Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003956

Physical Location & Seq

Genomic Coordinates Reverse (-)

56744452 .. 56746653

Gene Structure 2202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG343000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGAAAGTTGCGGTTTCACAGGACTAAAAAGAAGAAGAATAAATTCTTTAAAAAAGAGAAGCAGCAGAAAGCAGTGATTGGAGTTTTGGCATTCGAAGTTGCAAGAGTCATGTGTAGGCTGCTCCATCTATGGACAACTCTGAGCGATGAACAAGTTAACAGGCTCAGACAATATATTTTAAATTCCGTGGGTATAGAAAAGCTTGTGTCAGATGACAATGAGTTCATACTAGGTTTAATATCCAGCGAATTGTTTGAGAATGTGGTCACTGTGGCAAAATATGTGGCCAGGCTCGGGAAGAATCATTCTTCTCATCCTAGTTTGAAGGCTTTTGAGCAAGCTATTAGTGATTGGATCCATAATGGTGTTGACCCTTATGGATGGCAACTTTCATGGGAGAAGATGGAAGGGGAGGCCAAGATGATGAAGGAGTTCATTTCAAAAAATGCAGATTTGTATGACAAGATGAAACTTCTTTCGGATCTTGAACATACTTTGAAAGACATCACTGCCACCTTAGATGGTCCAATTTTGCTTGAGTTTCAGAACAAGGTAGAGCTGAAGCGGCACGAGGTGGAGAATTTGAAAGAGGTCTCTCTGTGGAACACGACTTACGATTACGTAGGCATCCTTTTGGCAACATCTGTCTTCACAATTATCAGTAGGATCAAGCATGTTTTTGGATTGCCTAAACTTATAACAGATGCTGAAACCAAAGACTCTGATCACATTAGTCCTAGTCCATCAATCTTTAGCAAGCACAAGCTGTTGGATGCTCCCCCCGACACACTAGGTGCTGCCGCCTTAGCACTGCACTATGCAAATATTATTCTCAAAATTGAAACTTTAGTGTTATATCCTTCTAGGTGTCATCGGGTCGACAGAAATGACCTGTACAGTATGTTGCCTGGAAGTATCAGAGCTGAGCTAAATGAAAGGCTGCCCTGCATTGAGGGCTCGACTTTATCACTGCCCTGCATTGAAAGCACGACTTCAGCACTTCAAGATCTTCCAAAGTTGGAGGAGTCAATTCAGGCAACAATTAAAACAATAGAATGGGTATCACCGCTTGCTCATAATATGAAGAAATGGCAATCCAAGTGGAACATTCAACAGAAAGCCCAGAAAGCCTCTGTTTTCAGTCATCCTGTGCTTCTGGTGCAAACCCTTTACTATGCAAATCATCAGAAGACAGAAGCAACAATTACGGATCTTCTTGTTGGTATGCATTACACCTATAATCTTAAAAGACAAGTCAAGGCAAAATCTATGCTAGAGAGAGGCCGCAACTCGCTTAAAATAAAAGCAGCCAACTTAGAAGCCCAAGACGAAGCCCTGGTCTCCATTGACGGAGATCAAACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

456

Amino Acids

51.91

Weight (kDa)

