Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Reverse (-)

18111787 .. 18114064

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGTGGTAAAATCGAGGTATGGAAGGCGGTTCAGGACTAAAAGGAGGAAGAAGAAAGCAGTGGTTGGAATTTTTGCCTTTGAAGTTGCAAAAGTGATGTCTAAGCTGGTCCATCTACGGGAATCCCTGAGTCCTAAACAAGTTGATAGGCTCAGGAAATTTATCTCAGATTCTATGGGGTTGAAAAAGCTTGTGTTACATGATGATGATTTCATTCGAGGTTTAATACCAGGTGAATTGTTTGAGAAAATGATCCCTTTAACAAAATTTGTGGCCTGGCTTGGGAAGAATCATTGTTCTGATGATCCAAGTTTGAAAGATTTTGAGCATGCTGTTACTGATTGGATCAACAATGGTGTTGACCCTTTTGTATGGGAACTTCCATGGGAGGAGATGGAAAAGGAAGCCAAAAAGATGAAGAGGTTCGTTAAAATAAATGCAGTTTTGTATGACGGGATGAAACATCTTTCGGATCTTGAACATACTTTGAAAGACATCACTGCCACCTTGGATGGTCCAATTTTGCTTGATTTTCAGAACAAGTTAGAGCTGAAGCGGCTCGAGGTGGAGAATTTGAAAGAGGGGTCTTTGTGGAACATGACTTTCAATTACATAGGTATCCTTTTGGCAAGATCTGTCTGCACAATTATCAGTCGTATCAAGTCTGTTTATGGAGTTCCTCATCAAATCATGGCAGATGCAGATCACACTAGTACTCCTAGTCCATCAATTTTCAGCAAGTACAAGCTGTTGGATGCTCCACCCGACACACTCAGTGCTGCTGCACTGCACTATGCAAATATTGTCATCCAAGTTGAACGTGCAGTAAGATGTTCTTTCGCTGGCAGAAGTGACCTGTACAGTATGTTGCCTGCAAATATGAGAGATGAGATAAATGAAAGGCTGCCCTCCATCAGGAGCTTGACTTTATCAGTTATAGATCTTGCAGCAGAGCGGAAGGTGGCAAGTGATGAAATATTAGAATGGTTAGTACCACTTGCTCATAATACGAAGAAATGGCACTCCAAGAGAAACTTTCAACTGAAAGCCTATGTTTCCAGGAGCCATGTGCTTCTGGTAGAAACCCTCTACTTTGCAAATCAACAGAAGACAGAAGCAACAATTATGGAACTTATTGTTGGTATGCAGTACAGCTGGGAAGCTGGGCTAGAAGCTCTACGAGAGAAGGACCGTCTCAGGCGTGCTCTAAAGGCAGCCTCCCTGGAAGACCAAGACAAAGGCAAGTCATCCATTGTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

421

Amino Acids

48.15

Weight (kDa)

