Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002709.1

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Forward (+)

162204 .. 163574

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002709.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atgggaaagtggtgctttcacaggactacaaagaagaagaagaagttcttcaaaaaagagaagcagcagaaagcagtgattggagttttggccttcgatgttgcaagagtcatgtctaggctgctccatctgaggacgactctgagcgatgaacaagttaacaggctcagacaatatattttaaattccgtgggtatagaaaagcttgtgtcggatgacaatgatttcatacgaggtttaatatccagcgaattgtttgagaatgtggtcactgtggccaaatatgtggccagacttgtgaagaatcattcttctcatcctagtttgaaggcttttgagcatgctattagtgatttgatccataatggtgttgacccttatggatggcaactttcatgggagaagatggaaggggaggccaagatgatgaaggagttcatttcaaaaaatgcagatttgcgtgatgagatgaaacttctttcggatcttgaacatactttgaaagacatcactgccaccttagatggtccaattttgctcgagtttcagaacaaggtagagctgaagcggcgcgaggtggagaatttgaaagaggcctctctgtggaacacgacttacgattacgtaggcatccttttggcaacatctgtcttcacaattgtcagtaggatcaagcatgtttttggattgcctaaacttataacagatgctgaaaccaaagattctgatcacattagtcctagtccatcaatctttagcaagcacaagctgttggatgctccccccgacacactaggtgctgccgccttagcactgcactatgcaaatattattctcaaaattgaaactttagcgttatatccttctaggtgtcatcgggtcgacagaaatgacctgtacagtatgttgcctggaagtatcagagctgagctaaatgaaaggctgccctgcattgagggctcgactttatcactgccctgcattgaaagcacgacttcagcacttcaagatcttccaaagttggaggagtcaattcaggcaacaattaaaacaatagaatgggtatcaccgcttgctcgtaatatgaagaaatggcaatccaagtggaacattcaacagaaagcccagaaagcctctgttttcagtcatcctgtgcttctggtacaaaccctctactttgcaaatcatcagaagacagaagcaacaattacggatcttcttgttggtatgcattacaccaataatcttaaaagacaagtcaaggcaaaatctatgctggagagaggccgcaactcgcttaaaataaaagcagccaacttagaagcccaagacgaagccctggtctccattgacggagatcaaactgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

456

Amino Acids

51.76

Weight (kDa)

