Rh5DG308800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010590
Physical Location & Seq
Reverse (-)
39446454 .. 39447605
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG308800.1

Sequence Viewer

Length: 1152 bp
ATGAGCAATTTGCGCCAGGAAAAGAAAGCCTTCATTCCCGACGATCATCGCTCTCTATACCTCTGCTTCGGTGACTACGAAGACGGCAGCAAGGTCTCCTACACCATTCTATCACTCAGCTTGCGCCAACTGTTTTCTGCTTCATATTCTCCACGGCAATTACAGCTGGTTACTAGGTTATCCGGCGATGGTCTTCCCCGTTATATGGGTTGCGGCGTTTGGGGCTCCAAAATTCTTCTCGGGGGTGGCGCAAAACCGAGTTATTTCCATAATCCGACACGAGGGCAGCCCGTTACTGGGTGTTTCATGCATCACCAAGTCAGAAAGATCTACTGTTTTGAGACAACAGAAGAGACTCAAGTGCCGGTGCCGCTCCCTAAGAAGATGCTGAATGGGAACATCCAGCCCCGACTGGTGGAGGTGGACAACAAATTATACGTTATTGGTACATCATTATCTTCCTTTGAGATGTTTGATGGCAATGATTGGTCTGAACTGGCACCACCTCCGATCGGATACTATTTCTGTTATCCATTTACACACTCAGACCCGGCTTATCACTTCGATATATATTATGCAGTTGCAAGCACAAATATATTGGTTTCTGTTGGTGGTTCAAGCTTCCGCTTTGACACAGCTAACCCTAACCAAGGTTGGAGAAAACTAATGTGGGCCGACCAATTCTCTTTTGATCAATTCTGTTTTAAGGGCACATGTTTGGTTGTGAATGATTGTAAGCAATTTGTGCTTTTCACATTCCAACCCTCCGATGGTCAGCACATATCAGTGCATCTGATTTCATATGACTTCAGTAGCATCACACAAGACTACAGTCAAGTGCAGCTGCCTTCGTACTTACTGGAATGCAAGGGTGATCGTCTTGGTGATTTTTCATTACCCAATTATCGGCTGGTACACATAGGAGATAAGGTCGTCTGCCTTCTTATGTCTGAACTTCGGCCCAGTGGAGTGGATGAGAGGAAGAAGAAGATGATTAGATCTGTTGAATTTGCCGCATTCACATTCAAAGTCAAAGACAATGCTAAGTCCTTGAAAATCAGATTTTTACCTCGTACTCCAAAGCTCATATATGATGATGATATGGACGTGGCTTTTAGGGCTGGACAGATGCTTGGTGCCTTCTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

43.59

Weight (kDa)