9.3

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	24 - 77	2.3e-16	Domain of unknown function (DUF3475)
DUF668	PF05003	260 - 339	3.2e-16	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	955
AciI	CCGC	3 cut(s)	28, 556, 955
AclWI	GGATC	4 cut(s)	247, 299, 353, 480
AcsI	RAATTY	4 cut(s)	69, 158, 266, 571
AcuI	CTGAAG	1 cut(s)	572
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	5 cut(s)	715, 743, 860, 993, 1151
AfiI	CCNNNNNNNGG	3 cut(s)	118, 282, 915
AgsI	TTSAA	9 cut(s)	83, 184, 316, 479, 490, 577, 607, 818, 1040
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	4 cut(s)	229, 275, 1058, 1221
AjuI	GAANNNNNNNTTGG	2 cut(s)	1122, 1154
AluBI	AGCT	8 cut(s)	106, 190, 550, 748, 921, 1155, 1163, 1175
AluI	AGCT	8 cut(s)	106, 190, 550, 748, 921, 1155, 1163, 1175
Alw21I	GWGCWC	1 cut(s)	1207
Alw26I	GTCTC	1 cut(s)	1199
AlwI	GGATC	4 cut(s)	247, 299, 353, 480
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	5 cut(s)	779, 782, 904, 947, 1214
ApoI	RAATTY	4 cut(s)	69, 158, 266, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	109, 515, 1189
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	3 cut(s)	109, 515, 1189
BaeI	ACNNNNGTAYC	2 cut(s)	601, 634
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	2 cut(s)	1115, 1233
Bbv12I	GWGCWC	1 cut(s)	1207
BbvI	GCAGC	5 cut(s)	766, 769, 891, 959, 1226
BccI	CCATC	5 cut(s)	120, 388, 506, 733, 920
BciT130I	CCWGG	4 cut(s)	231, 277, 1060, 1223
BciVI	GTATCC	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	1199
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	4 cut(s)	711, 720, 1169, 1261
BfuI	GTATCC	1 cut(s)	629
BglII	AGATCT	2 cut(s)	632, 940
BisI	GCNGC	6 cut(s)	557, 780, 783, 905, 948, 1215
BlsI	GCNGC	6 cut(s)	558, 781, 784, 906, 949, 1216
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	4 cut(s)	231, 277, 1060, 1223
Bme18I	GGWCC	3 cut(s)	109, 515, 1189
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	3 cut(s)	109, 515, 1189
BmiI	GGNNCC	1 cut(s)	1064
BmrFI	CCNGG	4 cut(s)	231, 277, 1060, 1223
BmsI	GCATC	2 cut(s)	688, 745
BpiI	GAAGAC	2 cut(s)	1115, 1233
Bpu10I	CCTNAGC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	383, 507, 1221
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 282, 915
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	4 cut(s)	231, 277, 1060, 1223
BseDI	CCNNGG	3 cut(s)	383, 507, 1221
BseGI	GGATG	5 cut(s)	462, 517, 760, 807, 1247
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	3 cut(s)	118, 282, 915
BseMII	CTCAG	5 cut(s)	119, 166, 180, 787, 1210
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	5 cut(s)	766, 769, 891, 959, 1226
BseYI	CCCAGC	2 cut(s)	1155, 1163
BsgI	GTGCAG	4 cut(s)	625, 768, 773, 843
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	1207
BsiHKCI	CYCGRG	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	118, 282, 915
BsmAI	GTCTC	1 cut(s)	1199
BsmBI	CGTCTC	1 cut(s)	1199
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	1207
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	3 cut(s)	28, 556, 955
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	5 cut(s)	120, 165, 179, 786, 1209
BspLI	GGNNCC	1 cut(s)	1064
BspPI	GGATC	4 cut(s)	247, 299, 353, 480
BsrBI	CCGCTC	1 cut(s)	955
BsrGI	TGTACA	1 cut(s)	858
BssECI	CCNNGG	3 cut(s)	383, 507, 1221
BssMI	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
BssT1I	CCWWGG	2 cut(s)	383, 507
Bst2UI	CCWGG	4 cut(s)	231, 277, 1060, 1223
Bst4CI	ACNGT	2 cut(s)	863, 1193
Bst6I	CTCTTC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	858
BstC8I	GCNNGC	4 cut(s)	330, 844, 873, 1203
BstDEI	CTNAG	6 cut(s)	102, 128, 152, 166, 773, 1196
BstDSI	CCRYGG	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	913
BstF5I	GGATG	5 cut(s)	462, 517, 760, 807, 1247
BstKTI	GATC	7 cut(s)	255, 307, 348, 475, 635, 706, 943
BstMAI	GTCTC	1 cut(s)	1199
BstMBI	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 1211
BstNI	CCWGG	4 cut(s)	231, 277, 1060, 1223
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	229, 275, 1058, 1221
BstV1I	GCAGC	5 cut(s)	766, 769, 891, 959, 1226
BstV2I	GAAGAC	2 cut(s)	1115, 1233
BstX2I	RGATCY	3 cut(s)	472, 632, 940
BstYI	RGATCY	3 cut(s)	472, 632, 940
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	383
BtsCI	GGATG	5 cut(s)	462, 517, 760, 807, 1247
BtsI	GCAGTG	3 cut(s)	66, 498, 785
BtsIMutI	CAGTG	4 cut(s)	66, 498, 781, 785
Cac8I	GCNNGC	4 cut(s)	330, 844, 873, 1203
Cfr13I	GGNCC	3 cut(s)	109, 515, 1189
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	5 cut(s)	714, 742, 859, 992, 1150
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	6 cut(s)	200, 329, 384, 598, 691, 1067
CviQI	GTAC	5 cut(s)	714, 742, 859, 992, 1150
DdeI	CTNAG	6 cut(s)	102, 128, 152, 166, 773, 1196
