Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Reverse (-)

44631771 .. 44633030

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTGGCAAAGTTGAGGTTTCCCAGGTTGATGAGGACTAGAAGGAGGAAGCAGAAAGCAGTGGTTGGAATTTTTGCTTTTGAAGTTGCAAGTGTGATGTCTAAGCTGGTCCATCTATGGGCATTCCTGAGTTCTAAACAAGTTGATAGGCTCAGAAAAAAGATCTCAGATTCGGTGGGGATAAAAAAGCTTGTGTCACATGATGATGATTTCATTCGAGGTTTAATACCCGGTGAATTGTTTGAGAATATGGTCCCTTTGACAAAATATGTGGCCAGGCTTGGGAAGAATTATTGTTCTGATCCTAGTTTGAAGGATTTTGAGCATGCTGTTAGTGATTGGATCAACAATGGTGTTGACCCTTTTGGATGGGAACTTCCATGGGAGAAGATGGAAAAGAAAGCCAACAAGATGGAGAGGTTCATTTTAATAAATGCAAATTTGTATGACGGGATGAAACTTCTTTCGGATCTTGAACATACTTTGAACGACATCACTGCCACCTTGGATGGTCCAATTTTGCTTGAGTTTCAGAACAAGGTAGAGCTGAAGCGGCTTGAAGTGGAGAATTTGAAAGAGGAGTCTTTGTGGAACAGGACTTACGATTACGTAGGTATCCTTTTGGCAAGATCTGTCTTCACAATTTTCAGTTGGATCAAGTCTGTTTTTGGAGTTCCTCAACTGATGTCAGATGCAGAAACCAAAGATTCTGATCACATTAGTCCTAGTCCATCAATTTTCAGCAAGTACAAGCTGTTGGATGCTCCACCCGACACACTCGGTGCTGCTGCCTTAGCACTGCACTATGCAAATATTGTTATCAAAATTGAAAGTTATGTAAGATTTCCTCTCTTTTTATATTGTGGCAGACATAACCTGTACAGTATGTTGCCTGCAAATATGAGAGCTGAGCTAAGTGAAAGGCTGCCCTCCATCAAGAGCTCGACTTCATCAGTTCGCGATCTTGCAGCAGAGCGGAAGGTGGCAATGGCGGAAATATTAGAATGGTTAACACCACTTGCTCATAATACGAAGAAATGGCAGTCCAAGAGGAACTTTCAACAGAAAGCCTCTGTTTCCAGGAGCCATGTGCTTCTAGTACAAACCCTCTACTTTGCAAATCAACAGAAGACACAAGCAGCAATTATGGAACTTCTTGTTAGTTTGCAGTATATCTACCAAGCTGATCTAGAAGCTTTCCGAGAGAATGACCGCCGAAGGCGTGAAAGAAAAGCAGCCTCCCTGGAAGACCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

419

Amino Acids

48.29

Weight (kDa)

