FvH4_7g26330

platelet degranulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005918
Physical Location & Seq
Reverse (-)
19919045 .. 19923076
4032 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26330.t1

Sequence Viewer

Length: 1257 bp
ATGTCGAATGGGGACCGTAGACAGAGTATACGTTTATTTGCACTTGAAACACAGAGGGCACAGCAAAAACAGAACCAGAATCTGAATAAGGGAAAAAAGGCTGGTGGTACCAAAGAACATCACGCAAATGCTGCTACTATGCCATCTGGAAATTCTTTACCAGAAAGAAGCAAGCTTCAACTGTTGCTTGGTAAACTGAAAAGGAAAGATGTGTATAGTATATTCTCAGAGCCAGTAAATCCTGAAGAGGTGGAAGATTATTATCATTTCATCAAAGAACCAATGGATTTTGGCACAATTACAACAAAACTTGAAGGAGGAAGCTATAAAACACTGCAAGAATTTGAGCATGATGTAACACTGGTATGGAGAAATGCTATGCTTTTCAACGATTCAAGTACCGTTTATCACAAAGAGGCTTGTGCGATAAGAAATCTAGCGAAGAAGTTGTTTAACTCTTTGAAAACTGACCCTGAGAACTTTGTGGAATTACCAAAAACTGGATGCAGAGGTGGAAAAAGATTCAAGTATTCAGAAGTAAATCGAAGCTCTACCTATCGACCTCTGAATACATCACTCAATGAGAATGAGTCGATAGTATCTGCAGTCTGTCTGAGCCCACAAGAGTTAGTGCAGAATAGGGATGGACACGGTGAAAGCCTACTGCAGTTTGTTAAAAATCTAGGACCTTCTGCTAATACATTTGCTGGTCCAAAGTTACAAGACCTTAATGGAGAATCAATCGAGGCCATTCCAGATCGAGACACTAGGAATTTCAGCTTCACGAATGCCTTACTTGGAGACGAGAATCCTGAATGGGACACATACAGTAACCTTGGGGGAAAACCAGGCAGCAACTTGCATAAGTACCAAAGGATTGCTGATATAGGAAGTTATTCCAGCACTGTGGAGGAGGCAGGCCAAGACTGGAAACGGTTCAGGCCAACAGAGGCACCGCCACAACCTGTTTGTAGCCAATCCACATCAGCTGGCTGGTCCTCACAGTGGCTTGAGATTGGTCCATCAACCTCTGATGTGAAGAAGTCAGTAGCAGGCCAAGAGAATGGCTCAGGCCAAGATTGGAAACGGTTCAGGCCAACTGAGGCACCACCACAGCCTGTTTCTAGCCGGCTGTTCCTGCCTCAATCAACATCAGTTGGCTGGCCCTCACTGAGGCGTGACATTGGTGCATCAACCTCTGATGTGAAGAAGTCTATAAGTTTAAAGGACATAGATGAATGGCTCCGCTACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

419

Amino Acids

46.8

Weight (kDa)

