Rh1AG349200

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003956
Physical Location & Seq
Reverse (-)
58592595 .. 58594344
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG349200.1

Sequence Viewer

Length: 927 bp
ATGGTGGTAAAGTTTAGGTTTCCCAGGCTGTTGAGGACTAAAAGGGGGAAGCAGAAAGCAGTAGTTGGAATTTTTGCCTTTGAAGTTGCGAGTGTGATGTCTAAGCTGGTCCATCTATGGGCATCCCTGAATTCTAAACAAGTTCATAGGCTCAGAAAAAAGATCTCATATTCGGTGGGGATAAAAAAGCTTGTGTCACATGATGATGATTTCATTCGAGGTTTAATACCCGGTGAATTGTTTGAGAATATGGTCTCTTTGACAAAATATGTGGCCAGGCTTGGGAAGAATTATTGTTCTGATCCTAGTTTGAAGGATTTTGAGCATGCTGTTAGTGATTGGATCAACAATGGTGTTGACCCTTTTGGATGGGAACTTCCATGGGAGAAGAAGGAAAAGAAAGTCAACAAGATGGGGAGGTTCATTTCAATAAATGCAAATTTGTATGACGGGATGAAACTTCTTTCGGATCTTGAACATACTTTGAACGACATCTCTGCCACCTTGGATGGTCCAATTTTGCTTGAGTTTCAGAACAAGGTAGAGCTGAAGCGGCTTGAAGTGGAGAATTTGAAAGAGGAGTCTTTGCGGAACAGGACTTACGATTACGTAGGTATCCTTTTGGCAAGATCTGTCTTCACAATTTTCAGTTGGATCAAGTCTGTTTTTGGAGTTCCTCAACTGATGGCAGATGCAGAAACCAAAGATTCTGATCACATTACTCCTAGTCCATCAATTTTTAGCAAGTACAAGCTGTTGGATGCTCCACCCGACACACTCGGTGCTGCTGCCTTAGCACTGCACTATGCAAATATTGTTATCAAAATTGAAAGTTATTACATCTACCAAGCTGATCTAGAAGCTTTCCGAGAGAATGACCGCCGAAGGCGTGAAAGAAAAGCAGCCTTCCTGGGAGACCAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

308

Amino Acids

35.38

Weight (kDa)

