Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Reverse (-)

18115179 .. 18116397

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGTGCCGAAGTTAAGGTTATCTCCTTGTCTGTCACGGACTAAAAGGAAGCTTCAGGCTGGTCCTAAGAAAGCAGTGGTTGGTATTTTTGCCTTTGAAGTTGCAAGTGTGATGTCTAATCTGGTCAATATATGGAGACTTCTCAGTAATGAAAAAGTTGATCATACGCTCAGAAAATATTTCTCACGTTCGGTGGGGATAAAAAAGCTTGTGTCACATGATGATGATTTCATTCGAGGTTTAGTATCTGGTGAATTGTTTGAGAATATGATCCCTATAGAAAAATTTGTGGCTAGGCTTGAGAAGAATCATTGTTCTAATCCTAGGTTGAAGGATTTTGAGCATGCTGTTAGTAATTGGATCAACAATGGTATTGACCCTTTTGTATGGGAACTTCCATGGGAGGAGATGGAAAAGGAAGCCAAAAAGATGGAGAGTGCCACCTTGGATGATCCAATTTTGCTTGAGTTTCAGAACAAGGTAGAGCTGAAGCGGCTCGAGGTGGAGAATTTGAAAGAGGGGTCTTTGTGGAACATAACTTTCAATCACATAGGTATCCTTTTGGCAAGATCTGTCTTCACAATTTTCAATTGTATCAAGTCTGTTTATGGAGTTCCTCATCAACTCATGGCGGATGCAGATCACACTAGTCCTAGTCCATCAATTTTCAGCAAGTACAAGCTGTTGGATGCTCCTCCCGACACGCTCGGTGCTGCTGCCTTAGCACTCCACTATGCAAATATTGTCATCAAAATTGAAAGTTTAGTAAGACATCCCATCTCTCTTTATAGTAGCAGACGTGACCTGTACAGAATGTTGCCTGCAAATATGAGAGCTGAGCTAAGTGAAAGGCTGCCCTCCATCCAGAGCTTGACTTATTCGTCTGTTGAAGATGTTGCAGCAGAGAAGAAGGTGGCAATGGCTGAAATAATTGAATGGTTAGCACCACTTGCTCATAATACGAAGAAATTGCACTCGAAGAGGAACTTTAAACAACAGAAGGCCTGTGTTTCCAGGAGCCATGTGCTTCTGGTACAAACTCTATACTTTGCAAATCAACAGAAGACAGAAGCAACTATTATGGAAATTATTGTTGGTTTGCAGTACACTGCTTGCAAGCTCAGCTTAAAGCTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

380

Amino Acids

43.21

Weight (kDa)

