Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Forward (+)

9328661 .. 9330035

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGGAAGTTGTGGTTTCACAGGACTACAAAGAAGAAGAATAAGTTCTTCAAAAAAGAGAAGCAGCAGAAAGCAGTGATTGGAGTTTTGGCCTTCGAAGTTGCAAGAGTCATGTCTAGGCTGCTCCATCTATGGACATCTCTGAGCGATGAACAAGTTAACAGGCTCAGACAACATATTTTAAATTCCGTGGGTATAGAAAAGCTTGTGTCAGATGACAATGAGTTCATACTAGGTTTAATATCCAGCGAATTGTTTGAGAATGTGGTCACTGTGGCAAAATATGTGGCCAGGCTCGGGAAGAATCATTCTTCTCATCCTAAAGATGGAAAGGGAGGCCAGGAGGCCAACAAGATGAAGGAGTTCATTTCAATAAATGCAGATTTGTATGACAAGATGAAACTTCTTTCGGATCTTGAACATACTTTGAAAGACATCACTGCCACCTTAGATGGTCCAATTTTGCTTGAGTTTCAGAACAAGGTAGAGATGAAGCGGCACGAGGTGGAGAATTTGAAAGAGGTCTCTCTGTGGAACACGACTTACGATTACGTAGGCATCCTTTTGGCAACATCTGTCTTCACAATTGTCAGTAGGATCAAGCATGTTTTTGGACTGCCTAAACTTATAACAGATGCTGAAACCAAAGATTCTGATCACATTAGTCCTAGTCCATCAATCTTTAGCAAGCACAAGCTGTGTCATCGTGACAGAAATGACCTGTACAGTATGTTGCCTGGAAGTATCAGAGCTGAGCTAAATGAAAGGCTGCCCTGCATTGAGGGCTCGACTTTATCACTGCCCTGCATTGAGAGCACAACTTCAGCACTTCAAGATCTTCCAAAGTTGGAGGAGTCAATTCAGGCAACAATTAGAACAATAGAATGGGTATCACCGCTTGCTCATAATATGAAGAAATGGCAATCCAAGAGGAACATTCAACAGAAAGCCCAGAAAGCCTCTGTTTTCAGTCATCCTGTGCTTCTGGTACAAACCCTTTACTATGCAAATCATCAGAAGACAGAAGCAACAATTACGGGTCTTCTTGTTGGTATGCATTACACCTATAATCTTAAAAGACAAGTCAAGGCAAAATCTATGCTAGAGAAAGGCCGCAACTCGCTTAAAATAAAAGCAGCCAACTTAGAAGCCCAAAACGAAGCCCTGGTCTCCATTGACGGAGATCAAACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

398

Amino Acids

45.19

Weight (kDa)

