Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005918

Physical Location & Seq

Genomic Coordinates Reverse (-)

41344838 .. 41348949

Gene Structure 4112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGTCCAGTAAAAGATTTGGGAAGTCAAAGTTGTTGAGAGAGGGGTATAGGAAGAGCCCCAGATTGTCTGCTTTGGAAGACTGGAAGGCTTGTGGCACTAGAATTAGTGCTATTGCTGGTAATACTAGCACACAGCAAATGAAGAGCTATTTGGGTTATGATCAAGGACCAGCTTCTAGGACAAGGGATAGAAAGAAAAGAAGATTCACACCTTATAATGAAGCCGCCTACCCTTCTCGTTCAGCCTCACCAAATTTTGGTCCAGTGGAAACCAGTCAAGAAGATAACCAAACTAGTAGTGATCACCAGGTATTGTGGGGTAAAGATATTCGAAAACCTGCCTCAACTGATCAAAAATCCTCTGCTCTATCTGCATTATGGTTGCCAGAAAAGCACAAACTTGAGCTGGTTCTTGACATACTACAGAGGAGAGATACCAATGAAATATTTGCGGAGCCAGTTAACCCCAATGAGGTTCAGGATTATTATGAAATTATTGAAGAGCCTATGGATTTTGGGACCATGAGGGCTAAACTACATGAAGGAATGTATAAAAATCTTCAGCAATTTGAGCATGATGCATTTTTAGTAACAGAGAATGCAATGCATTTCAATTCCTCAGCTACCATTTATTTTAGACAGGCACGCTCCATACATGACTTAGCTAAGAAGGTATTTCACATTTTGAAAACCTATCCTGAGAAGTTGGAGTCAGAATTCTCAGAGGCTAGAAAAAGAACTGGTAGGAGGTCCCAAGTTGAAGTTGGAAAGTCACACTCATGTCCTAAAGTTGCTACAAATATGAAACACCTTGGCATGAAAATTGGTGGTTCATCAAAAGCTATGCGATCCTCGCTTAGTGGTTCATTAAATACCAGGAAATGTCTAGCAAAAACTGGATGCTCTGGTACTGATACACAAGAGCAGAAACTTCTTTCTGGGACTAAAGATGATGGAAGATCTATGTCTTTCGAAGCAGATCGACGCTACACATATCGACCTTGGAGATCCTTCCTCAGTGAGAATGAGTCTATTGGTTTGACGTTATCCACTGATCTAAAACAACTTGAGCATGTAAATCGCCAGGATATTGGTTACAGAGAAAGCTTGATGTCATTTGTCAAAGATTTAGGACCAACAGCTAAGATGATTGCTAGAAAGAAGATACTTGGATGTCTCCAACTGCAAGAGAGTGACTTTCCTTTGGCATCTACTAGTACCCAACGAGCACCTACCACTACTGCTTTTGCTGCAGCACCCTCTCATGGCAGGCATCCTACAATCATGAAGACCACTCGCACTACATTTCAGCTGCCATCCAGTGGTGACCAAAATAATTCACATGCTGAATTTTATCCAAATCATAGGAATGAGATTCATCAGTTGGATTCTTATCCCTTGAAACCTCACAATGGATCAGACTGCAGTTGCATAGCTTCTGGGTTCCAAAACACCAGCAACAAGTCAACAGCAATGATACGAAACCAAGGGAAGTTGCCTAATCAATTACAGTCTTTGGTATCACCTTCAGAGTCTCAGTCTAATGTGTTGAGAAACCTGGAAATTGCAAGTCTTAGTAATGAGAGCTGCACATATAAATTGACTCCAGCGCCTTTGAGAGGAGATGATGATGAAACAAAAGCTACTCAAGGCCCATGTCATGAATTTAGAAGCTTATCTCACACTAGCCAAATGCCAAAACCAGACCAAGTCAATCCAGTAGTGGCTCGACAGTTCGCATTCGATCTGCCATATTTGAGAGCTCAACTCGGTAAGATAAGTTCTTCTGGTCAGGATCGATTCTTGCATAATGGTTTAAGTGGTGAACTGAACTTTTCTGATAATATAGTTACCAGAGACACTCAATATGTACCAGCTGCCATGTGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

630

Amino Acids

70.79

Weight (kDa)

9.3

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	137 - 216	8.1e-21	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09360 FvH4_7g26330
