Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Reverse (-)

60095127 .. 60097412

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG326700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGGAAAGTTGTGGTTTCACAGGACTACAAAGAAGAAGAATAAGTTCTTCAAAAAAGAGATGCAGCAGAAAGCAGTGATTGGGGTTTTGGCCTTCGAAGTTGCAAGAGTCATGTCTAGGCTGCTCCATCTATGGACATCTCTGAGCGATGAACAAGTTAACAGGTTCAGACAACATATTTTAAATTCCGTGGGTATAGAAAAGCTTGTGTCAGATGACAATGATTTGATACTAGGTTTAATATCCAGCGAATTGTTTGAGAATGTGGGCACTGTGGCAAAATATGTGGCCAGGTTTGGGAAGAATCATTCTTCTCATCCTAGTTTGAAGGCTTTTGAGCAAACTATTAGTGATTGGATCCATAATGGTGTTGACCCTTATGGATGGCAACTTTCATGGGAGAAGATGGAAGGGGAGGCCAAGATGATGAAGGAGTTCATTTCAAAAAATACAGATTTGTATGACAAGATGAAACTTCTTTCGGATCTTGAACATACTTTGAAAGACATCACTGCCACCTTAGATGGTCCAATTTTGCTTGAGTTTCAGAACAAGGTAGAGCTGAAGCGGCACGAGGTGGAGAATTTGAAAGAGGTCTCTCTGTGGAACACGACTTACGATTACGTAGGCATCCTTTTGGCAACATCTGTCTTCACAATTATCAGTAGGATCAAGCATGTTTTTGGATTGCCTAAACTTATAACAGATGCTGAAACCAAAGACTCTGATCACATTAGTCCTAGTCCATCAATCTTTAGCAAGCACAAGCTGTTGGATGCTCCCCCCGACACACTAGGTGCTGCCGCCTTAGCACTGCACTATGCAAATATTATTCTCAAAATTGAAACTTTGTTATATCCTTCTAGGTGTCATCGGGTCGACAGAAATGACCTGTACAGTATGTTGCCTGGAAGTATCAGAGCTGAGCTAAATGAAAGGCTGCCCTGCATTGAGGGCTCGACTTTATCACTGCCCTGCATTGAGAGCACGACTTCAGCACTTCAAGATCTTCCAAAGTTGGAGGAATCAATTCAGGCAACAATTAAAACAATAGAATGGGTATCACCGCTTGCTCATAATATGAAGAAATGGCAATCCAAGAGGAACATTCAACAGAAAGCCCAGAAAGCCTCTGTTTTCAGTCATCCTGTGCTTCTGGTGCAAACCCTTTACTATGCAAATCATCAGAAGACAGAAGCAACAATTACGGATCTTCTTGTTGGTATGCATTACACCTATAATCTTAAAAGACAAGTCAAGGCAAAATCTATGCTAGAGAGAGGCCGCAACTCGCTTAAAATAAAAGCAGCCAACTTAGAAGCCCAAGACGAAGCCCTGGTCTCCATTGACGGAGATCAAACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

455

Amino Acids

51.76

Weight (kDa)