8.82

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	29 - 84	1.4e-22	Domain of unknown function (DUF3475)
DUF668	PF05003	264 - 364	9.4e-20	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003956)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23120 FvH4_7g23140
rosa_chinensis	RchiOBHm_Chr1g0367491 RchiOBHm_Chr1g0367511 RchiOBHm_Chr1g0368371 RchiOBHm_Chr1g0368421
rosa_laevigata	RLG00000027210 RLG00000027215
rosa_multiflora	Rmu_sc0002709.1_g000014 Rmu_sc0002709.1_g000044 Rmu_sc0006908.1_g000025 Rmu_sc0006908.1_g000029
rosa_roxburghii	Rroxscaffold_2G00125250 Rroxscaffold_4G00288520 Rroxscaffold_4G00288600
rosa_rugosa	Rorug01G0341700 Rorug01G0341700
rosa_samantha	Rh1AG348200 Rh1AG348700 Rh1AG349200 Rh1BG311200 Rh1BG311400 Rh1BG312000 Rh1CG326500 Rh1CG326700 Rh1CG327100 Rh1DG343000 Rh1DG343200 Rh1DG343600
rosa_wichuraiana	Rw0G002420 Rw0G002440 Rw1G031000 Rw1G031030 Rw1G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	882
AciI	CCGC	5 cut(s)	13, 568, 804, 1070, 1288
AclWI	GGATC	5 cut(s)	352, 365, 492, 677, 1221
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	44, 184, 583
AcuI	CTGAAG	2 cut(s)	584, 981
AdeI	CACNNNGTG	2 cut(s)	577, 797
AfaI	GTAC	1 cut(s)	899
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	9 cut(s)	328, 444, 491, 502, 589, 845, 986, 1007, 1115
AjnI	CCWGG	3 cut(s)	290, 910, 1338
AluBI	AGCT	6 cut(s)	205, 344, 562, 769, 926, 931
AluI	AGCT	6 cut(s)	205, 344, 562, 769, 926, 931
Alw26I	GTCTC	2 cut(s)	601, 1348
AlwI	GGATC	5 cut(s)	352, 365, 492, 677, 1221
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	3 cut(s)	288, 417, 1285
ApeKI	GCWGC	5 cut(s)	64, 121, 800, 943, 1310
ApoI	RAATTY	3 cut(s)	44, 184, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	1326, 1358
Asp700I	GAANNNNTTC	2 cut(s)	44, 434
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	1059
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	962
BauI	CACGAG	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	643, 1199
BbvI	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
BccI	CCATC	5 cut(s)	135, 378, 400, 518, 754
BciT130I	CCWGG	3 cut(s)	292, 912, 1340
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	601, 1348
BfaI	CTAG	6 cut(s)	233, 321, 741, 794, 867, 1277
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
BlpI	GCTNAGC	1 cut(s)	927
BlsI	GCNGC	8 cut(s)	66, 123, 570, 802, 805, 945, 1289, 1312
Bme1390I	CCNGG	3 cut(s)	292, 912, 1340
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	292, 912, 1340
BmsI	GCATC	3 cut(s)	639, 697, 766
BpiI	GAAGAC	2 cut(s)	643, 1199
Bpu10I	CCTNAGC	1 cut(s)	808
Bpu1102I	GCTNAGC	1 cut(s)	927
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	625
BsaI	GGTCTC	2 cut(s)	601, 1348
BsaJI	CCNNGG	2 cut(s)	189, 1338
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	292, 912, 1340
BseDI	CCNNGG	2 cut(s)	189, 1338
BseGI	GGATG	5 cut(s)	316, 389, 630, 781, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	134, 181, 918
BseRI	GAGGAG	1 cut(s)	1040
BseXI	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
BsgI	GTGCAG	1 cut(s)	800
BshFI	GGCC	3 cut(s)	290, 419, 1287
BsiHKCI	CYCGRG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	601, 1348
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	290, 419, 1287
Bso31I	GGTCTC	2 cut(s)	601, 1348
BsoBI	CYCGRG	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	962
Bsp1407I	TGTACA	1 cut(s)	897
Bsp143I	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
Bsp1720I	GCTNAGC	1 cut(s)	927