malus_domestica	MD01G1172400.v1.1 MD04G1178300.v1.1 MD07G1238700.v1.1
prunus_persica	Prupe.2G267500_v2.0.a1 Prupe.6G298300_v2.0.a1
pyrus_communis	pycom01g18390 pycom07g21470
rosa_chinensis	RchiOBHm_Chr1g0372791 RchiOBHm_Chr3g0459751
rosa_laevigata	RLG00000025060 RLG00000026872
rosa_multiflora	Rmu_co8360863.1_g000001 Rmu_sc0000240.1_g000036 Rmu_ssc0000024.1_g000009
rosa_roxburghii	Rroxscaffold_6G00420000
rosa_rugosa	Rorug01G0374300 Rorug03G0038100
rosa_samantha	Rh1AG383100 Rh1BG346800 Rh1CG360100 Rh1DG377700 Rh3AG096600 Rh3BG099300 Rh3CG101200 Rh3DG100600
rosa_wichuraiana	Rw1G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	346
AccB7I	CCANNNNNTGG	2 cut(s)	257, 1322
AciI	CCGC	2 cut(s)	225, 452
AclWI	GGATC	4 cut(s)	843, 1002, 1423, 1803
AcsI	RAATTY	4 cut(s)	253, 716, 1349, 1664
AcuI	CTGAAG	2 cut(s)	545, 1512
AfaI	GTAC	3 cut(s)	910, 1219, 1872
AfiI	CCNNNNNNNGG	6 cut(s)	257, 472, 1265, 1322, 1412, 1619
AgsI	TTSAA	5 cut(s)	500, 613, 688, 761, 1402
AhlI	ACTAGT	2 cut(s)	293, 1214
AjnI	CCWGG	4 cut(s)	306, 875, 1083, 1557
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
Alw21I	GWGCWC	2 cut(s)	1231, 1765
Alw26I	GTCTC	3 cut(s)	1181, 1539, 1851
AlwI	GGATC	4 cut(s)	843, 1002, 1423, 1803
AoxI	GGCC	1 cut(s)	1651
ApeKI	GCWGC	5 cut(s)	1250, 1253, 1312, 1587, 1877
ApoI	RAATTY	4 cut(s)	253, 716, 1349, 1664
AspLEI	GCGC	1 cut(s)	1612
AspS9I	GGNCC	6 cut(s)	167, 260, 519, 750, 1133, 1652
AsuHPI	GGTGA	5 cut(s)	240, 296, 1337, 1515, 1835
AsuII	TTCGAA	2 cut(s)	331, 972
AvaII	GGWCC	5 cut(s)	167, 260, 519, 750, 1133
BanII	GRGCYC	2 cut(s)	59, 1765
BbsI	GAAGAC	2 cut(s)	84, 1295
Bbv12I	GWGCWC	2 cut(s)	1231, 1765
BbvCI	CCTCAGC	1 cut(s)	619
BbvI	GCAGC	5 cut(s)	1237, 1265, 1299, 1574, 1864
BccI	CCATC	2 cut(s)	947, 1324
BcgI	CGANNNNNNTGC	2 cut(s)	1061, 1095
BciT130I	CCWGG	4 cut(s)	308, 877, 1085, 1559
BclI	TGATCA	3 cut(s)	160, 301, 349
BcoDI	GTCTC	3 cut(s)	1181, 1539, 1851
BcuI	ACTAGT	2 cut(s)	293, 1214
BfaI	CTAG	9 cut(s)	99, 126, 177, 294, 729, 887, 1155, 1215, 1686
BfmI	CTRYAG	3 cut(s)	422, 1251, 1423
BfoI	RGCGCY	1 cut(s)	1613
BfuAI	ACCTGC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	959
BisI	GCNGC	6 cut(s)	225, 1251, 1254, 1313, 1588, 1878
BlsI	GCNGC	6 cut(s)	226, 1252, 1255, 1314, 1589, 1879
Bme1390I	CCNGG	4 cut(s)	308, 877, 1085, 1559