8.63

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	29 - 84	4.1e-23	Domain of unknown function (DUF3475)
DUF668	PF05003	264 - 363	7.6e-18	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	879
AciI	CCGC	4 cut(s)	568, 804, 1067, 1285
AclWI	GGATC	5 cut(s)	352, 365, 492, 677, 1218
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	184, 583
AcuI	CTGAAG	2 cut(s)	584, 978
AdeI	CACNNNGTG	2 cut(s)	577, 797
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	9 cut(s)	52, 328, 444, 491, 502, 589, 845, 1004, 1112
AjnI	CCWGG	3 cut(s)	290, 907, 1335
AluBI	AGCT	5 cut(s)	205, 562, 769, 923, 928
AluI	AGCT	5 cut(s)	205, 562, 769, 923, 928
Alw21I	GWGCWC	1 cut(s)	989
Alw26I	GTCTC	2 cut(s)	601, 1345
AlwI	GGATC	5 cut(s)	352, 365, 492, 677, 1218
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	4 cut(s)	90, 288, 417, 1282
ApeKI	GCWGC	5 cut(s)	64, 121, 800, 940, 1307
ApoI	RAATTY	2 cut(s)	184, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	1323, 1355
Asp700I	GAANNNNTTC	3 cut(s)	44, 434, 1029
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	1056
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	959
BauI	CACGAG	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	643, 1196
Bbv12I	GWGCWC	1 cut(s)	989
BbvI	GCAGC	5 cut(s)	76, 108, 787, 927, 1319
BccI	CCATC	5 cut(s)	135, 378, 400, 518, 754
BciT130I	CCWGG	3 cut(s)	292, 909, 1337
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	601, 1345
BfaI	CTAG	7 cut(s)	117, 233, 321, 741, 794, 864, 1274
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 941, 1285, 1308
BlpI	GCTNAGC	1 cut(s)	924
BlsI	GCNGC	8 cut(s)	66, 123, 570, 802, 805, 942, 1286, 1309
Bme1390I	CCNGG	3 cut(s)	292, 909, 1337
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	292, 909, 1337
BmsI	GCATC	4 cut(s)	51, 639, 697, 766
BpiI	GAAGAC	2 cut(s)	643, 1196
Bpu10I	CCTNAGC	1 cut(s)	808
Bpu1102I	GCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	625
BsaI	GGTCTC	2 cut(s)	601, 1345
BsaJI	CCNNGG	2 cut(s)	189, 1335
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	292, 909, 1337
BseDI	CCNNGG	2 cut(s)	189, 1335
BseGI	GGATG	5 cut(s)	316, 389, 630, 781, 1144
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	134, 915
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	76, 108, 787, 927, 1319
BsgI	GTGCAG	1 cut(s)	800
BshFI	GGCC	4 cut(s)	92, 290, 419, 1284
BsiHKAI	GWGCWC	1 cut(s)	989
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	601, 1345
BsnI	GGCC	4 cut(s)	92, 290, 419, 1284
Bso31I	GGTCTC	2 cut(s)	601, 1345
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	272, 959, 989
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	4 cut(s)	568, 804, 1067, 1285
BspANI	GGCC	4 cut(s)	92, 290, 419, 1284
BspCNI	CTCAG	2 cut(s)	135, 916
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	5 cut(s)	352, 365, 492, 677, 1218
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	2 cut(s)	601, 1345
BsrGI	TGTACA	1 cut(s)	894
BssECI	CCNNGG	2 cut(s)	189, 1335
BssMI	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
BssSI	CACGAG	1 cut(s)	572
Bst2BI	CACGAG	1 cut(s)	572
Bst2UI	CCWGG	3 cut(s)	292, 909, 1337
Bst4CI	ACNGT	3 cut(s)	274, 899, 1363
BstAUI	TGTACA	1 cut(s)	894
BstBAI	YACGTR	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	761, 1071
BstDEI	CTNAG	5 cut(s)	143, 520, 808, 924, 1315
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	5 cut(s)	316, 389, 630, 781, 1144
BstKTI	GATC	7 cut(s)	360, 487, 672, 730, 1009, 1213, 1357
BstMAI	GTCTC	2 cut(s)	601, 1345
BstMBI	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
BstMWI	GCNNNNNNNGC	6 cut(s)	568, 809, 954, 984, 1127, 1159
BstNI	CCWGG	3 cut(s)	292, 909, 1337
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	290, 907, 1335
BstSLI	GKGCMC	1 cut(s)	272
BstSNI	TACGTA	1 cut(s)	625
BstV1I	GCAGC	5 cut(s)	76, 108, 787, 927, 1319
BstV2I	GAAGAC	2 cut(s)	643, 1196
BstX2I	RGATCY	4 cut(s)	357, 484, 1006, 1210
BstYI	RGATCY	4 cut(s)	357, 484, 1006, 1210
BsuRI	GGCC	4 cut(s)	92, 290, 419, 1284
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	5 cut(s)	316, 389, 630, 781, 1144
BtsI	GCAGTG	4 cut(s)	81, 510, 812, 968
BtsIMutI	CAGTG	5 cut(s)	81, 270, 510, 812, 968
Cac8I	GCNNGC	2 cut(s)	761, 1071
CaiI	CAGNNNCTG	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	895
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	3 cut(s)	112, 396, 677
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	5 cut(s)	143, 520, 808, 924, 1315
DpnI	GATC	7 cut(s)	359, 486, 671, 729, 1008, 1212, 1356
DpnII	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
DraI	TTTAAA	1 cut(s)	183
DraIII	CACNNNGTG	2 cut(s)	577, 797
EaeI	YGGCCR	1 cut(s)	288
Eco105I	TACGTA	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	959
Eco31I	GGTCTC	2 cut(s)	601, 1345
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	584, 978
