Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00073

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Reverse (-)

8667 .. 10343

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATTTGGGAGCTTTACTGCGAATTGTTTGAGAATGTGGTCACTGTGGCAAAATATGTGGCCAGACTTGGGAAGAATCATTCTTCTCATCCTAGTTTGAAGGCTTTTGAGCAAGCTATTAGTGATTGGATCCATAATGGTGTTGACCCTTATGGATGGCAACTTTCATGGGAGAAGATGGAAGGGGAGGCCAAGATGATGAAGGAGTTCATTTCAAAAAATGCAGATTTGTATGACAAGATGAAACTTCTTTCGGATCTTGAACATACTTTGAAAGACATCACTGCCACCTTAGATGGTCCAATTTTGCTCGAGTTTCAGAACAAGGTAGAGCTGAAGCGGCGCGAGGTGGAGAATTTGAAAGAGGCCTCTCTGTGGAACACGACTTACGATTACGTAGGCATCCTTTTGGCAACATCTGTCTTCACAATTGTCACACTTCAAGATCTTCCAAAGTTGGAGGAGTCAATTCAGGCAACAATTAAAACAATAGAATGGGTATCACCGCTTGCTCGTAATATGAAGAAATGGCAATCCAAGTGGAACATTCAACAGAAAGCCCAGAAAGCCTCTGTTTTCAGTCATCCTGTGCTTCTGGTACAAACCCTCTTCTTTGCAAATCATCAGAAGACAGAAGCAACAATTACGGATCTTCTTGTTGGTATGCATTACACCAATAATCTTAAAAGACAAGTCAAGGCGAAATCTATGCTAGAGAGAGGCCGCAACTCGCTTAAAATAAAAGCAGCCAACTTAGAAGCCCAAAACGAAGCCCTGGTCTCCATTGACGGAGATCATACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

268

Amino Acids

30.79

Weight (kDa)