Bme18I	GGWCC	5 cut(s)	167, 260, 519, 750, 1133
BmgT120I	GGNCC	6 cut(s)	167, 260, 519, 750, 1133, 1652
BmiI	GGNNCC	4 cut(s)	456, 520, 752, 1445
BmrFI	CCNGG	4 cut(s)	308, 877, 1085, 1559
BmsI	GCATC	4 cut(s)	568, 890, 1217, 1282
BpiI	GAAGAC	2 cut(s)	84, 1295
BplI	GAGNNNNNCTC	2 cut(s)	1752, 1784
BpmI	CTGGAG	1 cut(s)	1590
Bpu10I	CCTNAGC	1 cut(s)	619
Bpu14I	TTCGAA	2 cut(s)	331, 972
BpuEI	CTTGAG	3 cut(s)	422, 1088, 1632
Bsa29I	ATCGAT	1 cut(s)	1798
BsaBI	GATNNNNATC	1 cut(s)	1392
BsaJI	CCNNGG	3 cut(s)	811, 1001, 1486
Bsc4I	CCNNNNNNNGG	6 cut(s)	257, 472, 1265, 1322, 1412, 1619
Bse1I	ACTGG	9 cut(s)	6, 86, 263, 273, 458, 745, 901, 1320, 1718
Bse3DI	GCAATG	2 cut(s)	609, 1479
Bse8I	GATNNNNATC	1 cut(s)	1392
BseBI	CCWGG	4 cut(s)	308, 877, 1085, 1559
BseCI	ATCGAT	1 cut(s)	1798
BseDI	CCNNGG	3 cut(s)	811, 1001, 1486
BseGI	GGATG	4 cut(s)	905, 1178, 1273, 1316
BseJI	GATNNNNATC	1 cut(s)	1392
BseLI	CCNNNNNNNGG	6 cut(s)	257, 472, 1265, 1322, 1412, 1619
BseMI	GCAATG	2 cut(s)	609, 1479
BseMII	CTCAG	5 cut(s)	633, 690, 735, 1030, 1550
BseNI	ACTGG	9 cut(s)	6, 86, 263, 273, 458, 745, 901, 1320, 1718
BseRI	GAGGAG	2 cut(s)	442, 1635
BseXI	GCAGC	5 cut(s)	1237, 1265, 1299, 1574, 1864
BsgI	GTGCAG	1 cut(s)	1573
BshFI	GGCC	1 cut(s)	1653
BshVI	ATCGAT	1 cut(s)	1798
BsiHKAI	GWGCWC	2 cut(s)	1231, 1765
BslFI	GGGAC	3 cut(s)	532, 736, 955
BslI	CCNNNNNNNGG	6 cut(s)	257, 472, 1265, 1322, 1412, 1619
BsmAI	GTCTC	3 cut(s)	1181, 1539, 1851
BsmFI	GGGAC	3 cut(s)	532, 736, 955
BsmI	GAATGC	2 cut(s)	604, 1739
BsnI	GGCC	1 cut(s)	1653
Bsp119I	TTCGAA	2 cut(s)	331, 972
Bsp1286I	GDGCHC	3 cut(s)	59, 1231, 1765
BspACI	CCGC	2 cut(s)	225, 452
BspANI	GGCC	1 cut(s)	1653
BspCNI	CTCAG	5 cut(s)	632, 691, 734, 1029, 1549
BspDI	ATCGAT	1 cut(s)	1798
BspHI	TCATGA	2 cut(s)	1284, 1660
BspLI	GGNNCC	4 cut(s)	456, 520, 752, 1445
BspMAI	CTGCAG	2 cut(s)	1255, 1427
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	4 cut(s)	843, 1002, 1423, 1803
BspQI	GCTCTTC	3 cut(s)	47, 137, 495
BspT104I	TTCGAA	2 cut(s)	331, 972
BsrDI	GCAATG	2 cut(s)	609, 1479
BsrI	ACTGG	9 cut(s)	6, 86, 263, 273, 458, 745, 901, 1320, 1718
BssECI	CCNNGG	3 cut(s)	811, 1001, 1486
BssT1I	CCWWGG	3 cut(s)	811, 1001, 1486
Bst2UI	CCWGG	4 cut(s)	308, 877, 1085, 1559
Bst4CI	ACNGT	2 cut(s)	1512, 1734
Bst6I	CTCTTC	3 cut(s)	47, 137, 495
BstBI	TTCGAA	2 cut(s)	331, 972
