Rh5BG299900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010590
Physical Location & Seq
Reverse (-)
38689485 .. 38692109
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG299900.1

Sequence Viewer

Length: 825 bp
ATGTCATATAGATCTAAATTCCTGATAAAGAGCAAAAGCAAGGGTGACAAGAATGTGGATGAAGAAGACAAGGTGGAAAAAGGAAGAAAAGAGATTATTCAGCGCTCTCTCTTGGTAGCTGCAGGGAAGCGATTGATGAGCACTCTATGCCAGGAAAAGAAAGCCTTCATTCCCGACGATCATCGCTCTCTATACCTCTGCTTCGACCCAGCTTGTCAGTTCGATGTATACTATGCAGTTGCCGGCACAAATATATTAGTTTCTGATGGTGGTTCAAGCTTCCGCTTTGACACAAGTGACCCCAAGCAAGGCTGGAGAAGACTAATATCAGCCGACCAATTCTCTTTCGACCCATTCTGTTTTAAGGGCACAAGTGTAGTTGTGAATGATGGTAAACAGTTTGTGCTTTTCACATTCCAGCCCTCTGATGGTCAGCATATATCAGTGCATCTGATTGCATATGACTTTGATAGCATCACACAAGACTACAGTCGTGTGCCGCTGGCTCCATACTTGATGGAATACAAGGATGATCGTCTTGGTGATCTTCCATTACCTAATTATCGGCTAGTACACATAGGAGATAACGCTGTCTGCCTTCTTATGTCTAAACTCCTCCCCAATGGAGTGGATGAGAGGAAGAAGAAGATGATTAGGTGTGTTGAATTCGCAGCATTCACATTCAAAGTCAGAGACAATACTAGACTATCCTTAAAAATCAGATTCCTGCCTCATACCTCAAAGCTCATATATGATGATGACAATGATGATGATATGGACATGGCTTCTAGGACTGGACAGATGCTTGGTGCCTTCTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.31

Weight (kDa)