8.46

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 141 5.6e-24 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 3 cut(s) 107, 952, 1105
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 2 cut(s) 19, 28
AciI CCGC 2 cut(s) 956, 1246
AcsI RAATTY 3 cut(s) 151, 341, 772
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 109, 400, 869
AfiI CCNNNNNNNGG 3 cut(s) 500, 1005, 1173
AgsI TTSAA 7 cut(s) 47, 179, 314, 388, 396, 463, 526
AjnI CCWGG 1 cut(s) 847
AluBI AGCT 5 cut(s) 175, 324, 549, 780, 989
AluI AGCT 5 cut(s) 175, 324, 549, 780, 989
Alw26I GTCTC 2 cut(s) 756, 795
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 7 cut(s) 747, 919, 941, 1054, 1072, 1094, 1163
ApeKI GCWGC 2 cut(s) 131, 852
ApoI RAATTY 3 cut(s) 151, 341, 772
Asp700I GAANNNNTTC 3 cut(s) 895, 935, 1088
Asp718I GGTACC 1 cut(s) 107
AspS9I GGNCC 6 cut(s) 13, 686, 710, 996, 1019, 1164
AsuHPI GGTGA 1 cut(s) 665
AvaII GGWCC 5 cut(s) 13, 686, 710, 996, 1019
BaeGI GKGCMC 1 cut(s) 61
BanI GGYRCC 3 cut(s) 107, 952, 1105
BanII GRGCYC 1 cut(s) 620
BbvI GCAGC 2 cut(s) 118, 864
BccI CCATC 3 cut(s) 151, 638, 1030
BciT130I CCWGG 1 cut(s) 849
BcoDI GTCTC 2 cut(s) 756, 795
BfaI CTAG 4 cut(s) 437, 683, 768, 1125
BfmI CTRYAG 2 cut(s) 603, 665
BisI GCNGC 2 cut(s) 132, 853
BlsI GCNGC 2 cut(s) 133, 854
Bme1390I CCNGG 1 cut(s) 849
Bme18I GGWCC 5 cut(s) 13, 686, 710, 996, 1019
BmgT120I GGNCC 6 cut(s) 13, 686, 710, 996, 1019, 1164
BmiI GGNNCC 5 cut(s) 14, 109, 954, 1107, 1244
BmrFI CCNGG 1 cut(s) 849
BmsI GCATC 2 cut(s) 494, 1199
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
Bpu10I CCTNAGC 1 cut(s) 1069
BpuEI CTTGAG 1 cut(s) 1031
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 835
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 1005, 1173
Bse118I RCCGGY 1 cut(s) 1128
Bse1I ACTGG 4 cut(s) 233, 366, 505, 932
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 1 cut(s) 849
BseDI CCNNGG 1 cut(s) 835
BseGI GGATG 2 cut(s) 509, 649
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 3 cut(s) 500, 1005, 1173
BseMII CTCAG 6 cut(s) 240, 465, 605, 1083, 1092, 1163
BseNI ACTGG 4 cut(s) 233, 366, 505, 932
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 2 cut(s) 118, 864
BsgI GTGCAG 1 cut(s) 653
BshFI GGCC 7 cut(s) 749, 921, 943, 1056, 1074, 1096, 1165
BshNI GGYRCC 3 cut(s) 107, 952, 1105
BsiSI CCGG 1 cut(s) 1129
BslFI GGGAC 2 cut(s) 26, 833
BslI CCNNNNNNNGG 3 cut(s) 500, 1005, 1173
BsmAI GTCTC 2 cut(s) 756, 795
BsmBI CGTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 26, 833
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 7 cut(s) 749, 921, 943, 1056, 1074, 1096, 1165
Bsp1286I GDGCHC 2 cut(s) 61, 620
Bsp143I GATC 1 cut(s) 757
BspACI CCGC 2 cut(s) 956, 1246
BspANI GGCC 7 cut(s) 749, 921, 943, 1056, 1074, 1096, 1165
BspCNI CTCAG 6 cut(s) 239, 466, 606, 1082, 1093, 1164
BspLI GGNNCC 5 cut(s) 14, 109, 954, 1107, 1244
BspMAI CTGCAG 2 cut(s) 607, 669
BspT107I GGYRCC 3 cut(s) 107, 952, 1105
BsrFI RCCGGY 1 cut(s) 1128