8.22

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 110 - 358 5.8e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 367, 499, 1136
AccBSI CCGCTC 1 cut(s) 373
AciI CCGC 4 cut(s) 213, 371, 625, 1014
AcsI RAATTY 2 cut(s) 231, 1007
AcuI CTGAAG 1 cut(s) 793
AfaI GTAC 4 cut(s) 448, 854, 915, 1075
AfiI CCNNNNNNNGG 9 cut(s) 205, 281, 296, 297, 415, 512, 650, 770, 906
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 4 cut(s) 618, 1007, 1027, 1054
AjiI CACGTC 1 cut(s) 1108
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 6 cut(s) 120, 166, 621, 638, 844, 1084
AluI AGCT 6 cut(s) 120, 166, 621, 638, 844, 1084
Alw26I GTCTC 3 cut(s) 100, 335, 347
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 672, 959
ApeKI GCWGC 4 cut(s) 87, 286, 841, 844
ApoI RAATTY 2 cut(s) 231, 1007
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 3 cut(s) 15, 126, 251
AspS9I GGNCC 2 cut(s) 672, 960
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 4 cut(s) 83, 305, 884, 896
AvaI CYCGRG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 713
BanI GGYRCC 3 cut(s) 367, 499, 1136
BanII GRGCYC 1 cut(s) 227
BauI CACGAG 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 87, 185
BbvI GCAGC 4 cut(s) 99, 298, 831, 853
BccI CCATC 3 cut(s) 182, 470, 764
BceAI ACGGC 2 cut(s) 100, 170
BciT130I CCWGG 1 cut(s) 17
BciVI GTATCC 1 cut(s) 509
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 3 cut(s) 100, 335, 347
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 829
BfuI GTATCC 1 cut(s) 509
BglII AGATCT 2 cut(s) 327, 998
BisI GCNGC 7 cut(s) 88, 214, 287, 371, 842, 845, 1014
BlsI GCNGC 7 cut(s) 89, 215, 288, 372, 843, 846, 1015
Bme1390I CCNGG 2 cut(s) 17, 551
BmeT110I CYCGRG 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 1108
BmgT120I GGNCC 2 cut(s) 672, 960
BmiI GGNNCC 4 cut(s) 226, 369, 501, 1138
BmrFI CCNGG 2 cut(s) 17, 551
BmrI ACTGGG 2 cut(s) 306, 957
BmsI GCATC 5 cut(s) 319, 375, 799, 825, 1119
BmuI ACTGGG 2 cut(s) 306, 957
BoxI GACNNNNGTC 1 cut(s) 831
BpiI GAAGAC 2 cut(s) 87, 185
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 152, 649
BsaXI ACNNNNNCTCC 2 cut(s) 915, 945
Bsc4I CCNNNNNNNGG 9 cut(s) 205, 281, 296, 297, 415, 512, 650, 770, 906
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 5 cut(s) 301, 417, 501, 864, 963
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 152, 649
BseGI GGATG 2 cut(s) 399, 979
BseLI CCNNNNNNNGG 9 cut(s) 205, 281, 296, 297, 415, 512, 650, 770, 906
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 130, 558
BseNI ACTGG 5 cut(s) 301, 417, 501, 864, 963
BseSI GKGCMC 1 cut(s) 713
BseXI GCAGC 4 cut(s) 99, 298, 831, 853
BsgI GTGCAG 1 cut(s) 860
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 2 cut(s) 674, 961
BshNI GGYRCC 3 cut(s) 367, 499, 1136
BsiEI CGRYCG 1 cut(s) 513
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 183, 365, 551
BslI CCNNNNNNNGG 9 cut(s) 205, 281, 296, 297, 415, 512, 650, 770, 906
BsmAI GTCTC 3 cut(s) 100, 335, 347
BsmI GAATGC 2 cut(s) 869, 1016
BsnI GGCC 2 cut(s) 674, 961
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 227, 713
Bsp143I GATC 6 cut(s) 43, 327, 510, 691, 874, 998
BspACI CCGC 4 cut(s) 213, 371, 625, 1014
BspANI GGCC 2 cut(s) 674, 961
BspCNI CTCAG 2 cut(s) 129, 557
BspLI GGNNCC 4 cut(s) 226, 369, 501, 1138
BspT107I GGYRCC 3 cut(s) 367, 499, 1136
BspTNI GGTCTC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 5 cut(s) 301, 417, 501, 864, 963
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 152, 649
BssMI GATC 6 cut(s) 43, 327, 510, 691, 874, 998
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 649
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 132, 335, 833
Bst6I CTCTTC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 122, 586
BstDEI CTNAG 4 cut(s) 116, 378, 544, 1044
BstDSI CCRYGG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 399, 979
BstHHI GCGC 3 cut(s) 15, 126, 251
BstKTI GATC 6 cut(s) 46, 330, 513, 694, 877, 1001
BstMAI GTCTC 3 cut(s) 100, 335, 347
BstMBI GATC 6 cut(s) 43, 327, 510, 691, 874, 998
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 6 cut(s) 12, 163, 222, 370, 745, 1118
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 717
BstPAI GACNNNNGTC 1 cut(s) 831
BstSCI CCNGG 2 cut(s) 15, 549
BstSFI CTRYAG 1 cut(s) 829
BstSLI GKGCMC 1 cut(s) 713
BstV1I GCAGC 4 cut(s) 99, 298, 831, 853
BstV2I GAAGAC 2 cut(s) 87, 185
BstX2I RGATCY 2 cut(s) 327, 998
BstXI CCANNNNNNTGG 1 cut(s) 970
BstYI RGATCY 2 cut(s) 327, 998
BsuI GTATCC 1 cut(s) 509
BsuRI GGCC 2 cut(s) 674, 961
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 32, 201
BtrI CACGTC 1 cut(s) 1108
BtsCI GGATG 2 cut(s) 399, 979
BtsIMutI CAGTG 2 cut(s) 792, 970
Cac8I GCNNGC 2 cut(s) 122, 586
CfoI GCGC 3 cut(s) 15, 126, 251
