Rroxscaffold_1G00037290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010590
Physical Location & Seq
Forward (+)
54349181 .. 54350470
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037290.1

Sequence Viewer

Length: 957 bp
ATGTCCTATAGATCGAAATTCCCGTTAAAGAGCAAGAGCAAGAAGAATGTGGATGAAGAAGACAAGGCAGAAAAAGGAAGAAAAGAGACTATTCAGCGCTCTCTCTTGGTGGCTGCGGGGAAGCGATTGATGAGCAATGCTGCGCCGGAAAAGAAAGCCTTCATTCCCGACGATCATCGCTCTCTATACCTCTCTTCGGTGACTACGAAGACGGCAGCAAGGTTATCCGGCGATGGTCTTCCCCGTTATATGGGTTGCGGTGCTTGGGGCTCCAAAATTCTTCTCGGGGCGGCACCACCTCCAATCGAGAAAATATTTCGTTACCCCTTTACGCACTCCGACCCGGCTTGTCGGTTCGATATATCTTGTGCGGTTGCGAGGCACAAATATATTGGTTTCGATGGTGGTTCAAGCTTTCGCTTTGACACGGCTGACCCCAACCAAGGCTGGAGAAAACTAATGTGGGCCGATCAATTCTCTTTCGATCAATTCTATTTTAAGGGCACATGTTTGGTTGTGAATGATGGTAAGCAATTTGTGCTTTTCACATTCCAACCCTCCGAAGGTCATCACATATCGGTGCATCTGATTTCATATGACTTCAATAGCATCACACAAGACTACGATCAAGTGCAGCTGCCTTCGTACTTAATGGAATGCAAGGGTGATCGTCTTGGTGATTTTTCATTACCCAATTACCAGCTGGTACACCTAGGAGATAAGACCGTCTGCCTTCTTATGTACGAATTTCGCCCCGGTGGAGTGGATGAGAGGGAGAAGAAGATGATTAGGTCTGTTGAATTTGCCACATTCACATTCAAAGTCAAAGACAATGCTAAGTCCTTGAAAACCAGATTTCTACCTCGTACTCCAAAGCTCATATATGATGATGACAATGATGATGATGTGGACGTGGCTTCTAGGGCTGGACAGATGCTTGGTGCCTTCTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.08

Weight (kDa)

