Rh1DG377700

platelet degranulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005918
Physical Location & Seq
Reverse (-)
59974295 .. 59976835
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG377700.1

Sequence Viewer

Length: 1047 bp
ATGATGTGGAATGGGGACCGTAGACAGAGTTTACGTATATTTGCACTTGAAACACAGAAGAAGCAGCAAAAAGAGAACCAGAATCTGAGTCAGGGAAAAAAGGCTGGTAGTACTAGTACCAAAGATCATCAGACAAATGCTGCTGTTATGTCATCTGGAAATCCTTTACCAGAAAGAAGCAAGCTTCAACTGTTGCTTGGAGAGATAACATACCTCGGAGCCAGTAAATGCAGAAGAGCAAAACTCAATGGAGGAAGCTACAAAGCACTGCAAGAATTTGAGCATGATGCAACACTGGTATGGAGCAATGCTATGCTTTTCAACGATTCAAGTACCCTTTATTATAAAGAGGGTCTTTCGATAAGAAATCTAGCGACGAAGTTGTTTAATTCTTTGAAAACTGACCCTGAGAGCTTTGTGGAAATATCAAAATCTGGATGCAGAGGTGGAAGAAGATCCAAATATTCTGAAGTAGATCAATGCTATACCTACCGGCCTCTGAATAAATTGCTCAATGAAAATGAGTCAATAACATCTACAGTCTATCTCAGCCCACAAGAACTAGTGCAGAATAAGCAGAATAGTACTGGATACACAGAAAGCCTGCTGCAGTTTGTTAAAGATCTAGGGCCTACTGCTAATACATTTGCATGTTGCAAGTTACAAAGGTATGCAGAAGAAGCGGCTAACGTGGAAAGGGTATTAACAGCAGATCAAGACACTTGGGGTTTCCACTTTATGAATGCCTTACTTGGATATGGGAGTTCTGAATGGGACACATACAGTAACCTCGGGGGAAAACCAGTTCGAACTATGCTTGATCAGGACAATGGGAATTCTGACTCTACCAGATCCTTATTTGGAAGTTCCAACTTATCTGCTCAGTACAAGACTACAAGCATCCACTCCAGTGGAAAATCTGTCTGGGGCATGCCTGATCAAAACTCCTGGTGTTCCTTCATCGACAATCCCTCATTTGGAAATGGATATTCTTTTCCGACAACTTATATTCAAGTGCTTTTGATAAGGGTAAGAATGTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

348

Amino Acids

39.02

Weight (kDa)