9.21

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	29 - 85	6.4e-15	Domain of unknown function (DUF3475)
DUF668	PF05003	235 - 323	1.3e-23	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	493, 632
AclWI	GGATC	3 cut(s)	265, 368, 446
AcsI	RAATTY	2 cut(s)	284, 508
AcuI	CTGAAG	2 cut(s)	38, 509
AfaI	GTAC	4 cut(s)	677, 809, 1035, 1106
AgsI	TTSAA	8 cut(s)	98, 331, 514, 544, 589, 758, 890, 935
AhlI	ACTAGT	1 cut(s)	647
AjiI	CACGTC	1 cut(s)	800
AjnI	CCWGG	1 cut(s)	1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	1077, 1109
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	265, 368, 446
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	1002
ApeKI	GCWGC	4 cut(s)	713, 716, 853, 899
ApoI	RAATTY	2 cut(s)	284, 508
AspA2I	CCTAGG	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	323
BaeI	ACNNNNGTAYC	2 cut(s)	538, 571
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	2 cut(s)	568, 1070
BbvI	GCAGC	4 cut(s)	700, 703, 840, 911
BccI	CCATC	5 cut(s)	403, 424, 667, 785, 869
BcgI	CGANNNNNNTGC	2 cut(s)	952, 986
BciT130I	CCWGG	1 cut(s)	1015
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	5 cut(s)	294, 324, 648, 654, 1138
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	5 cut(s)	494, 714, 717, 854, 900
BlnI	CCTAGG	1 cut(s)	323
BlpI	GCTNAGC	2 cut(s)	837, 1121
BlsI	GCNGC	5 cut(s)	495, 715, 718, 855, 901
Bme1390I	CCNGG	1 cut(s)	1015
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	6, 1019
BmrFI	CCNGG	1 cut(s)	1015
BmsI	GCATC	2 cut(s)	625, 679
BpiI	GAAGAC	2 cut(s)	568, 1070
Bpu10I	CCTNAGC	1 cut(s)	721
Bpu1102I	GCTNAGC	2 cut(s)	837, 1121
BpuEI	CTTGAG	2 cut(s)	320, 485
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	3 cut(s)	323, 398, 444
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	1015
BseDI	CCNNGG	3 cut(s)	323, 398, 444
BseGI	GGATG	5 cut(s)	454, 640, 694, 772, 861
BseJI	GATNNNNATC	1 cut(s)	639
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	4 cut(s)	157, 184, 828, 1135
BseRI	GAGGAG	2 cut(s)	419, 684
BseXI	GCAGC	4 cut(s)	700, 703, 840, 911
BshFI	GGCC	1 cut(s)	1004
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	1004
BsoBI	CYCGRG	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	807
Bsp143I	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
Bsp1720I	GCTNAGC	2 cut(s)	837, 1121
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	2 cut(s)	493, 632
BspANI	GGCC	1 cut(s)	1004
BspCNI	CTCAG	4 cut(s)	156, 183, 829, 1134
BspLI	GGNNCC	2 cut(s)	6, 1019
BspPI	GGATC	3 cut(s)	265, 368, 446
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	807
BssECI	CCNNGG	3 cut(s)	323, 398, 444
BssMI	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
BssT1I	CCWWGG	3 cut(s)	323, 398, 444
Bst2UI	CCWGG	1 cut(s)	1015
Bst6I	CTCTTC	1 cut(s)	974
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstAUI	TGTACA	1 cut(s)	807
BstC8I	GCNNGC	4 cut(s)	345, 822, 1114, 1118
BstDEI	CTNAG	7 cut(s)	66, 143, 170, 721, 837, 842, 1121
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	5 cut(s)	454, 640, 694, 772, 861
BstKTI	GATC	6 cut(s)	163, 273, 363, 454, 572, 643
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	493, 722, 950, 1122
BstNI	CCWGG	1 cut(s)	1015
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	1013
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	700, 703, 840, 911
BstV2I	GAAGAC	2 cut(s)	568, 1070
BstX2I	RGATCY	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	1004
BtgI	CCRYGG	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	800
BtsCI	GGATG	5 cut(s)	454, 640, 694, 772, 861
BtsI	GCAGTG	2 cut(s)	81, 1107
BtsIMutI	CAGTG	2 cut(s)	81, 1107
Cac8I	GCNNGC	4 cut(s)	345, 822, 1114, 1118
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	4 cut(s)	676, 808, 1034, 1105
CviAII	CATG	5 cut(s)	218, 344, 399, 628, 1022
CviQI	GTAC	4 cut(s)	676, 808, 1034, 1105
DdeI	CTNAG	7 cut(s)	66, 143, 170, 721, 837, 842, 1121
DpnI	GATC	6 cut(s)	162, 272, 362, 453, 571, 642
DpnII	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
DraI	TTTAAA	1 cut(s)	991
DrdI	GACNNNNNNGTC	1 cut(s)	880
DseDI	GACNNNNNNGTC	1 cut(s)	880