BspACI	CCGC	5 cut(s)	13, 568, 804, 1070, 1288
BspANI	GGCC	3 cut(s)	290, 419, 1287
BspCNI	CTCAG	3 cut(s)	135, 180, 919
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	5 cut(s)	352, 365, 492, 677, 1221
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	2 cut(s)	601, 1348
BsrGI	TGTACA	1 cut(s)	897
BssECI	CCNNGG	2 cut(s)	189, 1338
BssMI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
BssSI	CACGAG	1 cut(s)	572
Bst2BI	CACGAG	1 cut(s)	572
Bst2UI	CCWGG	3 cut(s)	292, 912, 1340
Bst4CI	ACNGT	3 cut(s)	274, 902, 1366
BstAUI	TGTACA	1 cut(s)	897
BstBAI	YACGTR	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	342, 761, 1074
BstDEI	CTNAG	6 cut(s)	143, 167, 520, 808, 927, 1318
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	5 cut(s)	316, 389, 630, 781, 1147
BstKTI	GATC	7 cut(s)	360, 487, 672, 730, 1012, 1216, 1360
BstMAI	GTCTC	2 cut(s)	601, 1348
BstMBI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
BstMWI	GCNNNNNNNGC	6 cut(s)	568, 809, 957, 987, 1130, 1162
BstNI	CCWGG	3 cut(s)	292, 912, 1340
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	290, 910, 1338
BstSNI	TACGTA	1 cut(s)	625
BstV1I	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
BstV2I	GAAGAC	2 cut(s)	643, 1199
BstX2I	RGATCY	4 cut(s)	357, 484, 1009, 1213
BstYI	RGATCY	4 cut(s)	357, 484, 1009, 1213
BsuRI	GGCC	3 cut(s)	290, 419, 1287
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	5 cut(s)	316, 389, 630, 781, 1147
BtsI	GCAGTG	4 cut(s)	81, 510, 812, 971
BtsIMutI	CAGTG	5 cut(s)	81, 270, 510, 812, 971
Cac8I	GCNNGC	3 cut(s)	342, 761, 1074
CaiI	CAGNNNCTG	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	898
CspCI	CAANNNNNGTGG	4 cut(s)	267, 302, 1085, 1120
CviAII	CATG	3 cut(s)	112, 396, 677
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	6 cut(s)	143, 167, 520, 808, 927, 1318
DpnI	GATC	7 cut(s)	359, 486, 671, 729, 1011, 1215, 1359
DpnII	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
DraI	TTTAAA	2 cut(s)	52, 183
DraIII	CACNNNGTG	2 cut(s)	577, 797
EaeI	YGGCCR	1 cut(s)	288
Eco105I	TACGTA	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	962
Eco31I	GGTCTC	2 cut(s)	601, 1348
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	584, 981
Eco88I	CYCGRG	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	290, 910, 1338
EcoT22I	ATGCAT	1 cut(s)	1233
EcoT38I	GRGCYC	1 cut(s)	962
FaeI	CATG	3 cut(s)	115, 399, 680
FalI	AAGNNNNNCTT	2 cut(s)	979, 1011
FatI	CATG	3 cut(s)	111, 395, 676
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
FokI	GGATG	5 cut(s)	303, 396, 617, 788, 1134
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
FspBI	CTAG	6 cut(s)	233, 321, 741, 794, 867, 1277
GluI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
HaeIII	GGCC	3 cut(s)	290, 419, 1287
Hin1II	CATG	3 cut(s)	115, 399, 680
HincII	GTYRAC	3 cut(s)	160, 373, 883
HindII	GTYRAC	3 cut(s)	160, 373, 883
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	108, 304, 722, 1028
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	1059
Hpy166II	GTNNAC	3 cut(s)	160, 373, 883
Hpy188I	TCNGA	9 cut(s)	144, 170, 214, 484, 549, 727, 923, 1191, 1370
Hpy188III	TCNNGA	3 cut(s)	298, 488, 1007
Hpy8I	GTNNAC	3 cut(s)	160, 373, 883
HpyAV	CCTTC	4 cut(s)	322, 404, 424, 873
HpyCH4III	ACNGT	3 cut(s)	274, 902, 1366
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	9 cut(s)	104, 452, 817, 824, 951, 981, 1165, 1181, 1231
HpyF10VI	GCNNNNNNNGC	6 cut(s)	568, 809, 957, 987, 1130, 1162
HpyF3I	CTNAG	6 cut(s)	143, 167, 520, 808, 927, 1318