BstC8I	GCNNGC	2 cut(s)	646, 1271
BstEII	GGTNACC	1 cut(s)	1325
BstENI	CCTNNNNNAGG	1 cut(s)	1617
BstF5I	GGATG	4 cut(s)	905, 1178, 1273, 1316
BstH2I	RGCGCY	1 cut(s)	1613
BstHHI	GCGC	1 cut(s)	1612
BstMAI	GTCTC	3 cut(s)	1181, 1539, 1851
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 391, 571, 853, 1250
BstNI	CCWGG	4 cut(s)	308, 877, 1085, 1559
BstNSI	RCATGY	2 cut(s)	1076, 1346
BstPI	GGTNACC	1 cut(s)	1325
BstSCI	CCNGG	4 cut(s)	306, 875, 1083, 1557
BstSFI	CTRYAG	3 cut(s)	422, 1251, 1423
BstV1I	GCAGC	5 cut(s)	1237, 1265, 1299, 1574, 1864
BstV2I	GAAGAC	2 cut(s)	84, 1295
BstX2I	RGATCY	2 cut(s)	959, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	1091
BstYI	RGATCY	2 cut(s)	959, 1007
Bsu15I	ATCGAT	1 cut(s)	1798
BsuRI	GGCC	1 cut(s)	1653
BsuTUI	ATCGAT	1 cut(s)	1798
BtsCI	GGATG	4 cut(s)	905, 1178, 1273, 1316
BtsIMutI	CAGTG	4 cut(s)	270, 1024, 1050, 1327
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	646, 1271
CciI	TCATGA	2 cut(s)	1284, 1660
CfoI	GCGC	1 cut(s)	1612
Cfr13I	GGNCC	6 cut(s)	167, 260, 519, 750, 1133, 1652
ClaI	ATCGAT	1 cut(s)	1798
CseI	GACGC	1 cut(s)	993
CsiI	ACCWGGT	1 cut(s)	306
Csp6I	GTAC	3 cut(s)	909, 1218, 1871
CviQI	GTAC	3 cut(s)	909, 1218, 1871
Eam1104I	CTCTTC	3 cut(s)	47, 137, 495
EarI	CTCTTC	3 cut(s)	47, 137, 495
Ecl136II	GAGCTC	1 cut(s)	1763
Eco130I	CCWWGG	3 cut(s)	811, 1001, 1486
Eco24I	GRGCYC	2 cut(s)	59, 1765
Eco47I	GGWCC	5 cut(s)	167, 260, 519, 750, 1133
Eco53kI	GAGCTC	1 cut(s)	1763
Eco57I	CTGAAG	2 cut(s)	545, 1512
Eco91I	GGTNACC	1 cut(s)	1325
EcoICRI	GAGCTC	1 cut(s)	1763
EcoNI	CCTNNNNNAGG	1 cut(s)	1617
EcoO109I	RGGNCCY	1 cut(s)	750
EcoO65I	GGTNACC	1 cut(s)	1325
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	4 cut(s)	306, 875, 1083, 1557
EcoT14I	CCWWGG	3 cut(s)	811, 1001, 1486
EcoT22I	ATGCAT	2 cut(s)	583, 609
EcoT38I	GRGCYC	2 cut(s)	59, 1765
ErhI	CCWWGG	3 cut(s)	811, 1001, 1486
FaqI	GGGAC	3 cut(s)	532, 736, 955
FbaI	TGATCA	3 cut(s)	160, 301, 349
Fnu4HI	GCNGC	6 cut(s)	225, 1251, 1254, 1313, 1588, 1878
FokI	GGATG	4 cut(s)	912, 1185, 1260, 1303
FriOI	GRGCYC	2 cut(s)	59, 1765
Fsp4HI	GCNGC	6 cut(s)	225, 1251, 1254, 1313, 1588, 1878
FspBI	CTAG	9 cut(s)	99, 126, 177, 294, 729, 887, 1155, 1215, 1686
GlaI	GCGC	1 cut(s)	1611
GluI	GCNGC	6 cut(s)	225, 1251, 1254, 1313, 1588, 1878
GsuI	CTGGAG	1 cut(s)	1590
HaeII	RGCGCY	1 cut(s)	1613
HaeIII	GGCC	1 cut(s)	1653