8.84

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 292, 941
AciI CCGC 4 cut(s) 116, 258, 290, 371
AcsI RAATTY 4 cut(s) 17, 276, 746, 800
AfaI GTAC 4 cut(s) 647, 708, 743, 868
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 196, 250, 443, 563
AflIII ACRYGT 1 cut(s) 506
AgsI TTSAA 5 cut(s) 411, 604, 800, 820, 847
AjiI CACGTC 1 cut(s) 913
AluBI AGCT 4 cut(s) 414, 637, 703, 877
AluI AGCT 4 cut(s) 414, 637, 703, 877
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 284
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 5 cut(s) 113, 140, 215, 634, 637
ApoI RAATTY 4 cut(s) 17, 276, 746, 800
Asp700I GAANNNNTTC 1 cut(s) 158
AspA2I CCTAGG 1 cut(s) 712
AspLEI GCGC 2 cut(s) 99, 145
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 2 cut(s) 344, 756
AsuHPI GGTGA 3 cut(s) 211, 677, 689
AvaI CYCGRG 1 cut(s) 284
AvrII CCTAGG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 506
BanI GGYRCC 2 cut(s) 292, 941
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 3 cut(s) 66, 215, 230
BbvI GCAGC 5 cut(s) 100, 127, 227, 624, 646
BccI CCATC 3 cut(s) 227, 395, 518
BceAI ACGGC 2 cut(s) 228, 444
BcnI CCSGG 2 cut(s) 344, 756
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 2 cut(s) 713, 921
BfmI CTRYAG 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 100
BisI GCNGC 6 cut(s) 114, 141, 216, 291, 635, 638
BlnI CCTAGG 1 cut(s) 712
BlsI GCNGC 6 cut(s) 115, 142, 217, 292, 636, 639
Bme1390I CCNGG 2 cut(s) 344, 756
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 913
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 3 cut(s) 271, 294, 943
BmrFI CCNGG 2 cut(s) 344, 756
BmsI GCATC 3 cut(s) 592, 618, 924
BpiI GAAGAC 3 cut(s) 66, 215, 230
BpmI CTGGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 344, 756
BsaJI CCNNGG 3 cut(s) 442, 712, 754
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 250, 443, 563
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 442, 712, 754
BseGI GGATG 2 cut(s) 58, 772
BseLI CCNNNNNNNGG 4 cut(s) 196, 250, 443, 563
BseMI GCAATG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 5 cut(s) 100, 127, 227, 624, 646
BsgI GTGCAG 1 cut(s) 653
BshFI GGCC 1 cut(s) 467
BshNI GGYRCC 2 cut(s) 292, 941
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 4 cut(s) 146, 228, 344, 756
BslI CCNNNNNNNGG 4 cut(s) 196, 250, 443, 563
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 272, 506
Bsp143I GATC 6 cut(s) 11, 172, 469, 484, 625, 667
BspACI CCGC 4 cut(s) 116, 258, 290, 371
BspANI GGCC 1 cut(s) 467
BspLI GGNNCC 3 cut(s) 271, 294, 943
BspT107I GGYRCC 2 cut(s) 292, 941
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 442, 712, 754
BssMI GATC 6 cut(s) 11, 172, 469, 484, 625, 667
BssT1I CCWWGG 2 cut(s) 442, 712
Bst4CI ACNGT 1 cut(s) 727
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 538
BstDEI CTNAG 1 cut(s) 837
BstF5I GGATG 2 cut(s) 58, 772
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 145
BstKTI GATC 6 cut(s) 14, 175, 472, 487, 628, 670
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 6 cut(s) 11, 172, 469, 484, 625, 667
BstMWI GCNNNNNNNGC 2 cut(s) 538, 923
BstNSI RCATGY 1 cut(s) 510
BstSCI CCNGG 2 cut(s) 342, 754
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 506
BstV1I GCAGC 5 cut(s) 100, 127, 227, 624, 646
BstV2I GAAGAC 3 cut(s) 66, 215, 230
BsuRI GGCC 1 cut(s) 467
BtgZI GCGATG 2 cut(s) 161, 246
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 2 cut(s) 58, 772
CfoI GCGC 2 cut(s) 99, 145
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 4 cut(s) 646, 707, 742, 867
CviAII CATG 1 cut(s) 507
CviQI GTAC 4 cut(s) 646, 707, 742, 867
DdeI CTNAG 1 cut(s) 837
DpnI GATC 6 cut(s) 13, 174, 471, 486, 627, 669
DpnII GATC 6 cut(s) 11, 172, 469, 484, 625, 667
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 442, 712
Eco24I GRGCYC 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 442, 712
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 2 cut(s) 442, 712