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	115, 399, 680
Ksp22I	TGATCA	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
LmnI	GCTCC	2 cut(s)	129, 784
Lsp1109I	GCAGC	5 cut(s)	76, 108, 787, 930, 1322
LweI	GCATC	3 cut(s)	639, 697, 766
MaeI	CTAG	6 cut(s)	233, 321, 741, 794, 867, 1277
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	7 cut(s)	359, 486, 671, 729, 1011, 1215, 1359
MboI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
MflI	RGATCY	4 cut(s)	357, 484, 1009, 1213
MhlI	GDGCHC	1 cut(s)	962
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	3 cut(s)	117, 716, 1037
MmeI	TCCRAC	2 cut(s)	753, 1002
MnlI	CCTC	7 cut(s)	409, 568, 586, 949, 1018, 1144, 1277
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	1233
MroXI	GAANNNNTTC	2 cut(s)	44, 434
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	7 cut(s)	51, 159, 182, 239, 1047, 1248, 1299
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	3 cut(s)	292, 912, 1340
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	3 cut(s)	292, 912, 1340
MwoI	GCNNNNNNNGC	6 cut(s)	568, 809, 957, 987, 1130, 1162
NdeII	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
NlaIII	CATG	3 cut(s)	115, 399, 680
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	1233
NspI	RCATGY	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	96
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	2 cut(s)	44, 434
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	8 cut(s)	66, 123, 570, 802, 805, 945, 1289, 1312
PleI	GAGTC	3 cut(s)	116, 716, 1036
PpsI	GAGTC	3 cut(s)	116, 716, 1036
Ppu21I	YACGTR	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	701
Psp6I	CCWGG	3 cut(s)	290, 910, 1338
PspGI	CCWGG	3 cut(s)	290, 910, 1338
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	527
PsrI	GAACNNNNNNTAC	2 cut(s)	599, 631
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	4 cut(s)	357, 484, 1009, 1213
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	881
SaqAI	TTAA	7 cut(s)	51, 159, 182, 239, 1047, 1248, 1299
SatI	GCNGC	8 cut(s)	65, 122, 569, 801, 804, 944, 1288, 1311
Sau3AI	GATC	7 cut(s)	357, 484, 669, 727, 1009, 1213, 1357
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	3 cut(s)	117, 716, 1037
ScrFI	CCNGG	3 cut(s)	292, 912, 1340
SduI	GDGCHC	1 cut(s)	962
SfaNI	GCATC	3 cut(s)	639, 697, 766
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SnaBI	TACGTA	1 cut(s)	625
SsiI	CCGC	5 cut(s)	13, 568, 804, 1070, 1288
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	6 cut(s)	233, 321, 741, 794, 867, 1277
StyD4I	CCNGG	3 cut(s)	290, 910, 1338
TaaI	ACNGT	3 cut(s)	274, 902, 1366
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	96, 882, 962
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	3 cut(s)	571, 806, 1290
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	7 cut(s)	51, 159, 182, 239, 1047, 1248, 1299
Tru9I	TTAA	7 cut(s)	51, 159, 182, 239, 1047, 1248, 1299
TscAI	CASTG	5 cut(s)	81, 277, 517, 819, 978
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	64, 121, 800, 943, 1310
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	8 cut(s)	165, 217, 384, 427, 443, 485, 951, 1100
TspGWI	ACGGA	3 cut(s)	178, 1226, 1368
TspRI	CASTG	5 cut(s)	81, 277, 517, 819, 978
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	3 cut(s)	44, 184, 583
XceI	RCATGY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	2 cut(s)	44, 434
XspI	CTAG	6 cut(s)	233, 321, 741, 794, 867, 1277
Zsp2I	ATGCAT	1 cut(s)	1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.