8.96

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 79 - 117 8.5e-07 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 683
AclWI GGATC 2 cut(s) 450, 846
AcsI RAATTY 2 cut(s) 275, 835
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 5 cut(s) 112, 118, 334, 586, 887
AfiI CCNNNNNNNGG 1 cut(s) 977
AgsI TTSAA 6 cut(s) 50, 188, 322, 330, 397, 1013
AhlI ACTAGT 2 cut(s) 113, 562
AjnI CCWGG 1 cut(s) 947
AleI CACNNNNGTG 1 cut(s) 909
AloI GAACNNNNNNTCC 2 cut(s) 789, 821
AluBI AGCT 3 cut(s) 184, 258, 414
AluI AGCT 3 cut(s) 184, 258, 414
AlwI GGATC 2 cut(s) 450, 846
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 791
AoxI GGCC 2 cut(s) 494, 629
ApeKI GCWGC 3 cut(s) 64, 140, 607
ApoI RAATTY 2 cut(s) 275, 835
AspS9I GGNCC 2 cut(s) 16, 629
AsuII TTCGAA 1 cut(s) 808
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 1 cut(s) 16
BbvI GCAGC 3 cut(s) 76, 127, 594
BciT130I CCWGG 1 cut(s) 949
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 2 cut(s) 820, 937
BcuI ACTAGT 2 cut(s) 113, 562
BfaI CTAG 4 cut(s) 114, 371, 563, 626
BfmI CTRYAG 2 cut(s) 537, 608
BfuI GTATCC 1 cut(s) 584
BglII AGATCT 1 cut(s) 622
BisI GCNGC 4 cut(s) 65, 141, 608, 684
BlsI GCNGC 4 cut(s) 66, 142, 609, 685
BmcAI AGTACT 2 cut(s) 112, 586
Bme1390I CCNGG 1 cut(s) 949
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 16, 629
BmiI GGNNCC 2 cut(s) 17, 220
BmrFI CCNGG 1 cut(s) 949
BmsI GCATC 3 cut(s) 277, 428, 909
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 892
Bpu14I TTCGAA 1 cut(s) 808
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 214, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 977
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 5 cut(s) 222, 300, 592, 803, 909
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 2 cut(s) 214, 790
BseGI GGATG 2 cut(s) 443, 900
BseLI CCNNNNNNNGG 1 cut(s) 977
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 4 cut(s) 77, 399, 562, 896
BseNI ACTGG 5 cut(s) 222, 300, 592, 803, 909
BseXI GCAGC 3 cut(s) 76, 127, 594
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 2 cut(s) 496, 631
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 29, 788
BslI CCNNNNNNNGG 1 cut(s) 977
BsmFI GGGAC 2 cut(s) 29, 788
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 2 cut(s) 496, 631
BsoBI CYCGRG 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 808
Bsp143I GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
BspACI CCGC 1 cut(s) 683
BspANI GGCC 2 cut(s) 496, 631
BspCNI CTCAG 4 cut(s) 78, 400, 561, 895
BspLI GGNNCC 2 cut(s) 17, 220
BspMAI CTGCAG 1 cut(s) 612
BspPI GGATC 2 cut(s) 450, 846
BspQI GCTCTTC 1 cut(s) 229
BspT104I TTCGAA 1 cut(s) 808
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 5 cut(s) 222, 300, 592, 803, 909
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 214, 790
BssMI GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
Bst2UI CCWGG 1 cut(s) 949
Bst4CI ACNGT 4 cut(s) 20, 192, 541, 785
Bst6I CTCTTC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 3 cut(s) 182, 605, 932
BstDEI CTNAG 4 cut(s) 86, 408, 548, 882
BstF5I GGATG 2 cut(s) 443, 900
BstKTI GATC 8 cut(s) 127, 458, 478, 625, 715, 823, 854, 940
BstMBI GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
BstMWI GCNNNNNNNGC 2 cut(s) 574, 680
BstNI CCWGG 1 cut(s) 949
BstNSI RCATGY 2 cut(s) 654, 934
BstSCI CCNGG 1 cut(s) 947
BstSFI CTRYAG 2 cut(s) 537, 608
BstSNI TACGTA 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 76, 127, 594
BstX2I RGATCY 3 cut(s) 455, 622, 851
BstXI CCANNNNNNTGG 1 cut(s) 911
BstYI RGATCY 3 cut(s) 455, 622, 851
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 2 cut(s) 496, 631
BtsCI GGATG 2 cut(s) 443, 900
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 3 cut(s) 266, 293, 916
Cac8I GCNNGC 3 cut(s) 182, 605, 932
CaiI CAGNNNCTG 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 16, 629
Csp6I GTAC 5 cut(s) 111, 117, 333, 585, 886
CviAII CATG 3 cut(s) 284, 651, 931
CviQI GTAC 5 cut(s) 111, 117, 333, 585, 886
DdeI CTNAG 4 cut(s) 86, 408, 548, 882
DpnI GATC 8 cut(s) 126, 457, 477, 624, 714, 822, 853, 939
DpnII GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco105I TACGTA 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 947