9.02

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	882
AccII	CGCG	1 cut(s)	573
AciI	CCGC	4 cut(s)	568, 804, 1070, 1288
AclWI	GGATC	4 cut(s)	352, 492, 677, 1221
AcoI	YGGCCR	2 cut(s)	276, 288
AcsI	RAATTY	2 cut(s)	184, 583
AcuI	CTGAAG	2 cut(s)	584, 981
AdeI	CACNNNGTG	1 cut(s)	797
AfaI	GTAC	2 cut(s)	899, 1164
AfiI	CCNNNNNNNGG	1 cut(s)	603
AjnI	CCWGG	2 cut(s)	910, 1338
AluBI	AGCT	5 cut(s)	205, 562, 769, 926, 931
AluI	AGCT	5 cut(s)	205, 562, 769, 926, 931
Alw26I	GTCTC	1 cut(s)	1348
AlwI	GGATC	4 cut(s)	352, 492, 677, 1221
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	6 cut(s)	90, 276, 288, 417, 594, 1285
ApeKI	GCWGC	5 cut(s)	64, 121, 800, 943, 1310
ApoI	RAATTY	2 cut(s)	184, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	1326, 1358
Asp700I	GAANNNNTTC	3 cut(s)	44, 47, 434
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	1059
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	527
BalI	TGGCCA	2 cut(s)	278, 290
BanII	GRGCYC	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	643, 1199
BbvI	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
BccI	CCATC	5 cut(s)	135, 378, 400, 518, 754
BciT130I	CCWGG	2 cut(s)	912, 1340
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	1348
BfaI	CTAG	5 cut(s)	117, 321, 741, 794, 867
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
BlpI	GCTNAGC	1 cut(s)	927
BlsI	GCNGC	8 cut(s)	66, 123, 570, 802, 805, 945, 1289, 1312
Bme1390I	CCNGG	2 cut(s)	912, 1340
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	527
BmrFI	CCNGG	2 cut(s)	912, 1340
BmsI	GCATC	3 cut(s)	639, 697, 766
BpiI	GAAGAC	2 cut(s)	643, 1199
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpmI	CTGGAG	1 cut(s)	1298
Bpu10I	CCTNAGC	1 cut(s)	808
Bpu1102I	GCTNAGC	1 cut(s)	927
BsaAI	YACGTR	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	726
BsaI	GGTCTC	1 cut(s)	1348
BsaJI	CCNNGG	2 cut(s)	189, 1338
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	912, 1340
BseDI	CCNNGG	2 cut(s)	189, 1338
BseGI	GGATG	6 cut(s)	220, 316, 389, 630, 781, 1147
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMII	CTCAG	4 cut(s)	122, 134, 181, 918
BseRI	GAGGAG	1 cut(s)	1040
BseXI	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
BsgI	GTGCAG	1 cut(s)	800
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	6 cut(s)	92, 278, 290, 419, 596, 1287
BsiHKCI	CYCGRG	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmAI	GTCTC	1 cut(s)	1348
BsnI	GGCC	6 cut(s)	92, 278, 290, 419, 596, 1287
Bso31I	GGTCTC	1 cut(s)	1348
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	962
Bsp1407I	TGTACA	1 cut(s)	897
Bsp143I	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
Bsp1720I	GCTNAGC	1 cut(s)	927
BspACI	CCGC	4 cut(s)	568, 804, 1070, 1288
BspANI	GGCC	6 cut(s)	92, 278, 290, 419, 596, 1287
BspCNI	CTCAG	4 cut(s)	123, 135, 180, 919
BspFNI	CGCG	1 cut(s)	573
BspPI	GGATC	4 cut(s)	352, 492, 677, 1221
BspTNI	GGTCTC	1 cut(s)	1348
BsrGI	TGTACA	1 cut(s)	897
BssECI	CCNNGG	2 cut(s)	189, 1338
BssMI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
Bst2UI	CCWGG	2 cut(s)	912, 1340
Bst4CI	ACNGT	3 cut(s)	274, 902, 1366
BstAUI	TGTACA	1 cut(s)	897
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	342, 761, 1074
BstDEI	CTNAG	7 cut(s)	131, 143, 167, 520, 808, 927, 1318
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	6 cut(s)	220, 316, 389, 630, 781, 1147
BstFNI	CGCG	1 cut(s)	573
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	7 cut(s)	360, 487, 672, 730, 1012, 1216, 1360
BstMAI	GTCTC	1 cut(s)	1348
BstMBI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
BstMWI	GCNNNNNNNGC	5 cut(s)	568, 809, 957, 987, 1130
BstNI	CCWGG	2 cut(s)	912, 1340
BstNSI	RCATGY	2 cut(s)	344, 680
BstSCI	CCNGG	2 cut(s)	910, 1338
BstSNI	TACGTA	1 cut(s)	625
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
BstV2I	GAAGAC	2 cut(s)	643, 1199
BstX2I	RGATCY	3 cut(s)	484, 1009, 1213
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	3 cut(s)	484, 1009, 1213
BsuRI	GGCC	6 cut(s)	92, 278, 290, 419, 596, 1287
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	6 cut(s)	220, 316, 389, 630, 781, 1147
BtsI	GCAGTG	4 cut(s)	81, 510, 812, 971
BtsIMutI	CAGTG	5 cut(s)	81, 270, 510, 812, 971
Cac8I	GCNNGC	3 cut(s)	342, 761, 1074
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	2 cut(s)	898, 1163
CspCI	CAANNNNNGTGG	2 cut(s)	1085, 1120
CviAII	CATG	4 cut(s)	112, 341, 396, 677
CviQI	GTAC	2 cut(s)	898, 1163
DdeI	CTNAG	7 cut(s)	131, 143, 167, 520, 808, 927, 1318
DpnI	GATC	7 cut(s)	359, 486, 671, 729, 1011, 1215, 1359
DpnII	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
DraI	TTTAAA	1 cut(s)	183
DraIII	CACNNNGTG	1 cut(s)	797
EaeI	YGGCCR	2 cut(s)	276, 288
Eco105I	TACGTA	1 cut(s)	625
Eco147I	AGGCCT	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	584, 981
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	910, 1338
EcoT22I	ATGCAT	1 cut(s)	1233
EcoT38I	GRGCYC	1 cut(s)	962
FaeI	CATG	4 cut(s)	115, 344, 399, 680
FalI	AAGNNNNNCTT	5 cut(s)	31, 32, 64, 979, 1011
FatI	CATG	4 cut(s)	111, 340, 395, 676