9.3

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	24 - 77	9.5e-21	Domain of unknown function (DUF3475)
DUF668	PF05003	259 - 346	5.3e-23	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	976
AccII	CGCG	1 cut(s)	960
AciI	CCGC	4 cut(s)	553, 976, 992, 1213
AclWI	GGATC	4 cut(s)	296, 350, 477, 662
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	3 cut(s)	69, 439, 568
AcuI	CTGAAG	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	3 cut(s)	749, 881, 1101
AfiI	CCNNNNNNNGG	2 cut(s)	118, 282
AgsI	TTSAA	8 cut(s)	83, 313, 476, 487, 560, 574, 830, 1061
AjnI	CCWGG	4 cut(s)	23, 275, 1079, 1242
AluBI	AGCT	9 cut(s)	106, 190, 547, 754, 908, 913, 942, 1184, 1196
AluI	AGCT	9 cut(s)	106, 190, 547, 754, 908, 913, 942, 1184, 1196
Alw21I	GWGCWC	1 cut(s)	944
AlwI	GGATC	4 cut(s)	296, 350, 477, 662
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	6 cut(s)	785, 788, 925, 968, 1139, 1235
ApoI	RAATTY	3 cut(s)	69, 439, 568
AspS9I	GGNCC	3 cut(s)	109, 253, 512
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	109, 253, 512
BaeI	ACNNNNGTAYC	2 cut(s)	598, 631
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	944
BbsI	GAAGAC	3 cut(s)	628, 1136, 1254
Bbv12I	GWGCWC	1 cut(s)	944
BbvI	GCAGC	6 cut(s)	772, 775, 912, 980, 1151, 1247
BccI	CCATC	7 cut(s)	120, 363, 385, 406, 503, 739, 941
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	4 cut(s)	25, 277, 1081, 1244
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	231
BfaI	CTAG	5 cut(s)	39, 306, 726, 1097, 1190
BfuI	GTATCC	1 cut(s)	626
BglII	AGATCT	2 cut(s)	162, 629
BisI	GCNGC	7 cut(s)	554, 786, 789, 926, 969, 1140, 1236
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	7 cut(s)	555, 787, 790, 927, 970, 1141, 1237
Bme1390I	CCNGG	5 cut(s)	25, 231, 277, 1081, 1244
Bme18I	GGWCC	3 cut(s)	109, 253, 512
BmgT120I	GGNCC	3 cut(s)	109, 253, 512
BmiI	GGNNCC	2 cut(s)	255, 1085
BmrFI	CCNGG	5 cut(s)	25, 231, 277, 1081, 1244
BmsI	GCATC	2 cut(s)	682, 751
BpiI	GAAGAC	3 cut(s)	628, 1136, 1254
Bpu10I	CCTNAGC	1 cut(s)	793
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	4 cut(s)	23, 380, 504, 1242
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 282
Bse3DI	GCAATG	1 cut(s)	993
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	4 cut(s)	25, 277, 1081, 1244
BseDI	CCNNGG	4 cut(s)	23, 380, 504, 1242
BseGI	GGATG	4 cut(s)	374, 459, 514, 766
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	2 cut(s)	118, 282
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	4 cut(s)	119, 166, 180, 900
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	6 cut(s)	772, 775, 912, 980, 1151, 1247
BsgI	GTGCAG	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	944
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	118, 282
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	944
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
Bsp1720I	GCTNAGC	1 cut(s)	909
Bsp19I	CCATGG	1 cut(s)	380
Bsp68I	TCGCGA	1 cut(s)	960
BspACI	CCGC	4 cut(s)	553, 976, 992, 1213
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	4 cut(s)	120, 165, 179, 901
BspFNI	CGCG	1 cut(s)	960
BspLI	GGNNCC	2 cut(s)	255, 1085
BspPI	GGATC	4 cut(s)	296, 350, 477, 662
BsrBI	CCGCTC	1 cut(s)	976
BsrDI	GCAATG	1 cut(s)	993
BsrGI	TGTACA	1 cut(s)	879
BssECI	CCNNGG	4 cut(s)	23, 380, 504, 1242
BssMI	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
BssT1I	CCWWGG	2 cut(s)	380, 504
Bst2UI	CCWGG	4 cut(s)	25, 277, 1081, 1244
Bst4CI	ACNGT	1 cut(s)	884
BstAUI	TGTACA	1 cut(s)	879
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	327, 894
BstDEI	CTNAG	7 cut(s)	102, 128, 152, 166, 793, 909, 914
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	4 cut(s)	374, 459, 514, 766
BstFNI	CGCG	1 cut(s)	960
BstKTI	GATC	9 cut(s)	165, 304, 345, 472, 632, 657, 715, 964, 1189
BstMBI	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 794
BstNI	CCWGG	4 cut(s)	25, 277, 1081, 1244
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	5 cut(s)	23, 229, 275, 1079, 1242
BstSNI	TACGTA	1 cut(s)	610
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	6 cut(s)	772, 775, 912, 980, 1151, 1247
BstV2I	GAAGAC	3 cut(s)	628, 1136, 1254
BstX2I	RGATCY	3 cut(s)	162, 469, 629
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	3 cut(s)	162, 469, 629
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	374, 459, 514, 766
BtsI	GCAGTG	3 cut(s)	66, 495, 797
BtsIMutI	CAGTG	3 cut(s)	66, 495, 797
BtuMI	TCGCGA	1 cut(s)	960
Cac8I	GCNNGC	2 cut(s)	327, 894
Cfr13I	GGNCC	3 cut(s)	109, 253, 512
Csp6I	GTAC	3 cut(s)	748, 880, 1100
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	4 cut(s)	200, 326, 381, 1088
CviQI	GTAC	3 cut(s)	748, 880, 1100
DdeI	CTNAG	7 cut(s)	102, 128, 152, 166, 793, 909, 914
DpnI	GATC	9 cut(s)	164, 303, 344, 471, 631, 656, 714, 963, 1188
DpnII	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
DraIII	CACNNNGTG	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	1007