DpnI	GATC	7 cut(s)	254, 306, 347, 474, 634, 705, 942
DpnII	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
DraIII	CACNNNGTG	1 cut(s)	776
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	383, 507
Eco47I	GGWCC	3 cut(s)	109, 515, 1189
Eco57I	CTGAAG	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	913
EcoRII	CCWGG	4 cut(s)	229, 275, 1058, 1221
EcoT14I	CCWWGG	2 cut(s)	383, 507
ErhI	CCWWGG	2 cut(s)	383, 507
Esp3I	CGTCTC	1 cut(s)	1199
FaeI	CATG	6 cut(s)	203, 332, 387, 601, 694, 1070
FalI	AAGNNNNNCTT	4 cut(s)	820, 852, 1019, 1051
FatI	CATG	6 cut(s)	199, 328, 383, 597, 690, 1066
Fnu4HI	GCNGC	6 cut(s)	557, 780, 783, 905, 948, 1215
FokI	GGATG	5 cut(s)	469, 524, 767, 794, 1234
Fsp4HI	GCNGC	6 cut(s)	557, 780, 783, 905, 948, 1215
FspBI	CTAG	4 cut(s)	711, 720, 1169, 1261
GluI	GCNGC	6 cut(s)	557, 780, 783, 905, 948, 1215
GsaI	CCCAGC	2 cut(s)	1159, 1167
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	6 cut(s)	203, 332, 387, 601, 694, 1070
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	4 cut(s)	122, 130, 170, 289
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	169, 301, 472, 537
Hpy188III	TCNNGA	4 cut(s)	34, 154, 476, 916
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	3 cut(s)	18, 952, 1180
HpyCH4III	ACNGT	2 cut(s)	863, 1193
HpyCH4IV	ACGT	1 cut(s)	820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 1211
HpyF3I	CTNAG	6 cut(s)	102, 128, 152, 166, 773, 1196
HpySE526I	ACGT	1 cut(s)	820
Hsp92II	CATG	6 cut(s)	203, 332, 387, 601, 694, 1070
Kzo9I	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
LmnI	GCTCC	3 cut(s)	763, 918, 1062
Lsp1109I	GCAGC	5 cut(s)	766, 769, 891, 959, 1226
LweI	GCATC	2 cut(s)	688, 745
MabI	ACCWGGT	1 cut(s)	229
MaeI	CTAG	4 cut(s)	711, 720, 1169, 1261
MaeII	ACGT	1 cut(s)	820
MaeIII	GTNAC	3 cut(s)	195, 334, 851
MalI	GATC	7 cut(s)	254, 306, 347, 474, 634, 705, 942
MbiI	CCGCTC	1 cut(s)	955
MboI	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
MboII	GAAGA	7 cut(s)	61, 64, 298, 430, 1024, 1120, 1238
MflI	RGATCY	3 cut(s)	472, 632, 940
MhlI	GDGCHC	1 cut(s)	1207
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	46, 732
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	3 cut(s)	224, 260, 429
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	1155
MspR9I	CCNGG	4 cut(s)	231, 277, 1060, 1223
MvaI	CCWGG	4 cut(s)	231, 277, 1060, 1223
MwoI	GCNNNNNNNGC	2 cut(s)	556, 1211
NcoI	CCATGG	1 cut(s)	383
NdeII	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
NlaIII	CATG	6 cut(s)	203, 332, 387, 601, 694, 1070
NlaIV	GGNNCC	1 cut(s)	1064
NmuCI	GTSAC	1 cut(s)	851
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	122, 170, 289
PfoI	TCCNGGA	1 cut(s)	1058
PkrI	GCNGC	6 cut(s)	558, 781, 784, 906, 949, 1216
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	4 cut(s)	229, 275, 1058, 1221
PspFI	CCCAGC	2 cut(s)	1155, 1163
PspGI	CCWGG	4 cut(s)	229, 275, 1058, 1221
PspN4I	GGNNCC	1 cut(s)	1064
PspPI	GGNCC	3 cut(s)	109, 515, 1189
PspXI	VCTCGAGB	1 cut(s)	560
PsuI	RGATCY	3 cut(s)	472, 632, 940
PvuII	CAGCTG	1 cut(s)	1155
RsaI	GTAC	5 cut(s)	715, 743, 860, 993, 1151
RsaNI	GTAC	5 cut(s)	714, 742, 859, 992, 1150
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	224, 260, 429
SatI	GCNGC	6 cut(s)	557, 780, 783, 905, 948, 1215
Sau3AI	GATC	7 cut(s)	252, 304, 345, 472, 632, 703, 940
Sau96I	GGNCC	3 cut(s)	109, 515, 1189
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	4 cut(s)	231, 277, 1060, 1223
SduI	GDGCHC	1 cut(s)	1207
SexAI	ACCWGGT	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	688, 745
Sfr274I	CTCGAG	1 cut(s)	560
SinI	GGWCC	3 cut(s)	109, 515, 1189
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	710
SphI	GCATGC	1 cut(s)	332
SsiI	CCGC	3 cut(s)	28, 556, 955
SspI	AATATT	2 cut(s)	802, 978
SspMI	CTAG	4 cut(s)	711, 720, 1169, 1261
StyD4I	CCNGG	4 cut(s)	229, 275, 1058, 1221
StyI	CCWWGG	2 cut(s)	383, 507
TaaI	ACNGT	2 cut(s)	863, 1193
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	3 cut(s)	14, 217, 561
TatI	WGTACW	4 cut(s)	713, 741, 858, 1149
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	3 cut(s)	122, 170, 289
Tru1I	TTAA	3 cut(s)	224, 260, 429
Tru9I	TTAA	3 cut(s)	224, 260, 429
TscAI	CASTG	4 cut(s)	66, 505, 781, 792
TseFI	GTSAC	1 cut(s)	851
TseI	GCWGC	5 cut(s)	779, 782, 904, 947, 1214
Tsp45I	GTSAC	1 cut(s)	851
TspDTI	ATGAA	5 cut(s)	202, 431, 473, 912, 987
TspRI	CASTG	4 cut(s)	66, 505, 781, 792
VpaK11BI	GGWCC	3 cut(s)	109, 515, 1189
XagI	CCTNNNNNAGG	1 cut(s)	913
XapI	RAATTY	4 cut(s)	69, 158, 266, 571
XceI	RCATGY	1 cut(s)	332
XhoI	CTCGAG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	4 cut(s)	711, 720, 1169, 1261
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.