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 672, 960
Csp6I GTAC 4 cut(s) 447, 853, 914, 1074
CviAII CATG 2 cut(s) 307, 714
CviQI GTAC 4 cut(s) 447, 853, 914, 1074
DdeI CTNAG 4 cut(s) 116, 378, 544, 1044
DpnI GATC 6 cut(s) 45, 329, 512, 693, 876, 1000
DpnII GATC 6 cut(s) 43, 327, 510, 691, 874, 998
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 2 cut(s) 310, 717
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 2 cut(s) 306, 713
FauNDI CATATG 1 cut(s) 802
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 7 cut(s) 88, 214, 287, 371, 842, 845, 1014
FokI GGATG 2 cut(s) 386, 986
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 7 cut(s) 88, 214, 287, 371, 842, 845, 1014
FspBI CTAG 1 cut(s) 174
GlaI GCGC 3 cut(s) 14, 125, 250
GluI GCNGC 7 cut(s) 88, 214, 287, 371, 842, 845, 1014
HaeIII GGCC 2 cut(s) 674, 961
HapII CCGG 3 cut(s) 183, 365, 551
HhaI GCGC 3 cut(s) 15, 126, 251
Hin1II CATG 2 cut(s) 310, 717
Hin6I GCGC 3 cut(s) 13, 124, 249
HinP1I GCGC 3 cut(s) 13, 124, 249
HindIII AAGCTT 1 cut(s) 619
HinfI GANTC 1 cut(s) 355
HpaII CCGG 3 cut(s) 183, 365, 551
HphI GGTGA 4 cut(s) 83, 305, 884, 896
Hpy166II GTNNAC 2 cut(s) 424, 916
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 424, 916
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 40, 858, 950, 1150
HpyCH4III ACNGT 3 cut(s) 132, 335, 833
HpyCH4IV ACGT 2 cut(s) 438, 1107
HpyCH4V TGCA 6 cut(s) 310, 578, 584, 790, 841, 867
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 163, 222, 370, 745, 1118
HpyF3I CTNAG 4 cut(s) 116, 378, 544, 1044
HpySE526I ACGT 2 cut(s) 438, 1107
Hsp92II CATG 2 cut(s) 310, 717
HspAI GCGC 3 cut(s) 13, 124, 249
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 6 cut(s) 43, 327, 510, 691, 874, 998
LmnI GCTCC 2 cut(s) 230, 378
Lsp1109I GCAGC 4 cut(s) 99, 298, 831, 853
LweI GCATC 5 cut(s) 319, 375, 799, 825, 1119
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 438, 1107
MaeIII GTNAC 3 cut(s) 71, 169, 292
MalI GATC 6 cut(s) 45, 329, 512, 693, 876, 1000
MbiI CCGCTC 1 cut(s) 373
MboI GATC 6 cut(s) 43, 327, 510, 691, 874, 998
MboII GAAGA 9 cut(s) 92, 185, 227, 362, 394, 450, 994, 997, 1000
MflI RGATCY 2 cut(s) 327, 998
MhlI GDGCHC 2 cut(s) 227, 713
MluCI AATT 9 cut(s) 7, 158, 231, 431, 680, 695, 740, 901, 1007
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 3 cut(s) 299, 635, 784
MnlI CCTC 7 cut(s) 71, 275, 412, 516, 775, 972, 1080
Mph1103I ATGCAT 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 1 cut(s) 785
MspA1I CMGCKG 2 cut(s) 166, 844
MspI CCGG 3 cut(s) 183, 365, 551
MspR9I CCNGG 2 cut(s) 17, 551
Mva1269I GAATGC 2 cut(s) 869, 1016
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 6 cut(s) 12, 163, 222, 370, 745, 1118
NciI CCSGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 802
NdeII GATC 6 cut(s) 43, 327, 510, 691, 874, 998
NlaIII CATG 2 cut(s) 310, 717
NlaIV GGNNCC 4 cut(s) 226, 369, 501, 1138
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 1 cut(s) 717
PciI ACATGT 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 2 cut(s) 869, 1016
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 7 cut(s) 89, 215, 288, 372, 843, 846, 1015
Ple19I CGATCG 1 cut(s) 513
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PscI ACATGT 1 cut(s) 713
PshAI GACNNNNGTC 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 4 cut(s) 226, 369, 501, 1138
PspPI GGNCC 2 cut(s) 672, 960
PsuI RGATCY 2 cut(s) 327, 998
PvuI CGATCG 1 cut(s) 513
PvuII CAGCTG 2 cut(s) 166, 844
RsaI GTAC 4 cut(s) 448, 854, 915, 1075
RsaNI GTAC 4 cut(s) 447, 853, 914, 1074
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 7 cut(s) 88, 214, 287, 371, 842, 845, 1014
Sau3AI GATC 6 cut(s) 43, 327, 510, 691, 874, 998
Sau96I GGNCC 2 cut(s) 672, 960
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 17, 551
SduI GDGCHC 2 cut(s) 227, 713
SfaNI GCATC 5 cut(s) 319, 375, 799, 825, 1119
SfcI CTRYAG 1 cut(s) 829
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 9 cut(s) 7, 158, 231, 431, 680, 695, 740, 901, 1007
SsiI CCGC 4 cut(s) 213, 371, 625, 1014
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 15, 549
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 3 cut(s) 132, 335, 833
TaiI ACGT 2 cut(s) 441, 1110
TaqI TCGA 1 cut(s) 564
TasI AATT 9 cut(s) 7, 158, 231, 431, 680, 695, 740, 901, 1007
TauI GCSGC 3 cut(s) 216, 373, 1016
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 792, 970
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 87, 286, 841, 844
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 5 cut(s) 22, 132, 295, 789, 882
TspRI CASTG 2 cut(s) 792, 970
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 2 cut(s) 231, 1007
XceI RCATGY 1 cut(s) 717
XcmI CCANNNNNNNNNTGG 2 cut(s) 767, 907
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.