HgaI	GACGC	1 cut(s)	993
HhaI	GCGC	1 cut(s)	1612
Hin6I	GCGC	1 cut(s)	1610
HinP1I	GCGC	1 cut(s)	1610
HincII	GTYRAC	2 cut(s)	463, 1467
HindII	GTYRAC	2 cut(s)	463, 1467
HindIII	AAGCTT	2 cut(s)	1105, 1672
HinfI	GANTC	8 cut(s)	204, 710, 1028, 1375, 1388, 1532, 1603, 1800
HpaI	GTTAAC	1 cut(s)	463
HphI	GGTGA	5 cut(s)	240, 296, 1337, 1515, 1835
Hpy166II	GTNNAC	3 cut(s)	463, 1467, 1826
Hpy188I	TCNGA	5 cut(s)	715, 724, 1420, 1531, 1840
Hpy188III	TCNNGA	7 cut(s)	278, 413, 479, 698, 1285, 1661, 1793
Hpy8I	GTNNAC	3 cut(s)	463, 1467, 1826
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	6 cut(s)	79, 243, 536, 664, 1021, 1536
HpyCH4III	ACNGT	2 cut(s)	1512, 1734
HpyCH4IV	ACGT	1 cut(s)	1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 391, 571, 853, 1250
HpySE526I	ACGT	1 cut(s)	1043
HspAI	GCGC	1 cut(s)	1610
Ksp22I	TGATCA	3 cut(s)	160, 301, 349
KspAI	GTTAAC	1 cut(s)	463
LguI	GCTCTTC	3 cut(s)	47, 137, 495
LmnI	GCTCC	2 cut(s)	454, 653
Lsp1109I	GCAGC	5 cut(s)	1237, 1265, 1299, 1574, 1864
LweI	GCATC	4 cut(s)	568, 890, 1217, 1282
MabI	ACCWGGT	1 cut(s)	306
MaeI	CTAG	9 cut(s)	99, 126, 177, 294, 729, 887, 1155, 1215, 1686
MaeII	ACGT	1 cut(s)	1043
MaeIII	GTNAC	6 cut(s)	589, 771, 1094, 1193, 1325, 1849
MflI	RGATCY	2 cut(s)	959, 1007
MhlI	GDGCHC	3 cut(s)	59, 1231, 1765
MlyI	GAGTC	4 cut(s)	719, 1037, 1541, 1597
MmeI	TCCRAC	4 cut(s)	687, 745, 1204, 1365
Mph1103I	ATGCAT	2 cut(s)	583, 609
MseI	TTAA	3 cut(s)	462, 869, 1817
MslI	CAYNNNNRTG	2 cut(s)	778, 1368
MspA1I	CMGCKG	2 cut(s)	1312, 1877
MspR9I	CCNGG	4 cut(s)	308, 877, 1085, 1559
Mva1269I	GAATGC	2 cut(s)	604, 1739
MvaI	CCWGG	4 cut(s)	308, 877, 1085, 1559
MwoI	GCNNNNNNNGC	5 cut(s)	371, 391, 571, 853, 1250
NlaIV	GGNNCC	4 cut(s)	456, 520, 752, 1445
NmuCI	GTSAC	3 cut(s)	771, 1193, 1325
NsiI	ATGCAT	2 cut(s)	583, 609
NspI	RCATGY	2 cut(s)	1076, 1346
NspV	TTCGAA	2 cut(s)	331, 972
PagI	TCATGA	2 cut(s)	1284, 1660
PciSI	GCTCTTC	3 cut(s)	47, 137, 495
PctI	GAATGC	2 cut(s)	604, 1739
PfeI	GAWTC	4 cut(s)	204, 1375, 1388, 1800
PflFI	GACNNNGTC	1 cut(s)	1709
PflMI	CCANNNNNTGG	2 cut(s)	257, 1322
PkrI	GCNGC	6 cut(s)	226, 1252, 1255, 1314, 1589, 1879
PleI	GAGTC	4 cut(s)	718, 1036, 1540, 1597
PpsI	GAGTC	4 cut(s)	718, 1036, 1540, 1597
PpuMI	RGGWCCY	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	1765
Psp5II	RGGWCCY	1 cut(s)	750