Ecl136II	GAGCTC	1 cut(s)	942
Eco105I	TACGTA	1 cut(s)	610
Eco130I	CCWWGG	2 cut(s)	380, 504
Eco24I	GRGCYC	1 cut(s)	944
Eco47I	GGWCC	3 cut(s)	109, 253, 512
Eco53kI	GAGCTC	1 cut(s)	942
Eco57I	CTGAAG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	942
EcoRII	CCWGG	4 cut(s)	23, 275, 1079, 1242
EcoT14I	CCWWGG	2 cut(s)	380, 504
EcoT38I	GRGCYC	1 cut(s)	944
ErhI	CCWWGG	2 cut(s)	380, 504
FaeI	CATG	4 cut(s)	203, 329, 384, 1091
FalI	AAGNNNNNCTT	2 cut(s)	1040, 1072
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	199, 325, 380, 1087
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	7 cut(s)	554, 786, 789, 926, 969, 1140, 1236
FokI	GGATG	4 cut(s)	381, 466, 521, 773
FriOI	GRGCYC	1 cut(s)	944
Fsp4HI	GCNGC	7 cut(s)	554, 786, 789, 926, 969, 1140, 1236
FspBI	CTAG	5 cut(s)	39, 306, 726, 1097, 1190
GluI	GCNGC	7 cut(s)	554, 786, 789, 926, 969, 1140, 1236
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	4 cut(s)	203, 329, 384, 1091
HincII	GTYRAC	2 cut(s)	358, 1011
HindII	GTYRAC	2 cut(s)	358, 1011
HindIII	AAGCTT	2 cut(s)	188, 1194
HinfI	GANTC	3 cut(s)	170, 581, 707
HpaI	GTTAAC	1 cut(s)	1011
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	358, 1011
Hpy188I	TCNGA	8 cut(s)	155, 169, 301, 469, 534, 691, 712, 1202
Hpy188III	TCNNGA	5 cut(s)	127, 473, 937, 959, 1190
Hpy8I	GTNNAC	2 cut(s)	358, 1011
HpyAV	CCTTC	4 cut(s)	36, 307, 973, 1212
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	9 cut(s)	89, 437, 695, 802, 809, 896, 968, 1118, 1168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 794
HpyF3I	CTNAG	7 cut(s)	102, 128, 152, 166, 793, 909, 914
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	203, 329, 384, 1091
Ksp22I	TGATCA	1 cut(s)	712
KspAI	GTTAAC	1 cut(s)	1011
Kzo9I	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
LmnI	GCTCC	2 cut(s)	769, 1083
Lsp1109I	GCAGC	6 cut(s)	772, 775, 912, 980, 1151, 1247
LweI	GCATC	2 cut(s)	682, 751
MaeI	CTAG	5 cut(s)	39, 306, 726, 1097, 1190
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	9 cut(s)	164, 303, 344, 471, 631, 656, 714, 963, 1188
MbiI	CCGCTC	1 cut(s)	976
MboI	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
MboII	GAAGA	6 cut(s)	298, 400, 628, 1045, 1141, 1259
MflI	RGATCY	3 cut(s)	162, 469, 629
MhlI	GDGCHC	1 cut(s)	944
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	3 cut(s)	46, 632, 738
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	224, 428, 1010
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	5 cut(s)	25, 231, 277, 1081, 1244
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	4 cut(s)	25, 277, 1081, 1244
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	2 cut(s)	553, 794
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
NlaIII	CATG	4 cut(s)	203, 329, 384, 1091
NlaIV	GGNNCC	2 cut(s)	255, 1085
NmuCI	GTSAC	1 cut(s)	195
NruI	TCGCGA	1 cut(s)	960
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	170, 707
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	7 cut(s)	555, 787, 790, 927, 970, 1141, 1237
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	944
Psp6I	CCWGG	4 cut(s)	23, 275, 1079, 1242
PspGI	CCWGG	4 cut(s)	23, 275, 1079, 1242
PspN4I	GGNNCC	2 cut(s)	255, 1085
PspPI	GGNCC	3 cut(s)	109, 253, 512
PsrI	GAACNNNNNNTAC	2 cut(s)	584, 616
PsuI	RGATCY	3 cut(s)	162, 469, 629
RruI	TCGCGA	1 cut(s)	960
RsaI	GTAC	3 cut(s)	749, 881, 1101
RsaNI	GTAC	3 cut(s)	748, 880, 1100
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	944
SaqAI	TTAA	3 cut(s)	224, 428, 1010
SatI	GCNGC	7 cut(s)	554, 786, 789, 926, 969, 1140, 1236
Sau3AI	GATC	9 cut(s)	162, 301, 342, 469, 629, 654, 712, 961, 1186
Sau96I	GGNCC	3 cut(s)	109, 253, 512
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	5 cut(s)	25, 231, 277, 1081, 1244
SduI	GDGCHC	1 cut(s)	944
SfaNI	GCATC	2 cut(s)	682, 751
SinI	GGWCC	3 cut(s)	109, 253, 512
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SnaBI	TACGTA	1 cut(s)	610
SphI	GCATGC	1 cut(s)	329
SsiI	CCGC	4 cut(s)	553, 976, 992, 1213
SspI	AATATT	2 cut(s)	814, 999
SspMI	CTAG	5 cut(s)	39, 306, 726, 1097, 1190
SstI	GAGCTC	1 cut(s)	944
StyD4I	CCNGG	5 cut(s)	23, 229, 275, 1079, 1242
StyI	CCWWGG	2 cut(s)	380, 504
TaaI	ACNGT	1 cut(s)	884
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	2 cut(s)	217, 944
TatI	WGTACW	3 cut(s)	747, 879, 1099
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	170, 707
Tru1I	TTAA	3 cut(s)	224, 428, 1010
Tru9I	TTAA	3 cut(s)	224, 428, 1010
TscAI	CASTG	3 cut(s)	66, 502, 804
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	6 cut(s)	785, 788, 925, 968, 1139, 1235
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	4 cut(s)	202, 412, 470, 939
TspRI	CASTG	3 cut(s)	66, 502, 804
VpaK11BI	GGWCC	3 cut(s)	109, 253, 512
XapI	RAATTY	3 cut(s)	69, 439, 568
XbaI	TCTAGA	1 cut(s)	1189
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	5 cut(s)	39, 306, 726, 1097, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.