9.29

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	29 - 84	1.6e-24	Domain of unknown function (DUF3475)
DUF668	PF05003	229 - 306	1.2e-07	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AciI	CCGC	3 cut(s)	496, 896, 1114
AclWI	GGATC	2 cut(s)	420, 605
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	184, 511
AcuI	CTGAAG	1 cut(s)	807
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	2 cut(s)	725, 990
AfiI	CCNNNNNNNGG	2 cut(s)	297, 326
AgsI	TTSAA	7 cut(s)	52, 372, 419, 430, 517, 833, 941
AjnI	CCWGG	4 cut(s)	290, 339, 736, 1164
AluBI	AGCT	4 cut(s)	205, 697, 752, 757
AluI	AGCT	4 cut(s)	205, 697, 752, 757
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	2 cut(s)	529, 1174
AlwI	GGATC	2 cut(s)	420, 605
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	5 cut(s)	90, 288, 337, 345, 1111
ApeKI	GCWGC	4 cut(s)	64, 121, 769, 1136
ApoI	RAATTY	2 cut(s)	184, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	1152, 1184
Asp700I	GAANNNNTTC	2 cut(s)	44, 362
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	885
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	788
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	3 cut(s)	571, 1025, 1034
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	4 cut(s)	76, 108, 756, 1148
BccI	CCATC	4 cut(s)	135, 320, 446, 682
BciT130I	CCWGG	4 cut(s)	292, 341, 738, 1166
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	529, 1174
BfaI	CTAG	4 cut(s)	117, 233, 669, 1103
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	6 cut(s)	65, 122, 497, 770, 1114, 1137
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	6 cut(s)	66, 123, 498, 771, 1115, 1138
Bme1390I	CCNGG	4 cut(s)	292, 341, 738, 1166
Bme18I	GGWCC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	455
BmrFI	CCNGG	4 cut(s)	292, 341, 738, 1166
BmsI	GCATC	2 cut(s)	567, 625
BpiI	GAAGAC	3 cut(s)	571, 1025, 1034
Bpu1102I	GCTNAGC	1 cut(s)	753
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	553
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	2 cut(s)	529, 1174
BsaJI	CCNNGG	2 cut(s)	189, 1164
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 326
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	4 cut(s)	292, 341, 738, 1166
BseDI	CCNNGG	2 cut(s)	189, 1164
BseGI	GGATG	3 cut(s)	316, 558, 973
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	297, 326
BseMII	CTCAG	3 cut(s)	134, 181, 744
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	4 cut(s)	76, 108, 756, 1148
BshFI	GGCC	5 cut(s)	92, 290, 339, 347, 1113
BsiHKAI	GWGCWC	1 cut(s)	818
BsiHKCI	CYCGRG	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	297, 326
BsmAI	GTCTC	2 cut(s)	529, 1174
BsnI	GGCC	5 cut(s)	92, 290, 339, 347, 1113
Bso31I	GGTCTC	2 cut(s)	529, 1174
BsoBI	CYCGRG	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	788, 818
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	5 cut(s)	412, 597, 655, 835, 1183
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	3 cut(s)	496, 896, 1114
BspANI	GGCC	5 cut(s)	92, 290, 339, 347, 1113
BspCNI	CTCAG	3 cut(s)	135, 180, 745
BspPI	GGATC	2 cut(s)	420, 605
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	2 cut(s)	529, 1174
BsrGI	TGTACA	1 cut(s)	723
BssECI	CCNNGG	2 cut(s)	189, 1164
BssMI	GATC	5 cut(s)	412, 597, 655, 835, 1183
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	4 cut(s)	292, 341, 738, 1166
Bst4CI	ACNGT	3 cut(s)	274, 728, 1192
BstAUI	TGTACA	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	553
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	689, 900
BstDEI	CTNAG	5 cut(s)	143, 167, 448, 753, 1144
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	316, 558, 973
BstKTI	GATC	5 cut(s)	415, 600, 658, 838, 1186
BstMAI	GTCTC	2 cut(s)	529, 1174
BstMBI	GATC	5 cut(s)	412, 597, 655, 835, 1183
BstMWI	GCNNNNNNNGC	3 cut(s)	783, 813, 956
BstNI	CCWGG	4 cut(s)	292, 341, 738, 1166
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	4 cut(s)	290, 339, 736, 1164
BstSNI	TACGTA	1 cut(s)	553
BstV1I	GCAGC	4 cut(s)	76, 108, 756, 1148
BstV2I	GAAGAC	3 cut(s)	571, 1025, 1034
BstX2I	RGATCY	2 cut(s)	412, 835
BstYI	RGATCY	2 cut(s)	412, 835
BsuRI	GGCC	5 cut(s)	92, 290, 339, 347, 1113
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	316, 558, 973
BtsI	GCAGTG	3 cut(s)	81, 438, 797
BtsIMutI	CAGTG	4 cut(s)	81, 270, 438, 797
Cac8I	GCNNGC	2 cut(s)	689, 900
CaiI	CAGNNNCTG	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	724, 989
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	2 cut(s)	112, 605
CviQI	GTAC	2 cut(s)	724, 989
DdeI	CTNAG	5 cut(s)	143, 167, 448, 753, 1144
DpnI	GATC	5 cut(s)	414, 599, 657, 837, 1185
DpnII	GATC	5 cut(s)	412, 597, 655, 835, 1183
DraI	TTTAAA	1 cut(s)	183