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
FokI	GGATG	6 cut(s)	227, 303, 396, 617, 788, 1134
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
FspBI	CTAG	5 cut(s)	117, 321, 741, 794, 867
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
GsuI	CTGGAG	1 cut(s)	1298
HaeIII	GGCC	6 cut(s)	92, 278, 290, 419, 596, 1287
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	115, 344, 399, 680
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	3 cut(s)	160, 373, 883
HindII	GTYRAC	3 cut(s)	160, 373, 883
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	5 cut(s)	108, 139, 304, 722, 1028
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	1059
Hpy166II	GTNNAC	3 cut(s)	160, 373, 883
Hpy188III	TCNNGA	2 cut(s)	488, 1007
Hpy8I	GTNNAC	3 cut(s)	160, 373, 883
HpyAV	CCTTC	5 cut(s)	103, 322, 404, 424, 873
HpyCH4III	ACNGT	3 cut(s)	274, 902, 1366
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	8 cut(s)	104, 452, 817, 824, 951, 981, 1181, 1231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	568, 809, 957, 987, 1130
HpyF3I	CTNAG	7 cut(s)	131, 143, 167, 520, 808, 927, 1318
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	4 cut(s)	115, 344, 399, 680
HspAI	GCGC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
LmnI	GCTCC	2 cut(s)	129, 784
Lsp1109I	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
LweI	GCATC	3 cut(s)	639, 697, 766
MaeI	CTAG	5 cut(s)	117, 321, 741, 794, 867
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	7 cut(s)	359, 486, 671, 729, 1011, 1215, 1359
MboI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	3 cut(s)	484, 1009, 1213
MhlI	GDGCHC	1 cut(s)	962
MlsI	TGGCCA	2 cut(s)	278, 290
MluCI	AATT	9 cut(s)	184, 251, 531, 583, 657, 840, 1032, 1044, 1206
MluNI	TGGCCA	2 cut(s)	278, 290
MlyI	GAGTC	3 cut(s)	117, 133, 1037
MmeI	TCCRAC	3 cut(s)	192, 753, 1002
Mox20I	TGGCCA	2 cut(s)	278, 290
Mph1103I	ATGCAT	1 cut(s)	1233
MroXI	GAANNNNTTC	3 cut(s)	44, 47, 434
MscI	TGGCCA	2 cut(s)	278, 290
MseI	TTAA	6 cut(s)	159, 182, 239, 1047, 1248, 1299
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	2 cut(s)	278, 290
MspR9I	CCNGG	2 cut(s)	912, 1340
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	2 cut(s)	912, 1340
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	5 cut(s)	568, 809, 957, 987, 1130
NdeII	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
NlaIII	CATG	4 cut(s)	115, 344, 399, 680
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	1233
NspI	RCATGY	2 cut(s)	344, 680
PaeI	GCATGC	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	539
PceI	AGGCCT	1 cut(s)	596
PdmI	GAANNNNTTC	3 cut(s)	44, 47, 434
PfeI	GAWTC	2 cut(s)	304, 722
PkrI	GCNGC	8 cut(s)	66, 123, 570, 802, 805, 945, 1289, 1312
PleI	GAGTC	3 cut(s)	116, 133, 1036
PpsI	GAGTC	3 cut(s)	116, 133, 1036
Ppu21I	YACGTR	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	910, 1338
PspGI	CCWGG	2 cut(s)	910, 1338
PspPI	GGNCC	1 cut(s)	527
PspXI	VCTCGAGB	1 cut(s)	539
PsrI	GAACNNNNNNTAC	2 cut(s)	599, 631
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	3 cut(s)	484, 1009, 1213
RsaI	GTAC	2 cut(s)	899, 1164
RsaNI	GTAC	2 cut(s)	898, 1163
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	881
SaqAI	TTAA	6 cut(s)	159, 182, 239, 1047, 1248, 1299
SatI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
Sau3AI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	3 cut(s)	117, 133, 1037
ScrFI	CCNGG	2 cut(s)	912, 1340
SduI	GDGCHC	1 cut(s)	962
SfaNI	GCATC	3 cut(s)	639, 697, 766
Sfr274I	CTCGAG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	527
SlaI	CTCGAG	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SnaBI	TACGTA	1 cut(s)	625
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	9 cut(s)	184, 251, 531, 583, 657, 840, 1032, 1044, 1206
SseBI	AGGCCT	1 cut(s)	596
SsiI	CCGC	4 cut(s)	568, 804, 1070, 1288
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	5 cut(s)	117, 321, 741, 794, 867
StuI	AGGCCT	1 cut(s)	596
StyD4I	CCNGG	2 cut(s)	910, 1338
TaaI	ACNGT	3 cut(s)	274, 902, 1366
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	96, 540, 882, 962
TasI	AATT	9 cut(s)	184, 251, 531, 583, 657, 840, 1032, 1044, 1206
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	3 cut(s)	571, 806, 1290
TfiI	GAWTC	2 cut(s)	304, 722
Tru1I	TTAA	6 cut(s)	159, 182, 239, 1047, 1248, 1299
Tru9I	TTAA	6 cut(s)	159, 182, 239, 1047, 1248, 1299
TscAI	CASTG	5 cut(s)	81, 277, 517, 819, 978
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	64, 121, 800, 943, 1310
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	8 cut(s)	165, 217, 384, 427, 443, 485, 951, 1100
TspGWI	ACGGA	3 cut(s)	178, 1226, 1368
TspRI	CASTG	5 cut(s)	81, 277, 517, 819, 978
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	2 cut(s)	184, 583
XceI	RCATGY	2 cut(s)	344, 680
XhoI	CTCGAG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	3 cut(s)	44, 47, 434
XspI	CTAG	5 cut(s)	117, 321, 741, 794, 867
Zsp2I	ATGCAT	1 cut(s)	1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.