Psp6I	CCWGG	4 cut(s)	306, 875, 1083, 1557
PspEI	GGTNACC	1 cut(s)	1325
PspGI	CCWGG	4 cut(s)	306, 875, 1083, 1557
PspN4I	GGNNCC	4 cut(s)	456, 520, 752, 1445
PspPI	GGNCC	6 cut(s)	167, 260, 519, 750, 1133, 1652
PspPPI	RGGWCCY	1 cut(s)	750
PsrI	GAACNNNNNNTAC	2 cut(s)	1765, 1797
PstI	CTGCAG	2 cut(s)	1255, 1427
PsuI	RGATCY	2 cut(s)	959, 1007
PsyI	GACNNNGTC	1 cut(s)	1709
PvuII	CAGCTG	2 cut(s)	1312, 1877
RsaI	GTAC	3 cut(s)	910, 1219, 1872
RsaNI	GTAC	3 cut(s)	909, 1218, 1871
RseI	CAYNNNNRTG	2 cut(s)	778, 1368
SacI	GAGCTC	1 cut(s)	1765
SapI	GCTCTTC	3 cut(s)	47, 137, 495
SaqAI	TTAA	3 cut(s)	462, 869, 1817
SatI	GCNGC	6 cut(s)	225, 1251, 1254, 1313, 1588, 1878
Sau96I	GGNCC	6 cut(s)	167, 260, 519, 750, 1133, 1652
SchI	GAGTC	4 cut(s)	719, 1037, 1541, 1597
ScrFI	CCNGG	4 cut(s)	308, 877, 1085, 1559
SduI	GDGCHC	3 cut(s)	59, 1231, 1765
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	4 cut(s)	568, 890, 1217, 1282
SfcI	CTRYAG	3 cut(s)	422, 1251, 1423
SfuI	TTCGAA	2 cut(s)	331, 972
SinI	GGWCC	5 cut(s)	167, 260, 519, 750, 1133
SmiMI	CAYNNNNRTG	2 cut(s)	778, 1368
SmlI	CTYRAG	3 cut(s)	401, 1067, 1647
SmoI	CTYRAG	3 cut(s)	401, 1067, 1647
SpeI	ACTAGT	2 cut(s)	293, 1214
SsiI	CCGC	2 cut(s)	225, 452
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	9 cut(s)	99, 126, 177, 294, 729, 887, 1155, 1215, 1686
SstI	GAGCTC	1 cut(s)	1765
StyD4I	CCNGG	4 cut(s)	306, 875, 1083, 1557
StyI	CCWWGG	3 cut(s)	811, 1001, 1486
TaaI	ACNGT	2 cut(s)	1512, 1734
TaiI	ACGT	1 cut(s)	1046
TaqI	TCGA	7 cut(s)	331, 972, 982, 997, 1729, 1743, 1798
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	4 cut(s)	204, 1375, 1388, 1800
Tru1I	TTAA	3 cut(s)	462, 869, 1817
Tru9I	TTAA	3 cut(s)	462, 869, 1817
TscAI	CASTG	4 cut(s)	270, 1024, 1057, 1327
TseFI	GTSAC	3 cut(s)	771, 1193, 1325
TseI	GCWGC	5 cut(s)	1250, 1253, 1312, 1587, 1877
Tsp45I	GTSAC	3 cut(s)	771, 1193, 1325
TspRI	CASTG	4 cut(s)	270, 1024, 1057, 1327
Tth111I	GACNNNGTC	1 cut(s)	1709
Van91I	CCANNNNNTGG	2 cut(s)	257, 1322
VpaK11BI	GGWCC	5 cut(s)	167, 260, 519, 750, 1133
XagI	CCTNNNNNAGG	1 cut(s)	1617
XapI	RAATTY	4 cut(s)	253, 716, 1349, 1664
XceI	RCATGY	2 cut(s)	1076, 1346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	761, 1881
XspI	CTAG	9 cut(s)	99, 126, 177, 294, 729, 887, 1155, 1215, 1686
Zsp2I	ATGCAT	2 cut(s)	583, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.