9.2

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 24 - 77 1.7e-20 Domain of unknown function (DUF3475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 553, 589, 880
AclWI GGATC 4 cut(s) 296, 350, 477, 662
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 4 cut(s) 69, 130, 439, 568
AcuI CTGAAG 1 cut(s) 569
AdeI CACNNNGTG 1 cut(s) 782
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 2 cut(s) 118, 282
AgsI TTSAA 8 cut(s) 83, 313, 429, 476, 487, 560, 574, 830
AjnI CCWGG 3 cut(s) 23, 275, 909
AluBI AGCT 6 cut(s) 106, 190, 547, 754, 851, 863
AluI AGCT 6 cut(s) 106, 190, 547, 754, 851, 863
Alw26I GTCTC 2 cut(s) 259, 909
AlwI GGATC 4 cut(s) 296, 350, 477, 662
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 785, 788, 902
ApoI RAATTY 4 cut(s) 69, 130, 439, 568
AspS9I GGNCC 2 cut(s) 109, 512
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 109, 512
BaeI ACNNNNGTAYC 2 cut(s) 598, 631
BalI TGGCCA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 628
BbvI GCAGC 3 cut(s) 772, 775, 914
BccI CCATC 6 cut(s) 120, 363, 406, 503, 679, 739
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 3 cut(s) 25, 277, 911
BciVI GTATCC 1 cut(s) 626
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 259, 909
BfaI CTAG 3 cut(s) 306, 726, 857
BfuI GTATCC 1 cut(s) 626
BglII AGATCT 2 cut(s) 162, 629
BisI GCNGC 4 cut(s) 554, 786, 789, 903
BlsI GCNGC 4 cut(s) 555, 787, 790, 904
Bme1390I CCNGG 4 cut(s) 25, 231, 277, 911
Bme18I GGWCC 2 cut(s) 109, 512
BmgT120I GGNCC 2 cut(s) 109, 512
BmrFI CCNGG 4 cut(s) 25, 231, 277, 911
BmsI GCATC 3 cut(s) 131, 682, 751
BpiI GAAGAC 1 cut(s) 628
Bpu10I CCTNAGC 1 cut(s) 793
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 2 cut(s) 259, 909
BsaJI CCNNGG 4 cut(s) 23, 380, 504, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 282
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 3 cut(s) 25, 277, 911
BseDI CCNNGG 4 cut(s) 23, 380, 504, 910
BseGI GGATG 5 cut(s) 122, 374, 459, 514, 766
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 2 cut(s) 118, 282
BseMII CTCAG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 3 cut(s) 772, 775, 914
BsgI GTGCAG 1 cut(s) 785
BshFI GGCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 118, 282
BsmAI GTCTC 2 cut(s) 259, 909
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 2 cut(s) 259, 909
Bsp143I GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
Bsp19I CCATGG 1 cut(s) 380
BspACI CCGC 3 cut(s) 553, 589, 880
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 165
BspPI GGATC 4 cut(s) 296, 350, 477, 662
BspTNI GGTCTC 2 cut(s) 259, 909
BssECI CCNNGG 4 cut(s) 23, 380, 504, 910
BssMI GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
BssT1I CCWWGG 2 cut(s) 380, 504
Bst2UI CCWGG 3 cut(s) 25, 277, 911
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 102, 152, 793
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 5 cut(s) 122, 374, 459, 514, 766
BstKTI GATC 8 cut(s) 165, 304, 345, 472, 632, 657, 715, 856
BstMAI GTCTC 2 cut(s) 259, 909
BstMBI GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
BstMWI GCNNNNNNNGC 2 cut(s) 553, 794
BstNI CCWGG 3 cut(s) 25, 277, 911
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 4 cut(s) 23, 229, 275, 909
BstSNI TACGTA 1 cut(s) 610
BstV1I GCAGC 3 cut(s) 772, 775, 914
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 3 cut(s) 162, 469, 629
BstYI RGATCY 3 cut(s) 162, 469, 629
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 5 cut(s) 122, 374, 459, 514, 766
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 1 cut(s) 797
Cac8I GCNNGC 1 cut(s) 327
Cfr13I GGNCC 2 cut(s) 109, 512
Csp6I GTAC 1 cut(s) 748
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 3 cut(s) 200, 326, 381
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 3 cut(s) 102, 152, 793
DpnI GATC 8 cut(s) 164, 303, 344, 471, 631, 656, 714, 855
DpnII GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
DraIII CACNNNGTG 1 cut(s) 782
EaeI YGGCCR 1 cut(s) 273
Eco105I TACGTA 1 cut(s) 610
Eco130I CCWWGG 2 cut(s) 380, 504
Eco31I GGTCTC 2 cut(s) 259, 909
Eco47I GGWCC 2 cut(s) 109, 512
Eco57I CTGAAG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 23, 275, 909
EcoT14I CCWWGG 2 cut(s) 380, 504
ErhI CCWWGG 2 cut(s) 380, 504
FaeI CATG 3 cut(s) 203, 329, 384
FatI CATG 3 cut(s) 199, 325, 380
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 4 cut(s) 554, 786, 789, 903
FokI GGATG 5 cut(s) 109, 381, 466, 521, 773
Fsp4HI GCNGC 4 cut(s) 554, 786, 789, 903
FspBI CTAG 3 cut(s) 306, 726, 857
GluI GCNGC 4 cut(s) 554, 786, 789, 903
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 203, 329, 384
HincII GTYRAC 2 cut(s) 358, 406
HindII GTYRAC 2 cut(s) 358, 406
HindIII AAGCTT 2 cut(s) 188, 861
HinfI GANTC 2 cut(s) 581, 707
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 358, 406
Hpy188I TCNGA 6 cut(s) 155, 301, 469, 534, 712, 869
Hpy188III TCNNGA 2 cut(s) 473, 857
Hpy8I GTNNAC 2 cut(s) 358, 406
HpyAV CCTTC 4 cut(s) 307, 385, 879, 916
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 4 cut(s) 437, 695, 802, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 553, 794
HpyF3I CTNAG 3 cut(s) 102, 152, 793
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 3 cut(s) 203, 329, 384
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 3 cut(s) 772, 775, 914
LweI GCATC 3 cut(s) 131, 682, 751
MaeI CTAG 3 cut(s) 306, 726, 857
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 1 cut(s) 195
MalI GATC 8 cut(s) 164, 303, 344, 471, 631, 656, 714, 855
MboI GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
MboII GAAGA 3 cut(s) 298, 400, 628
MflI RGATCY 3 cut(s) 162, 469, 629
MlsI TGGCCA 1 cut(s) 275
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 3 cut(s) 46, 632, 738
MnlI CCTC 5 cut(s) 27, 212, 411, 571, 687
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 4 cut(s) 25, 231, 277, 911
MvaI CCWGG 3 cut(s) 25, 277, 911
MwoI GCNNNNNNNGC 2 cut(s) 553, 794
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 380
NdeII GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
NlaIII CATG 3 cut(s) 203, 329, 384
NmuCI GTSAC 1 cut(s) 195
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 4 cut(s) 555, 787, 790, 904
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Ppu21I YACGTR 1 cut(s) 610
Psp6I CCWGG 3 cut(s) 23, 275, 909
PspGI CCWGG 3 cut(s) 23, 275, 909
PspPI GGNCC 2 cut(s) 109, 512
PsrI GAACNNNNNNTAC 2 cut(s) 584, 616
PsuI RGATCY 3 cut(s) 162, 469, 629
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 4 cut(s) 554, 786, 789, 903
Sau3AI GATC 8 cut(s) 162, 301, 342, 469, 629, 654, 712, 853
Sau96I GGNCC 2 cut(s) 109, 512
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 4 cut(s) 25, 231, 277, 911
SfaNI GCATC 3 cut(s) 131, 682, 751
SinI GGWCC 2 cut(s) 109, 512
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SnaBI TACGTA 1 cut(s) 610
SphI GCATGC 1 cut(s) 329
SsiI CCGC 3 cut(s) 553, 589, 880
SspI AATATT 1 cut(s) 814
SspMI CTAG 3 cut(s) 306, 726, 857
StyD4I CCNGG 4 cut(s) 23, 229, 275, 909
StyI CCWWGG 2 cut(s) 380, 504
TaiI ACGT 1 cut(s) 612
TaqI TCGA 1 cut(s) 217
TatI WGTACW 1 cut(s) 747
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 3 cut(s) 785, 788, 902
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 4 cut(s) 134, 202, 412, 470
TspRI CASTG 1 cut(s) 804
VpaK11BI GGWCC 2 cut(s) 109, 512
XapI RAATTY 4 cut(s) 69, 130, 439, 568
XbaI TCTAGA 1 cut(s) 856
XceI RCATGY 1 cut(s) 329
XspI CTAG 3 cut(s) 306, 726, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.