Rh5BG300300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010590
Physical Location & Seq
Reverse (-)
38741739 .. 38742428
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG300300.1

Sequence Viewer

Length: 690 bp
ATGTTGAATGGGAACATCCAGCCCTGGCTGGTGGAGGTGGACAACAAAGTATACGCTATTGGTAAATCATTATCCTCCTTTGAGATGTTTGATGGCAATGATTGGTGTGAACTGGCACCACCTCCAATCAGAAAATATTTCTGTTATCCCTTTACACACTCCGACCCGGCTTGTCAGTTCGATATATACTATGTAGTTGCAGGCACAAATATATTTGTTTCTGATGGTGGTTTAAGCTTCCGCTTTGACACAGCTGACCCCAACCAAGGCTGGATAAAACTAATGTGGGTCGATCAATTCTGTTTTAAGGGCACATGTTTGGTTGTGAATGATGGTAAGCAATTTGTGCTTTTCACATTCCAACCCTCCGGTGGTCAGCACATATCAGTGCATCTGATTTCATATGACTTCAATAGCATCACACAAGACTACAGTCAAGTGCAGCTACCTTCGTACTTAATGGAATGCAAGGGTGATCGTCTTGGTGATTTTTCATTACCCAATTACCAGCTGGTACACCTAGGAGATAAGGCCGTCTGCCTTCTTATGTCTGAACTTCGCCCCAGTGGAGTGGATGAGAGCGAGAAGATGATTAGGTCTGTTGAATTTGCCACATTCACATTCAAAGTCAAAGACAATGCTAAGTCCTTGAAAATCAGATTTCTACCTCATACTCCAAAGCTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.08

Weight (kDa)

5.49

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 7 - 226 2.5e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 51
AciI CCGC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 605
AfaI GTAC 2 cut(s) 455, 516
AfiI CCNNNNNNNGG 2 cut(s) 266, 371
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 5 cut(s) 7, 412, 605, 625, 652
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 5 cut(s) 237, 254, 445, 511, 682
AluI AGCT 5 cut(s) 237, 254, 445, 511, 682
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 605
AspA2I CCTAGG 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 485, 497
AvrII CCTAGG 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 454
BccI CCATC 3 cut(s) 86, 218, 326
BceAI ACGGC 1 cut(s) 518
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 1 cut(s) 443
BlnI CCTAGG 1 cut(s) 520
BlsI GCNGC 1 cut(s) 444
Bme1390I CCNGG 2 cut(s) 25, 167
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 25, 167
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 2 cut(s) 400, 426
BmuI ACTGGG 1 cut(s) 558
BoxI GACNNNNGTC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 23, 265, 520
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 371
Bse1I ACTGG 2 cut(s) 117, 564
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 3 cut(s) 23, 265, 520
BseGI GGATG 2 cut(s) 15, 580
BseLI CCNNNNNNNGG 2 cut(s) 266, 371
BseMI GCAATG 1 cut(s) 103
BseNI ACTGG 2 cut(s) 117, 564
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 454
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 167, 369
BslI CCNNNNNNNGG 2 cut(s) 266, 371
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 292, 475
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 533
BspLI GGNNCC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 2 cut(s) 117, 564
BssECI CCNNGG 3 cut(s) 23, 265, 520
BssMI GATC 2 cut(s) 292, 475
BssNAI GTATAC 1 cut(s) 52
BssT1I CCWWGG 2 cut(s) 265, 520
Bst1107I GTATAC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 15, 580
BstKTI GATC 2 cut(s) 295, 478
BstMBI GATC 2 cut(s) 292, 475
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 318
BstPAI GACNNNNGTC 1 cut(s) 432
BstSCI CCNGG 2 cut(s) 23, 165
BstSFI CTRYAG 1 cut(s) 430
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 571
BstZ17I GTATAC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 15, 580
BtsIMutI CAGTG 2 cut(s) 393, 571
Cac8I GCNNGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 454, 515
CviAII CATG 1 cut(s) 315
CviQI GTAC 2 cut(s) 454, 515
DdeI CTNAG 1 cut(s) 642
DpnI GATC 2 cut(s) 294, 477
DpnII GATC 2 cut(s) 292, 475
Eco130I CCWWGG 2 cut(s) 265, 520
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 265, 520
ErhI CCWWGG 2 cut(s) 265, 520
FaeI CATG 1 cut(s) 318
FatI CATG 1 cut(s) 314
FauNDI CATATG 1 cut(s) 403
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 2 cut(s) 2, 587
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 1 cut(s) 521
GluI GCNGC 1 cut(s) 443
HaeIII GGCC 1 cut(s) 533
HapII CCGG 2 cut(s) 167, 369
Hin1II CATG 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 235
HpaII CCGG 2 cut(s) 167, 369
HphI GGTGA 2 cut(s) 485, 497
Hpy166II GTNNAC 4 cut(s) 40, 52, 110, 517
Hpy188I TCNGA 6 cut(s) 131, 163, 223, 396, 553, 659
Hpy8I GTNNAC 4 cut(s) 40, 52, 110, 517
HpyAV CCTTC 2 cut(s) 459, 551
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 200, 391, 442, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 642
Hsp92II CATG 1 cut(s) 318
Kzo9I GATC 2 cut(s) 292, 475
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 2 cut(s) 400, 426
MaeI CTAG 1 cut(s) 521
MalI GATC 2 cut(s) 294, 477
MboI GATC 2 cut(s) 292, 475
MboII GAAGA 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 296, 341, 502, 605
MmeI TCCRAC 2 cut(s) 186, 385
MnlI CCTC 5 cut(s) 28, 85, 132, 376, 678
MseI TTAA 3 cut(s) 233, 306, 458
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 2 cut(s) 254, 511
MspI CCGG 2 cut(s) 167, 369
MspR9I CCNGG 2 cut(s) 25, 167
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 292, 475
NlaIII CATG 1 cut(s) 318
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 1 cut(s) 318
PciI ACATGT 1 cut(s) 314
PctI GAATGC 1 cut(s) 470
PkrI GCNGC 1 cut(s) 444
PscI ACATGT 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 117
PvuII CAGCTG 2 cut(s) 254, 511
RsaI GTAC 2 cut(s) 455, 516
RsaNI GTAC 2 cut(s) 454, 515
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 3 cut(s) 233, 306, 458
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 2 cut(s) 292, 475
ScrFI CCNGG 2 cut(s) 25, 167
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 2 cut(s) 400, 426
SfcI CTRYAG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 4 cut(s) 296, 341, 502, 605
SsiI CCGC 1 cut(s) 241
SspI AATATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 23, 165
StyI CCWWGG 2 cut(s) 265, 520
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 180, 291
TasI AATT 4 cut(s) 296, 341, 502, 605
Tru1I TTAA 3 cut(s) 233, 306, 458
Tru9I TTAA 3 cut(s) 233, 306, 458
TscAI CASTG 2 cut(s) 393, 571
TseI GCWGC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 390, 483
TspRI CASTG 2 cut(s) 393, 571
XapI RAATTY 1 cut(s) 605
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 508
XmaJI CCTAGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.