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	288
Eco105I	TACGTA	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	788
Eco31I	GGTCTC	2 cut(s)	529, 1174
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	296
EcoRII	CCWGG	4 cut(s)	290, 339, 736, 1164
EcoT22I	ATGCAT	1 cut(s)	1059
EcoT38I	GRGCYC	1 cut(s)	788
FaeI	CATG	2 cut(s)	115, 608
FatI	CATG	2 cut(s)	111, 604
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	6 cut(s)	65, 122, 497, 770, 1114, 1137
FokI	GGATG	3 cut(s)	303, 545, 960
FriOI	GRGCYC	1 cut(s)	788
Fsp4HI	GCNGC	6 cut(s)	65, 122, 497, 770, 1114, 1137
FspBI	CTAG	4 cut(s)	117, 233, 669, 1103
GluI	GCNGC	6 cut(s)	65, 122, 497, 770, 1114, 1137
HaeIII	GGCC	5 cut(s)	92, 290, 339, 347, 1113
Hin1II	CATG	2 cut(s)	115, 608
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	108, 304, 650, 854
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	885
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	9 cut(s)	144, 170, 214, 412, 477, 655, 749, 1017, 1196
Hpy188III	TCNNGA	4 cut(s)	298, 416, 707, 833
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	103, 352
HpyCH4III	ACNGT	3 cut(s)	274, 728, 1192
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	6 cut(s)	104, 380, 777, 807, 1007, 1057
HpyF10VI	GCNNNNNNNGC	3 cut(s)	783, 813, 956
HpyF3I	CTNAG	5 cut(s)	143, 167, 448, 753, 1144
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	115, 608
Ksp22I	TGATCA	1 cut(s)	655
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	412, 597, 655, 835, 1183
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	4 cut(s)	76, 108, 756, 1148
LweI	GCATC	2 cut(s)	567, 625
MaeI	CTAG	4 cut(s)	117, 233, 669, 1103
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	268, 707
MalI	GATC	5 cut(s)	414, 599, 657, 837, 1185
MboI	GATC	5 cut(s)	412, 597, 655, 835, 1183
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	412, 835
MhlI	GDGCHC	2 cut(s)	788, 818
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	8 cut(s)	184, 251, 459, 511, 585, 858, 870, 1032
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	117, 863
MmeI	TCCRAC	1 cut(s)	828
MnlI	CCTC	8 cut(s)	329, 337, 496, 514, 775, 844, 924, 970
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	1059
MroXI	GAANNNNTTC	2 cut(s)	44, 362
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	5 cut(s)	159, 182, 239, 1074, 1125
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	4 cut(s)	292, 341, 738, 1166
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	4 cut(s)	292, 341, 738, 1166
MwoI	GCNNNNNNNGC	3 cut(s)	783, 813, 956
NdeII	GATC	5 cut(s)	412, 597, 655, 835, 1183
NlaIII	CATG	2 cut(s)	115, 608
NmuCI	GTSAC	2 cut(s)	268, 707
NsiI	ATGCAT	1 cut(s)	1059
NspI	RCATGY	1 cut(s)	608
NspV	TTCGAA	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	44, 362
PfeI	GAWTC	2 cut(s)	304, 650
PkrI	GCNGC	6 cut(s)	66, 123, 498, 771, 1115, 1138
PleI	GAGTC	2 cut(s)	116, 862
PpsI	GAGTC	2 cut(s)	116, 862
Ppu21I	YACGTR	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	629
Psp6I	CCWGG	4 cut(s)	290, 339, 736, 1164
PspGI	CCWGG	4 cut(s)	290, 339, 736, 1164
PspPI	GGNCC	1 cut(s)	455
PsrI	GAACNNNNNNTAC	2 cut(s)	527, 559
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	2 cut(s)	412, 835
RsaI	GTAC	2 cut(s)	725, 990
RsaNI	GTAC	2 cut(s)	724, 989
SaqAI	TTAA	5 cut(s)	159, 182, 239, 1074, 1125
SatI	GCNGC	6 cut(s)	65, 122, 497, 770, 1114, 1137
Sau3AI	GATC	5 cut(s)	412, 597, 655, 835, 1183
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	2 cut(s)	117, 863
ScrFI	CCNGG	4 cut(s)	292, 341, 738, 1166
SduI	GDGCHC	2 cut(s)	788, 818
SfaNI	GCATC	2 cut(s)	567, 625
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SnaBI	TACGTA	1 cut(s)	553
Sse9I	AATT	8 cut(s)	184, 251, 459, 511, 585, 858, 870, 1032
SsiI	CCGC	3 cut(s)	496, 896, 1114
SspMI	CTAG	4 cut(s)	117, 233, 669, 1103
StyD4I	CCNGG	4 cut(s)	290, 339, 736, 1164
TaaI	ACNGT	3 cut(s)	274, 728, 1192
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	96, 788
TasI	AATT	8 cut(s)	184, 251, 459, 511, 585, 858, 870, 1032
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	2 cut(s)	499, 1116
TfiI	GAWTC	2 cut(s)	304, 650
Tru1I	TTAA	5 cut(s)	159, 182, 239, 1074, 1125
Tru9I	TTAA	5 cut(s)	159, 182, 239, 1074, 1125
TscAI	CASTG	4 cut(s)	81, 277, 445, 804
TseFI	GTSAC	2 cut(s)	268, 707
TseI	GCWGC	4 cut(s)	64, 121, 769, 1136
Tsp45I	GTSAC	2 cut(s)	268, 707
TspDTI	ATGAA	8 cut(s)	165, 217, 355, 371, 413, 506, 777, 926
TspGWI	ACGGA	2 cut(s)	178, 1194
TspRI	CASTG	4 cut(s)	81, 277, 445, 804
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	184, 511
XceI	RCATGY	1 cut(s)	608
XmnI	GAANNNNTTC	2 cut(s)	44, 362
XspI	CTAG	4 cut(s)	117, 233, 669, 1103
Zsp2I	ATGCAT	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.