022
Hpy166II	GTNNAC	5 cut(s)	550, 562, 620, 863, 1042
Hpy188I	TCNGA	9 cut(s)	138, 449, 641, 673, 733, 895, 921, 1078, 1187
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	5 cut(s)	550, 562, 620, 863, 1042
HpyAV	CCTTC	7 cut(s)	145, 166, 826, 900, 984, 1076, 1285
HpyCH4III	ACNGT	4 cut(s)	258, 860, 959, 1004
HpyCH4IV	ACGT	1 cut(s)	1242
HpyCH4V	TGCA	9 cut(s)	250, 394, 436, 704, 710, 916, 967, 988, 993
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 1253
HpyF3I	CTNAG	4 cut(s)	137, 242, 483, 1170
HpySE526I	ACGT	1 cut(s)	1242
Hsp92II	CATG	2 cut(s)	436, 843
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	5 cut(s)	11, 172, 453, 802, 817
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	4 cut(s)	225, 262, 957, 979
LweI	GCATC	6 cut(s)	403, 445, 501, 925, 951, 1254
MaeI	CTAG	3 cut(s)	300, 1046, 1251
MaeII	ACGT	1 cut(s)	1242
MaeIII	GTNAC	4 cut(s)	197, 295, 418, 998
MalI	GATC	5 cut(s)	13, 174, 455, 804, 819
MboI	GATC	5 cut(s)	11, 172, 453, 802, 817
MflI	RGATCY	2 cut(s)	11, 453
MhlI	GDGCHC	4 cut(s)	98, 353, 414, 839
MluCI	AATT	8 cut(s)	17, 284, 357, 806, 821, 866, 1027, 1133
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	910
MnlI	CCTC	8 cut(s)	202, 401, 538, 595, 642, 1098, 1101, 1206
Mph1103I	ATGCAT	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	26, 983
MslI	CAYNNNNRTG	1 cut(s)	911
MspA1I	CMGCKG	2 cut(s)	764, 970
MspI	CCGG	7 cut(s)	309, 383, 401, 416, 491, 535, 677
MspR9I	CCNGG	5 cut(s)	143, 384, 416, 535, 677
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	348, 1253
NciI	CCSGG	4 cut(s)	384, 416, 535, 677
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	5 cut(s)	11, 172, 453, 802, 817
NlaIII	CATG	2 cut(s)	436, 843
NlaIV	GGNNCC	6 cut(s)	352, 413, 489, 495, 627, 1273
NmuCI	GTSAC	2 cut(s)	197, 998
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	1 cut(s)	843
PceI	AGGCCT	1 cut(s)	155
PciI	ACATGT	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	215, 252, 341, 969, 972
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	839
PshAI	GACNNNNGTC	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	998
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	6 cut(s)	352, 413, 489, 495, 627, 1273
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	11, 453
PvuII	CAGCTG	2 cut(s)	764, 970
RsaI	GTAC	5 cut(s)	133, 185, 980, 1041, 1201
RsaNI	GTAC	5 cut(s)	132, 184, 979, 1040, 1200
RseI	CAYNNNNRTG	1 cut(s)	911
SaqAI	TTAA	2 cut(s)	26, 983
SatI	GCNGC	5 cut(s)	214, 251, 340, 968, 971
Sau3AI	GATC	5 cut(s)	11, 172, 453, 802, 817
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	5 cut(s)	143, 384, 416, 535, 677
SduI	GDGCHC	4 cut(s)	98, 353, 414, 839
SfaNI	GCATC	6 cut(s)	403, 445, 501, 925, 951, 1254
SfcI	CTRYAG	1 cut(s)	955
SmiMI	CAYNNNNRTG	1 cut(s)	911
Sse9I	AATT	8 cut(s)	17, 284, 357, 806, 821, 866, 1027, 1133
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	3 cut(s)	65, 339, 751
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	3 cut(s)	300, 1046, 1251
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	5 cut(s)	141, 382, 414, 533, 675
StyI	CCWWGG	2 cut(s)	775, 1045
TaaI	ACNGT	4 cut(s)	258, 860, 959, 1004
TaiI	ACGT	1 cut(s)	1245
TaqI	TCGA	2 cut(s)	690, 816
TasI	AATT	8 cut(s)	17, 284, 357, 806, 821, 866, 1027, 1133
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	26, 983
Tru9I	TTAA	2 cut(s)	26, 983
TscAI	CASTG	2 cut(s)	918, 1096
TseFI	GTSAC	2 cut(s)	197, 998
TseI	GCWGC	4 cut(s)	213, 250, 967, 970
Tsp45I	GTSAC	2 cut(s)	197, 998
TspDTI	ATGAA	8 cut(s)	66, 148, 219, 258, 421, 915, 1008, 1201
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	918, 1096
XapI	RAATTY	3 cut(s)	17, 357, 1133
XceI	RCATGY	1 cut(s)	843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XmaJI	CCTAGG	1 cut(s)	1045
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	3 cut(s)	300, 1046, 1251
ZrmI	AGTACT	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.