BsrI ACTGG 4 cut(s) 233, 366, 505, 932
BssAI RCCGGY 1 cut(s) 1128
BssECI CCNNGG 1 cut(s) 835
BssMI GATC 1 cut(s) 757
BssNAI GTATAC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 835
Bst1107I GTATAC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 9 cut(s) 17, 183, 403, 653, 830, 907, 936, 1005, 1089
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 6 cut(s) 173, 919, 991, 1054, 1130, 1163
BstDEI CTNAG 6 cut(s) 226, 474, 614, 1069, 1101, 1172
BstENI CCTNNNNNAGG 1 cut(s) 1171
BstF5I GGATG 2 cut(s) 509, 649
BstKTI GATC 1 cut(s) 760
BstMAI GTCTC 2 cut(s) 756, 795
BstMBI GATC 1 cut(s) 757
BstMWI GCNNNNNNNGC 2 cut(s) 131, 1138
BstNI CCWGG 1 cut(s) 849
BstSCI CCNGG 1 cut(s) 847
BstSFI CTRYAG 2 cut(s) 603, 665
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 118, 864
BstXI CCANNNNNNTGG 2 cut(s) 907, 1064
BstZ17I GTATAC 1 cut(s) 29
BsuRI GGCC 7 cut(s) 749, 921, 943, 1056, 1074, 1096, 1165
BtsCI GGATG 2 cut(s) 509, 649
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 5 cut(s) 332, 359, 903, 1010, 1169
Cac8I GCNNGC 6 cut(s) 173, 919, 991, 1054, 1130, 1163
CaiI CAGNNNCTG 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 1128
Cfr13I GGNCC 6 cut(s) 13, 686, 710, 996, 1019, 1164
Csp6I GTAC 3 cut(s) 108, 399, 868
CviAII CATG 1 cut(s) 350
CviQI GTAC 3 cut(s) 108, 399, 868
DdeI CTNAG 6 cut(s) 226, 474, 614, 1069, 1101, 1172
DpnI GATC 1 cut(s) 759
DpnII GATC 1 cut(s) 757
DraI TTTAAA 1 cut(s) 1224
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 835
Eco24I GRGCYC 1 cut(s) 620
Eco47I GGWCC 5 cut(s) 13, 686, 710, 996, 1019
Eco57I CTGAAG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 1171
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 835
Esp3I CGTCTC 1 cut(s) 795
FaeI CATG 1 cut(s) 353
FaqI GGGAC 2 cut(s) 26, 833
FatI CATG 1 cut(s) 349
FblI GTMKAC 2 cut(s) 19, 28
Fnu4HI GCNGC 2 cut(s) 132, 853
FokI GGATG 2 cut(s) 516, 656
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 132, 853
FspBI CTAG 4 cut(s) 437, 683, 768, 1125
GluI GCNGC 2 cut(s) 132, 853
HaeIII GGCC 7 cut(s) 749, 921, 943, 1056, 1074, 1096, 1165
HapII CCGG 1 cut(s) 1129
Hin1II CATG 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 6 cut(s) 79, 392, 522, 590, 737, 808
HpaII CCGG 1 cut(s) 1129
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 3 cut(s) 20, 29, 194
Hpy188I TCNGA 7 cut(s) 84, 229, 535, 567, 615, 1033, 1201
Hpy188III TCNNGA 6 cut(s) 147, 242, 755, 761, 784, 812
Hpy8I GTNNAC 3 cut(s) 20, 29, 194
HpyAV CCTTC 2 cut(s) 308, 699
HpyCH4III ACNGT 9 cut(s) 17, 183, 403, 653, 830, 907, 936, 1005, 1089
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 8 cut(s) 41, 337, 507, 605, 634, 667, 862, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 1138
HpyF3I CTNAG 6 cut(s) 226, 474, 614, 1069, 1101, 1172
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 353
KpnI GGTACC 1 cut(s) 111
KroI GCCGGC 1 cut(s) 1128
KroNI GCCGGC 1 cut(s) 1130
Kzo9I GATC 1 cut(s) 757
LmnI GCTCC 1 cut(s) 1248
Lsp1109I GCAGC 2 cut(s) 118, 864