Eam1104I	CTCTTC	1 cut(s)	974
EarI	CTCTTC	1 cut(s)	974
EciI	GGCGGA	1 cut(s)	647
Eco130I	CCWWGG	3 cut(s)	323, 398, 444
Eco147I	AGGCCT	1 cut(s)	1004
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	38, 509
Eco88I	CYCGRG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	1013
EcoT14I	CCWWGG	3 cut(s)	323, 398, 444
ErhI	CCWWGG	3 cut(s)	323, 398, 444
FaeI	CATG	5 cut(s)	221, 347, 402, 631, 1025
FalI	AAGNNNNNCTT	3 cut(s)	971, 1003, 1109
FatI	CATG	5 cut(s)	217, 343, 398, 627, 1021
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	494, 714, 717, 854, 900
FokI	GGATG	5 cut(s)	461, 647, 701, 759, 848
Fsp4HI	GCNGC	5 cut(s)	494, 714, 717, 854, 900
FspBI	CTAG	5 cut(s)	294, 324, 648, 654, 1138
GluI	GCNGC	5 cut(s)	494, 714, 717, 854, 900
HaeIII	GGCC	1 cut(s)	1004
Hin1II	CATG	5 cut(s)	221, 347, 402, 631, 1025
HindIII	AAGCTT	2 cut(s)	50, 206
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	1107
Hpy188I	TCNGA	2 cut(s)	173, 474
Hpy188III	TCNNGA	2 cut(s)	698, 865
Hpy8I	GTNNAC	1 cut(s)	1107
HpyAV	CCTTC	3 cut(s)	325, 904, 994
HpyCH4IV	ACGT	2 cut(s)	187, 799
HpyCH4V	TGCA	9 cut(s)	104, 638, 737, 824, 899, 973, 1052, 1102, 1116
HpyF10VI	GCNNNNNNNGC	4 cut(s)	493, 722, 950, 1122
HpyF3I	CTNAG	7 cut(s)	66, 143, 170, 721, 837, 842, 1121
HpySE526I	ACGT	2 cut(s)	187, 799
Hsp92II	CATG	5 cut(s)	221, 347, 402, 631, 1025
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
LmnI	GCTCC	2 cut(s)	697, 1017
Lsp1109I	GCAGC	4 cut(s)	700, 703, 840, 911
LweI	GCATC	2 cut(s)	625, 679
MaeI	CTAG	5 cut(s)	294, 324, 648, 654, 1138
MaeII	ACGT	2 cut(s)	187, 799
MaeIII	GTNAC	3 cut(s)	33, 213, 800
MalI	GATC	6 cut(s)	162, 272, 362, 453, 571, 642
MboI	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
MboII	GAAGA	7 cut(s)	316, 568, 902, 919, 976, 991, 1075
MfeI	CAATTG	1 cut(s)	589
MflI	RGATCY	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	8 cut(s)	230, 397, 493, 511, 627, 705, 868, 975
MseI	TTAA	3 cut(s)	14, 990, 1127
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	1015
MunI	CAATTG	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	1015
MwoI	GCNNNNNNNGC	4 cut(s)	493, 722, 950, 1122
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
NlaIII	CATG	5 cut(s)	221, 347, 402, 631, 1025
NlaIV	GGNNCC	2 cut(s)	6, 1019
NmuCI	GTSAC	3 cut(s)	33, 213, 800
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	1004
PfeI	GAWTC	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	1013
PkrI	GCNGC	5 cut(s)	495, 715, 718, 855, 901
Psp6I	CCWGG	1 cut(s)	1013
PspGI	CCWGG	1 cut(s)	1013
PspN4I	GGNNCC	2 cut(s)	6, 1019
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	4 cut(s)	677, 809, 1035, 1106
RsaNI	GTAC	4 cut(s)	676, 808, 1034, 1105
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	14, 990, 1127
SatI	GCNGC	5 cut(s)	494, 714, 717, 854, 900
Sau3AI	GATC	6 cut(s)	160, 270, 360, 451, 569, 640
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	1015
SfaNI	GCATC	2 cut(s)	625, 679
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	3 cut(s)	299, 464, 497
SmoI	CTYRAG	3 cut(s)	299, 464, 497
SpeI	ACTAGT	1 cut(s)	647
SphI	GCATGC	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	1004
SsiI	CCGC	2 cut(s)	493, 632
SspI	AATATT	2 cut(s)	179, 742
SspMI	CTAG	5 cut(s)	294, 324, 648, 654, 1138
StuI	AGGCCT	1 cut(s)	1004
StyD4I	CCNGG	1 cut(s)	1013
StyI	CCWWGG	3 cut(s)	323, 398, 444
TaiI	ACGT	2 cut(s)	190, 802
TaqI	TCGA	3 cut(s)	235, 498, 977
TatI	WGTACW	3 cut(s)	675, 807, 1104
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	3 cut(s)	14, 990, 1127
Tru9I	TTAA	3 cut(s)	14, 990, 1127
TscAI	CASTG	2 cut(s)	81, 1114
TseFI	GTSAC	3 cut(s)	33, 213, 800
TseI	GCWGC	4 cut(s)	713, 716, 853, 899
Tsp45I	GTSAC	3 cut(s)	33, 213, 800
TspDTI	ATGAA	2 cut(s)	165, 220
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	81, 1114
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	284, 508
XceI	RCATGY	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	497
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	5 cut(s)	294, 324, 648, 654, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.