FaeI CATG 1 cut(s) 510
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 1 cut(s) 506
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 6 cut(s) 114, 141, 216, 291, 635, 638
FokI GGATG 2 cut(s) 65, 779
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 6 cut(s) 114, 141, 216, 291, 635, 638
FspBI CTAG 2 cut(s) 713, 921
GlaI GCGC 2 cut(s) 98, 144
GluI GCNGC 6 cut(s) 114, 141, 216, 291, 635, 638
GsuI CTGGAG 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 467
HapII CCGG 4 cut(s) 146, 228, 344, 756
HhaI GCGC 2 cut(s) 99, 145
Hin1II CATG 1 cut(s) 510
Hin6I GCGC 2 cut(s) 97, 143
HinP1I GCGC 2 cut(s) 97, 143
HindIII AAGCTT 1 cut(s) 412
HpaII CCGG 4 cut(s) 146, 228, 344, 756
HphI GGTGA 3 cut(s) 211, 677, 689
Hpy166II GTNNAC 2 cut(s) 709, 910
Hpy188I TCNGA 3 cut(s) 340, 562, 588
Hpy188III TCNNGA 2 cut(s) 167, 307
Hpy8I GTNNAC 2 cut(s) 709, 910
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 169, 557, 651, 743, 955
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4IV ACGT 1 cut(s) 912
HpyCH4V TGCA 3 cut(s) 583, 634, 660
HpyF10VI GCNNNNNNNGC 2 cut(s) 538, 923
HpyF3I CTNAG 1 cut(s) 837
HpySE526I ACGT 1 cut(s) 912
Hsp92II CATG 1 cut(s) 510
HspAI GCGC 2 cut(s) 97, 143
Kzo9I GATC 6 cut(s) 11, 172, 469, 484, 625, 667
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 9 cut(s) 159, 241, 357, 433, 689, 713, 769, 865, 912
Lsp1109I GCAGC 5 cut(s) 100, 127, 227, 624, 646
LweI GCATC 3 cut(s) 592, 618, 924
MaeI CTAG 2 cut(s) 713, 921
MaeII ACGT 1 cut(s) 912
MaeIII GTNAC 2 cut(s) 199, 320
MalI GATC 6 cut(s) 13, 174, 471, 486, 627, 669
MboI GATC 6 cut(s) 11, 172, 469, 484, 625, 667
MhlI GDGCHC 2 cut(s) 272, 506
MluCI AATT 8 cut(s) 17, 276, 473, 488, 533, 694, 746, 800
MmeI TCCRAC 2 cut(s) 363, 577
MnlI CCTC 6 cut(s) 200, 309, 372, 568, 765, 873
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 3 cut(s) 26, 498, 650
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 637, 703
MspI CCGG 4 cut(s) 146, 228, 344, 756
MspR9I CCNGG 2 cut(s) 344, 756
Mva1269I GAATGC 1 cut(s) 662
MwoI GCNNNNNNNGC 2 cut(s) 538, 923
NciI CCSGG 2 cut(s) 344, 756
NdeI CATATG 1 cut(s) 595
NdeII GATC 6 cut(s) 11, 172, 469, 484, 625, 667
NlaIII CATG 1 cut(s) 510
NlaIV GGNNCC 3 cut(s) 271, 294, 943
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 510
PciI ACATGT 1 cut(s) 506
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 203
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 6 cut(s) 115, 142, 217, 292, 636, 639
PscI ACATGT 1 cut(s) 506
PspN4I GGNNCC 3 cut(s) 271, 294, 943
PspPI GGNCC 1 cut(s) 465
PvuII CAGCTG 2 cut(s) 637, 703
RsaI GTAC 4 cut(s) 647, 708, 743, 868
RsaNI GTAC 4 cut(s) 646, 707, 742, 867
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 3 cut(s) 26, 498, 650
SatI GCNGC 6 cut(s) 114, 141, 216, 291, 635, 638
Sau3AI GATC 6 cut(s) 11, 172, 469, 484, 625, 667
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 2 cut(s) 344, 756
SduI GDGCHC 2 cut(s) 272, 506
SfaNI GCATC 3 cut(s) 592, 618, 924
SfcI CTRYAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 578
Sse9I AATT 8 cut(s) 17, 276, 473, 488, 533, 694, 746, 800
SsiI CCGC 4 cut(s) 116, 258, 290, 371
SspI AATATT 1 cut(s) 315
SspMI CTAG 2 cut(s) 713, 921
StyD4I CCNGG 2 cut(s) 342, 754
StyI CCWWGG 2 cut(s) 442, 712
TaaI ACNGT 1 cut(s) 727
TaiI ACGT 1 cut(s) 915
TaqI TCGA 5 cut(s) 14, 306, 357, 399, 483
TasI AATT 8 cut(s) 17, 276, 473, 488, 533, 694, 746, 800
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 3 cut(s) 26, 498, 650
Tru9I TTAA 3 cut(s) 26, 498, 650
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 5 cut(s) 113, 140, 215, 634, 637
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 69, 151, 582, 675
XapI RAATTY 4 cut(s) 17, 276, 746, 800
XceI RCATGY 1 cut(s) 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmaJI CCTAGG 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 713, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.