LweI GCATC 2 cut(s) 494, 1199
MaeI CTAG 4 cut(s) 437, 683, 768, 1125
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 4 cut(s) 355, 717, 830, 1178
MalI GATC 1 cut(s) 759
MboI GATC 1 cut(s) 757
MboII GAAGA 5 cut(s) 257, 266, 454, 1051, 1219
MhlI GDGCHC 2 cut(s) 61, 620
MluCI AATT 5 cut(s) 151, 297, 341, 488, 772
MlyI GAGTC 1 cut(s) 599
MroNI GCCGGC 1 cut(s) 1128
MroXI GAANNNNTTC 3 cut(s) 895, 935, 1088
MseI TTAA 4 cut(s) 453, 675, 729, 1223
MslI CAYNNNNRTG 2 cut(s) 126, 364
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 1 cut(s) 1129
MspR9I CCNGG 1 cut(s) 849
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 1 cut(s) 849
MwoI GCNNNNNNNGC 2 cut(s) 131, 1138
NaeI GCCGGC 1 cut(s) 1130
NdeII GATC 1 cut(s) 757
NgoMIV GCCGGC 1 cut(s) 1128
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 5 cut(s) 14, 109, 954, 1107, 1244
NmuCI GTSAC 1 cut(s) 1178
PctI GAATGC 1 cut(s) 793
PdiI GCCGGC 1 cut(s) 1130
PdmI GAANNNNTTC 3 cut(s) 895, 935, 1088
PfeI GAWTC 5 cut(s) 79, 392, 522, 737, 808
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 2 cut(s) 133, 854
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PpuMI RGGWCCY 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 847
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 5 cut(s) 14, 109, 954, 1107, 1244
PspPI GGNCC 6 cut(s) 13, 686, 710, 996, 1019, 1164
PspPPI RGGWCCY 1 cut(s) 686
PstI CTGCAG 2 cut(s) 607, 669
PstNI CAGNNNCTG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 3 cut(s) 109, 400, 869
RsaNI GTAC 3 cut(s) 108, 399, 868
RseI CAYNNNNRTG 2 cut(s) 126, 364
SaqAI TTAA 4 cut(s) 453, 675, 729, 1223
SatI GCNGC 2 cut(s) 132, 853
Sau3AI GATC 1 cut(s) 757
Sau96I GGNCC 6 cut(s) 13, 686, 710, 996, 1019, 1164
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 849
SduI GDGCHC 2 cut(s) 61, 620
SfaNI GCATC 2 cut(s) 494, 1199
SfcI CTRYAG 2 cut(s) 603, 665
SinI GGWCC 5 cut(s) 13, 686, 710, 996, 1019
SmiMI CAYNNNNRTG 2 cut(s) 126, 364
SmlI CTYRAG 1 cut(s) 1010
SmoI CTYRAG 1 cut(s) 1010
Sse9I AATT 5 cut(s) 151, 297, 341, 488, 772
SsiI CCGC 2 cut(s) 956, 1246
SspMI CTAG 4 cut(s) 437, 683, 768, 1125
StyD4I CCNGG 1 cut(s) 847
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 9 cut(s) 17, 183, 403, 653, 830, 907, 936, 1005, 1089
TaiI ACGT 1 cut(s) 34
TaqI TCGA 6 cut(s) 5, 544, 559, 593, 744, 760
TasI AATT 5 cut(s) 151, 297, 341, 488, 772
TfiI GAWTC 5 cut(s) 79, 392, 522, 737, 808
Tru1I TTAA 4 cut(s) 453, 675, 729, 1223
Tru9I TTAA 4 cut(s) 453, 675, 729, 1223
TscAI CASTG 5 cut(s) 339, 366, 910, 1010, 1176
TseFI GTSAC 1 cut(s) 1178
TseI GCWGC 2 cut(s) 131, 852
Tsp45I GTSAC 1 cut(s) 1178
TspDTI ATGAA 2 cut(s) 259, 1251
TspRI CASTG 5 cut(s) 339, 366, 910, 1010, 1176
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 5 cut(s) 13, 686, 710, 996, 1019
XagI CCTNNNNNAGG 1 cut(s) 1171
XapI RAATTY 3 cut(s) 151, 341, 772
XmiI GTMKAC 2 cut(s) 19, 28
XmnI GAANNNNTTC 3 cut(s) 895, 935, 1088
XspI CTAG 4 cut(s) 437, 683, 768, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.