EcoRII	CCWGG	3 cut(s)	290, 907, 1335
EcoT22I	ATGCAT	1 cut(s)	1230
EcoT38I	GRGCYC	1 cut(s)	959
FaeI	CATG	3 cut(s)	115, 399, 680
FatI	CATG	3 cut(s)	111, 395, 676
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 941, 1285, 1308
FokI	GGATG	5 cut(s)	303, 396, 617, 788, 1131
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 941, 1285, 1308
FspBI	CTAG	7 cut(s)	117, 233, 321, 741, 794, 864, 1274
GluI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 941, 1285, 1308
HaeIII	GGCC	4 cut(s)	92, 290, 419, 1284
Hin1II	CATG	3 cut(s)	115, 399, 680
HincII	GTYRAC	3 cut(s)	160, 373, 880
HindII	GTYRAC	3 cut(s)	160, 373, 880
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	108, 304, 722, 1025
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	1056
Hpy166II	GTNNAC	3 cut(s)	160, 373, 880
Hpy188I	TCNGA	9 cut(s)	144, 170, 214, 484, 549, 727, 920, 1188, 1367
Hpy188III	TCNNGA	2 cut(s)	488, 1004
Hpy8I	GTNNAC	3 cut(s)	160, 373, 880
HpyAV	CCTTC	5 cut(s)	103, 322, 404, 424, 870
HpyCH4III	ACNGT	3 cut(s)	274, 899, 1363
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	9 cut(s)	64, 104, 817, 824, 948, 978, 1162, 1178, 1228
HpyF10VI	GCNNNNNNNGC	6 cut(s)	568, 809, 954, 984, 1127, 1159
HpyF3I	CTNAG	5 cut(s)	143, 520, 808, 924, 1315
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	115, 399, 680
Ksp22I	TGATCA	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
LmnI	GCTCC	2 cut(s)	129, 784
Lsp1109I	GCAGC	5 cut(s)	76, 108, 787, 927, 1319
LweI	GCATC	4 cut(s)	51, 639, 697, 766
MaeI	CTAG	7 cut(s)	117, 233, 321, 741, 794, 864, 1274
MaeII	ACGT	1 cut(s)	624
MalI	GATC	7 cut(s)	359, 486, 671, 729, 1008, 1212, 1356
MboI	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
MflI	RGATCY	4 cut(s)	357, 484, 1006, 1210
MhlI	GDGCHC	3 cut(s)	272, 959, 989
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	9 cut(s)	184, 251, 531, 583, 657, 840, 1029, 1041, 1203
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	117, 716
MmeI	TCCRAC	2 cut(s)	753, 999
MnlI	CCTC	8 cut(s)	409, 568, 586, 946, 1015, 1095, 1141, 1274
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	1230
MroXI	GAANNNNTTC	3 cut(s)	44, 434, 1029
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	6 cut(s)	159, 182, 239, 1044, 1245, 1296
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	3 cut(s)	292, 909, 1337
MvaI	CCWGG	3 cut(s)	292, 909, 1337
MwoI	GCNNNNNNNGC	6 cut(s)	568, 809, 954, 984, 1127, 1159
NdeII	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
NlaIII	CATG	3 cut(s)	115, 399, 680
NlaIV	GGNNCC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	1230
NspI	RCATGY	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	96
PdmI	GAANNNNTTC	3 cut(s)	44, 434, 1029
PfeI	GAWTC	2 cut(s)	304, 1025
PkrI	GCNGC	8 cut(s)	66, 123, 570, 802, 805, 942, 1286, 1309
PleI	GAGTC	2 cut(s)	116, 716
PpsI	GAGTC	2 cut(s)	116, 716
Ppu21I	YACGTR	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	701
Psp6I	CCWGG	3 cut(s)	290, 907, 1335
PspGI	CCWGG	3 cut(s)	290, 907, 1335
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	527
PsrI	GAACNNNNNNTAC	2 cut(s)	599, 631
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	4 cut(s)	357, 484, 1006, 1210
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	878
SaqAI	TTAA	6 cut(s)	159, 182, 239, 1044, 1245, 1296
SatI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 941, 1285, 1308
Sau3AI	GATC	7 cut(s)	357, 484, 669, 727, 1006, 1210, 1354
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	2 cut(s)	117, 716
ScrFI	CCNGG	3 cut(s)	292, 909, 1337
SduI	GDGCHC	3 cut(s)	272, 959, 989
SfaNI	GCATC	4 cut(s)	51, 639, 697, 766
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SnaBI	TACGTA	1 cut(s)	625
Sse9I	AATT	9 cut(s)	184, 251, 531, 583, 657, 840, 1029, 1041, 1203
SsiI	CCGC	4 cut(s)	568, 804, 1067, 1285
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	7 cut(s)	117, 233, 321, 741, 794, 864, 1274
StyD4I	CCNGG	3 cut(s)	290, 907, 1335
TaaI	ACNGT	3 cut(s)	274, 899, 1363
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	96, 879, 959
TasI	AATT	9 cut(s)	184, 251, 531, 583, 657, 840, 1029, 1041, 1203
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	3 cut(s)	571, 806, 1287
TfiI	GAWTC	2 cut(s)	304, 1025
Tru1I	TTAA	6 cut(s)	159, 182, 239, 1044, 1245, 1296
Tru9I	TTAA	6 cut(s)	159, 182, 239, 1044, 1245, 1296
TscAI	CASTG	5 cut(s)	81, 277, 517, 819, 975
TseI	GCWGC	5 cut(s)	64, 121, 800, 940, 1307
TspDTI	ATGAA	7 cut(s)	165, 384, 427, 443, 485, 948, 1097
TspGWI	ACGGA	3 cut(s)	178, 1223, 1365
TspRI	CASTG	5 cut(s)	81, 277, 517, 819, 975
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	2 cut(s)	184, 583
XceI	RCATGY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	3 cut(s)	44, 434, 1029
XspI	CTAG	7 cut(s)	117, 233, 321, 741, 794, 864, 1274
Zsp2I	ATGCAT	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.