7.11

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	340, 506, 724
AclWI	GGATC	4 cut(s)	124, 137, 264, 657
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	69, 375
AgsI	TTSAA	7 cut(s)	100, 216, 263, 274, 361, 443, 551
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	3 cut(s)	13, 116, 334
AluI	AGCT	3 cut(s)	13, 116, 334
Alw26I	GTCTC	1 cut(s)	784
AlwI	GGATC	4 cut(s)	124, 137, 264, 657
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	4 cut(s)	60, 189, 366, 721
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	1 cut(s)	355
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	129
BbsI	GAAGAC	2 cut(s)	415, 635
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	3 cut(s)	150, 172, 290
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	2 cut(s)	93, 713
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	3 cut(s)	341, 724, 747
BlsI	GCNGC	3 cut(s)	342, 725, 748
Bme1390I	CCNGG	1 cut(s)	776
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	2 cut(s)	415, 635
BsaAI	YACGTR	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	774
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 375
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	4 cut(s)	88, 161, 402, 583
BseLI	CCNNNNNNNGG	2 cut(s)	69, 375
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	4 cut(s)	62, 191, 368, 723
BsiHKCI	CYCGRG	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	69, 375
BsmAI	GTCTC	1 cut(s)	784
BsnI	GGCC	4 cut(s)	62, 191, 368, 723
Bso31I	GGTCTC	1 cut(s)	784
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	5 cut(s)	129, 256, 445, 649, 793
BspACI	CCGC	3 cut(s)	340, 506, 724
BspANI	GGCC	4 cut(s)	62, 191, 368, 723
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	4 cut(s)	124, 137, 264, 657
BspTNI	GGTCTC	1 cut(s)	784
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	5 cut(s)	129, 256, 445, 649, 793
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	46, 802
Bst6I	CTCTTC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	114, 510
BstDEI	CTNAG	2 cut(s)	292, 754
BstF5I	GGATG	4 cut(s)	88, 161, 402, 583
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	5 cut(s)	132, 259, 448, 652, 796
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	5 cut(s)	129, 256, 445, 649, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 566
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	774
BstSNI	TACGTA	1 cut(s)	397
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	2 cut(s)	415, 635
BstX2I	RGATCY	4 cut(s)	129, 256, 445, 649
BstYI	RGATCY	4 cut(s)	129, 256, 445, 649
BsuRI	GGCC	4 cut(s)	62, 191, 368, 723
BtsCI	GGATG	4 cut(s)	88, 161, 402, 583
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	42, 282
Cac8I	GCNNGC	2 cut(s)	114, 510
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	599
CspCI	CAANNNNNGTGG	4 cut(s)	39, 74, 521, 556
CviAII	CATG	1 cut(s)	168
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	2 cut(s)	292, 754
DpnI	GATC	5 cut(s)	131, 258, 447, 651, 795
DpnII	GATC	5 cut(s)	129, 256, 445, 649, 793
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco105I	TACGTA	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	774
EcoT22I	ATGCAT	1 cut(s)	669
FaeI	CATG	1 cut(s)	171
FatI	CATG	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	341, 724, 747
FokI	GGATG	4 cut(s)	75, 168, 389, 570
Fsp4HI	GCNGC	3 cut(s)	341, 724, 747
FspBI	CTAG	2 cut(s)	93, 713
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	3 cut(s)	341, 724, 747
HaeIII	GGCC	4 cut(s)	62, 191, 368, 723
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	76, 464
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	4 cut(s)	256, 321, 627, 806
Hpy188III	TCNNGA	2 cut(s)	260, 443
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	94, 176, 196
HpyCH4III	ACNGT	2 cut(s)	46, 802
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	3 cut(s)	224, 617, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 566
HpyF3I	CTNAG	2 cut(s)	292, 754
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	129, 256, 445, 649, 793
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	76, 458, 575, 581, 600, 761, 788
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	93, 713
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	40, 433
MalI	GATC	5 cut(s)	131, 258, 447, 651, 795
MboI	GATC	5 cut(s)	129, 256, 445, 649, 793
MboII	GAAGA	9 cut(s)	75, 85, 187, 415, 440, 535, 601, 640, 644
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	4 cut(s)	129, 256, 445, 649
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	7 cut(s)	23, 303, 355, 429, 468, 480, 642
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	8 cut(s)	181, 340, 358, 379, 454, 580, 617, 713
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	669
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	3 cut(s)	483, 684, 735
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	776
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	340, 566
NdeII	GATC	5 cut(s)	129, 256, 445, 649, 793
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	40, 433
NsiI	ATGCAT	1 cut(s)	669
PaeR7I	CTCGAG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	342, 725, 748
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	311
PsrI	GAACNNNNNNTAC	2 cut(s)	371, 403
PsuI	RGATCY	4 cut(s)	129, 256, 445, 649
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	483, 684, 735
SatI	GCNGC	3 cut(s)	341, 724, 747
Sau3AI	GATC	5 cut(s)	129, 256, 445, 649, 793
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	776
SetI	ASST	7 cut(s)	15, 118, 293, 330, 336, 351, 399
SfaNI	GCATC	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SnaBI	TACGTA	1 cut(s)	397
Sse9I	AATT	7 cut(s)	23, 303, 355, 429, 468, 480, 642
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	340, 506, 724
SspMI	CTAG	2 cut(s)	93, 713
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	2 cut(s)	46, 802
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	312
TasI	AATT	7 cut(s)	23, 303, 355, 429, 468, 480, 642
TauI	GCSGC	2 cut(s)	343, 726
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	3 cut(s)	483, 684, 735
Tru9I	TTAA	3 cut(s)	483, 684, 735
TscAI	CASTG	2 cut(s)	49, 289
TseFI	GTSAC	2 cut(s)	40, 433
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	40, 433
TspDTI	ATGAA	5 cut(s)	156, 199, 215, 257, 536
TspGWI	ACGGA	2 cut(s)	662, 804
TspRI	CASTG	2 cut(s)	49, 289
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	355
XhoI	CTCGAG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	93, 713
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.