7.58

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 809
AccI GTMKAC 1 cut(s) 228
AciI CCGC 2 cut(s) 283, 500
AcsI RAATTY 2 cut(s) 17, 665
AfaI GTAC 1 cut(s) 573
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 308, 428
AgsI TTSAA 3 cut(s) 276, 665, 685
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 119, 212, 279, 745
AluI AGCT 4 cut(s) 119, 212, 279, 745
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 687
Aor51HI AGCGCT 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 119, 671
ApoI RAATTY 2 cut(s) 17, 665
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 56, 554
BaeGI GKGCMC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 809
BbsI GAAGAC 2 cut(s) 72, 325
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 106, 683
BccI CCATC 4 cut(s) 260, 383, 422, 511
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 3 cut(s) 569, 702, 789
BfmI CTRYAG 2 cut(s) 120, 487
BfoI RGCGCY 1 cut(s) 106
BglII AGATCT 1 cut(s) 11
BisI GCNGC 3 cut(s) 120, 500, 672
BlsI GCNGC 3 cut(s) 121, 501, 673
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 507, 811
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 3 cut(s) 457, 483, 792
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 2 cut(s) 72, 325
BpmI CTGGAG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 428
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 799
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 3 cut(s) 64, 535, 637
BseLI CCNNNNNNNGG 2 cut(s) 308, 428
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 2 cut(s) 106, 683
BseYI CCCAGC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 308, 428
BsmAI GTCTC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 143, 371
Bsp143I GATC 4 cut(s) 11, 178, 532, 544
BspACI CCGC 2 cut(s) 283, 500
BspLI GGNNCC 2 cut(s) 507, 811
BspMAI CTGCAG 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 242
BssMI GATC 4 cut(s) 11, 178, 532, 544
BssNAI GTATAC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 399, 491
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 244, 504
BstF5I GGATG 3 cut(s) 64, 535, 637
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 4 cut(s) 14, 181, 535, 547
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 4 cut(s) 11, 178, 532, 544
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 2 cut(s) 120, 487
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 106, 683
BstV2I GAAGAC 2 cut(s) 72, 325
BstX2I RGATCY 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 64, 535, 637
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 244, 504
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 1 cut(s) 572
CviAII CATG 1 cut(s) 781
CviQI GTAC 1 cut(s) 572
DpnI GATC 4 cut(s) 13, 180, 534, 546
DpnII GATC 4 cut(s) 11, 178, 532, 544
Eco47III AGCGCT 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 784
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 780
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 120, 500, 672
FokI GGATG 3 cut(s) 71, 542, 644
Fsp4HI GCNGC 3 cut(s) 120, 500, 672
FspBI CTAG 3 cut(s) 569, 702, 789
GlaI GCGC 1 cut(s) 104
GluI GCNGC 3 cut(s) 120, 500, 672
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 106
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 784
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 1 cut(s) 723
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 56, 554
Hpy166II GTNNAC 3 cut(s) 229, 395, 574
Hpy188I TCNGA 5 cut(s) 265, 427, 453, 692, 722
Hpy188III TCNNGA 2 cut(s) 22, 173
Hpy8I GTNNAC 3 cut(s) 229, 395, 574
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 175, 608, 823
HpyCH4III ACNGT 2 cut(s) 399, 491
HpyCH4V TGCA 4 cut(s) 122, 236, 448, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 784
HspAI GCGC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 11, 178, 532, 544
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 2 cut(s) 106, 683
LweI GCATC 3 cut(s) 457, 483, 792
MaeI CTAG 3 cut(s) 569, 702, 789
MaeIII GTNAC 2 cut(s) 44, 296
MalI GATC 4 cut(s) 13, 180, 534, 546
MboI GATC 4 cut(s) 11, 178, 532, 544
MboII GAAGA 8 cut(s) 74, 77, 96, 330, 539, 652, 655, 658
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 143, 371
MluCI AATT 4 cut(s) 17, 338, 559, 665
MnlI CCTC 6 cut(s) 206, 433, 626, 630, 741, 748
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 2 cut(s) 363, 713
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 244
NdeI CATATG 1 cut(s) 460
NdeII GATC 4 cut(s) 11, 178, 532, 544
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 784
NlaIV GGNNCC 2 cut(s) 507, 811
NmuCI GTSAC 2 cut(s) 44, 296
PctI GAATGC 1 cut(s) 674
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 723
PkrI GCNGC 3 cut(s) 121, 501, 673
PshAI GACNNNNGTC 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 507, 811
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SaqAI TTAA 2 cut(s) 363, 713
SatI GCNGC 3 cut(s) 120, 500, 672
Sau3AI GATC 4 cut(s) 11, 178, 532, 544
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 143, 371
SetI ASST 9 cut(s) 75, 121, 198, 214, 281, 559, 659, 740, 747
SfaNI GCATC 3 cut(s) 457, 483, 792
SfcI CTRYAG 2 cut(s) 120, 487
Sse9I AATT 4 cut(s) 17, 338, 559, 665
SsiI CCGC 2 cut(s) 283, 500
SspMI CTAG 3 cut(s) 569, 702, 789
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 399, 491
TaqI TCGA 3 cut(s) 204, 222, 348
TasI AATT 4 cut(s) 17, 338, 559, 665
TatI WGTACW 1 cut(s) 571
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 723
Tru1I TTAA 2 cut(s) 363, 713
Tru9I TTAA 2 cut(s) 363, 713
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 44, 296
TseI GCWGC 2 cut(s) 119, 671
Tsp45I GTSAC 2 cut(s) 44, 296
TspDTI ATGAA 2 cut(s) 75, 157
TspRI CASTG 1 cut(s) 450
XapI RAATTY 2 cut(s) 17, 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 3 cut(s) 569, 702, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.