FaeI CATG 3 cut(s) 287, 654, 934
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 29, 788
FatI CATG 3 cut(s) 283, 650, 930
FbaI TGATCA 2 cut(s) 820, 937
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 4 cut(s) 65, 141, 608, 684
FokI GGATG 2 cut(s) 450, 887
Fsp4HI GCNGC 4 cut(s) 65, 141, 608, 684
FspBI CTAG 4 cut(s) 114, 371, 563, 626
GluI GCNGC 4 cut(s) 65, 141, 608, 684
GsuI CTGGAG 1 cut(s) 892
HaeIII GGCC 2 cut(s) 496, 631
HapII CCGG 1 cut(s) 493
Hin1II CATG 3 cut(s) 287, 654, 934
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 82, 88, 326, 524, 842
HpaII CCGG 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 23, 32
Hpy188I TCNGA 8 cut(s) 87, 132, 218, 469, 501, 769, 841, 999
Hpy188III TCNNGA 4 cut(s) 156, 435, 716, 824
Hpy8I GTNNAC 2 cut(s) 23, 32
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 967
HpyCH4III ACNGT 4 cut(s) 20, 192, 541, 785
HpyCH4IV ACGT 2 cut(s) 34, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 574, 680
HpyF3I CTNAG 4 cut(s) 86, 408, 548, 882
HpySE526I ACGT 2 cut(s) 34, 690
Hsp92II CATG 3 cut(s) 287, 654, 934
Ksp22I TGATCA 2 cut(s) 820, 937
Kzo9I GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 218, 303
Lsp1109I GCAGC 3 cut(s) 76, 127, 594
LweI GCATC 3 cut(s) 277, 428, 909
MaeI CTAG 4 cut(s) 114, 371, 563, 626
MaeII ACGT 2 cut(s) 34, 690
MaeIII GTNAC 2 cut(s) 660, 785
MalI GATC 8 cut(s) 126, 457, 477, 624, 714, 822, 853, 939
MboI GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
MboII GAAGA 5 cut(s) 70, 246, 462, 465, 689
MflI RGATCY 3 cut(s) 455, 622, 851
MluCI AATT 4 cut(s) 275, 388, 506, 835
MlyI GAGTC 3 cut(s) 97, 533, 836
MmeI TCCRAC 2 cut(s) 894, 1022
MnlI CCTC 7 cut(s) 224, 245, 343, 437, 507, 800, 982
MseI TTAA 3 cut(s) 387, 618, 704
MslI CAYNNNNRTG 3 cut(s) 298, 649, 909
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 949
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 1 cut(s) 949
MwoI GCNNNNNNNGC 2 cut(s) 574, 680
NdeII GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
NlaIII CATG 3 cut(s) 287, 654, 934
NlaIV GGNNCC 2 cut(s) 17, 220
NspI RCATGY 2 cut(s) 654, 934
NspV TTCGAA 1 cut(s) 808
OliI CACNNNNGTG 1 cut(s) 909
PaeI GCATGC 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 229
PctI GAATGC 1 cut(s) 748
PfeI GAWTC 2 cut(s) 82, 326
PkrI GCNGC 4 cut(s) 66, 142, 609, 685
PleI GAGTC 3 cut(s) 96, 532, 836
PpsI GAGTC 3 cut(s) 96, 532, 836
Ppu21I YACGTR 1 cut(s) 35
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 947
PspGI CCWGG 1 cut(s) 947
PspN4I GGNNCC 2 cut(s) 17, 220
PspPI GGNCC 2 cut(s) 16, 629
PstI CTGCAG 1 cut(s) 612
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 3 cut(s) 455, 622, 851
RsaI GTAC 5 cut(s) 112, 118, 334, 586, 887
RsaNI GTAC 5 cut(s) 111, 117, 333, 585, 886
RseI CAYNNNNRTG 3 cut(s) 298, 649, 909
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 387, 618, 704
SatI GCNGC 4 cut(s) 65, 141, 608, 684
Sau3AI GATC 8 cut(s) 124, 455, 475, 622, 712, 820, 851, 937
Sau96I GGNCC 2 cut(s) 16, 629
ScaI AGTACT 2 cut(s) 112, 586
SchI GAGTC 3 cut(s) 97, 533, 836
ScrFI CCNGG 1 cut(s) 949
SfaNI GCATC 3 cut(s) 277, 428, 909
SfcI CTRYAG 2 cut(s) 537, 608
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 3 cut(s) 298, 649, 909
SnaBI TACGTA 1 cut(s) 35
SpeI ACTAGT 2 cut(s) 113, 562
SphI GCATGC 1 cut(s) 934
Sse9I AATT 4 cut(s) 275, 388, 506, 835
SsiI CCGC 1 cut(s) 683
SspI AATATT 1 cut(s) 464
SspMI CTAG 4 cut(s) 114, 371, 563, 626
StyD4I CCNGG 1 cut(s) 947
TaaI ACNGT 4 cut(s) 20, 192, 541, 785
TaiI ACGT 2 cut(s) 37, 693
TaqI TCGA 3 cut(s) 359, 808, 963
TasI AATT 4 cut(s) 275, 388, 506, 835
TatI WGTACW 3 cut(s) 110, 584, 885
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 2 cut(s) 82, 326
Tru1I TTAA 3 cut(s) 387, 618, 704
Tru9I TTAA 3 cut(s) 387, 618, 704
TscAI CASTG 3 cut(s) 273, 300, 916
TseI GCWGC 3 cut(s) 64, 140, 607
TspDTI ATGAA 3 cut(s) 531, 755, 949
TspRI CASTG 3 cut(s) 273, 300, 916
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 275, 835
XceI RCATGY 2 cut(s) 654, 934
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 4 cut(s) 114, 371, 563, 626
ZrmI AGTACT 2 cut(s) 112, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.