Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005918

Physical Location & Seq

Genomic Coordinates Reverse (-)

61403640 .. 61414236

Gene Structure 10597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG383100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGGAGCTCTCTCTTCATTTCAGAGTCGTTTCTTCCCTAGTTCTTTTGGGACTGGTTGGCTTCTTTCTTCATCTCTACAACACAGTCTGGTTGAAGTCCGTGAGGCTCCGAAGGAATCTCCAAATGCAAGGCATCAAAGGCCCTACACCTTCTTTACTATATGGGAATCTCGCTGAGATGCAGAAAATCCAACTCCAAGCTCAGAAGTCTCCAAATCACTCTGAATTTGTAGCCCACGACTACACTTCCAGCCTCTTCCCGTATTTCGAACACTGGCGAAAAGCATACGGTTTAATTTACACGTATTCAACAGGATTGAGGCAGCATTTATATGTGAACCAACCAGAGCTAGTGAAGGAAATGAACCAGTGTAATAGTTTGGATTTAGGTAAGCCTTCCTATGTAAGCAAGAGACTTGCTCCCATGCTTGGAAATGGAATTCTCAGATCCAATGGCATATTTTGGTTACAACAAAGAAAAATTGTTGCACCTGAGTTTTTCACAGACAAAGTCAAGGCGATGGTAGGGTTGATGTTGGAGTCGGCGCAACCATTGCTTAGAAAATGGGAGGAGTGTATTGAAGTACAAGGAGGTATGAGAGCAGAGATTCAAGTAGATGAGCATTTAAGGGGTTTCTCAGCTGATGTTATCGCAAGGGCTTGTTTTGGGAGTTCTTATTCTAAGGGCAAAGAGATTTTCTCAAAGCTTAGAAGTCTTCAGGAAATAATGTCTCATCAACCCTTCCTCTTTGGATCATTTTCTAATTTAGGAGGCTTGAAAAAGCAAAAGGAGATAAGTTGTTTAGAGAGAGAGATAGAGTCATTGATATGGGAAACTGTGAAAGAACGCGAACGAGAAGGGTTAGAGACTTCTTCGTCAGAAAAGGATCTATTGCAGTTAATATTAGTGGGAGCCATGAGTGACCAAAGCCTAGGCAAAGGCAAGGATTCATCCAAGCGATTCATAGTTGACAACTGCAAGAACATTTACTTTGCAGGGCATGAATCCACTGGTGTTGCTGCCTCTTGGTGTTTGATGCTACTCGCTTTACATCCCGAGTGGCAATCTCGAATCAGGACCGAGTTGGCAGAAGTTTGCCCCGATGGTCAGCTAGATGCTAATTCACTCCCTCAATTGAAAACGATAAATATGGTGATTCAAGAAGTCATGCGTCTATACCCACCAGCTGCTTTTGTGTCAAGAGAAGCACTTGAAGACACCCAGTGTTATAAACTACGACCTAGCGCTCTGCTAGGGTTTCGGAATCCTTCTCCTCTGGGCGGCGGGTTCTCGTTTTCTTGCTGTTGCTTGTCAATGGCGGTGATGGCAGATCTTGGTCTGCTTGTTTTGTTCTTCATTGCGTTGTGGGACGCTGAGGCGGTGTTGAGTTCAGGGGTTGCAAGCGTTGTTGTTTCTGCGCCCAAGCTCGACGGTGACATGAATGAGGCGACCTCCGGGAGGGAGTTGGCATCTAAATGGCAACTGAGCAGCGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGAAAGGTCGATTCCGATCGAGTCCATGGGAAGATGTTCTCTGGCGTGCAGGCGATCTTGATCTCCCGGACTGTGACAGAGCGCGGGTTTGCTCGGACGCAGGGACTATTGCTTCTGCTGGTGGTGCTCATCGGCAGATCGACGGTCAGTACGGAGGTAAAAGTGGCTGTCAATTTGCACCGGGGATTCCGGAGCTGAGGGAGGATCGGCTTTTCTCCGACCTGGGTAGATCGTTGGTGGGGATTATGGTGCGTCTCTGCGTATCGGAGAAGCTTACCTTTGATGGTGAGGATGCTTGGTGCAACGACGGGCCCTACCACGTCTTTGGTGGTCGCGGCTTGCTGGTTGGCGGCGGCGGTGTGCTGGTCCGGTGGGGTGGATCCTGTGGGGTGCTCTTAGCAATTTTTGCTTGGGCCCTCTGGGCTTCACTCTTTTCTGTCGACTTAGGCTGGGCCTTCAGTATCAGGGGGTCTCAAGCCGACGCCAAAACAAAGATACAGAACAAAAATCTCAACTTGGAGATTGCAGAGATCTCAAAGTATGCAACAACAACTCATCTGTTATCTTGGTCCCAGAATTCTGGGCTGCTCAGCATTGTTTCTGAATCTGAGAGTGAACTCTTAGTTTATAATGCCAGAAACCTTGAGCTCATGGGTTTCACTGATTCCCGGTTTGATGCTATTGGCATTGCTTCAAAACTATCATATATGGATTTTGGAGATACGGTTAACTATCAGGGCTTTGCCAGACTTGGCAAACACTGCGGCATTTGCTCACCACAGTTCACAATAGCTGGTAGTACTAGTACCAAAGATCATCAGACAAATGCTGCTGTTATGTCATCTGGAAATCCTTTACCAGAAAGAAGCAAGCTTCAACTGTTGCTTGGAGAGATAACATACCTCGGAGCCAGTAAATGCAGAAGAGCAAAAATCAATGGAGGAAGCTACAAAGCACCGCAAGAATTTGAGCATGATGCAACACTGGTATGGAGCAATGCTATGCTTTTCAACGATTCAAGTACCCTTTATTATAAAGAGGCTCGTTTGATAAGAAATCTAGCGACGAAGTTGTTTAATTCTTTGAAAACTGACCCTGAGAGCTTTGTGGAAATATCAAAATCTGGATGCAGAGTCTATCTCAGCCCACAAGAACTAGTGCAGAATAAGCAGAATAGTACTGGATACACAGAAAGCCTGCTGCAGTTTGTTAAAGATCTAGGGCCTACTGCTAATACATTTGCATGTTGGAAGTTACAAAGGTATGCAGAAGAAGCGGCTAACGTGGAAAGGGGTAAGAATGTCCAAGTAGCTAACATATCTTCTTTAGAGCAGAAGATACCGGCTGCAAAAGGTTATGGTTCTTCATCTTCTTCGTCAGCAGCATGGCTTTTCCAATTTATGTCTGGAGCAACTCAGAGCCCAGCCACTCACACAGGTTACTCTAGCAATGTGGAGGAGGCAGGCCAAGACTGGAAACGGTTCAGGCCAACAGAGGCACCACCACAGCCTGTTTCCAGCCGGCTGTTCCAGCCGCAATCAACATCGGCTGGGCCCTCACAGTGGGGAGACATTGGTGCATCAACCTCTAACGCAAAGCCTATAAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009690 GO:0009691 GO:0009987 GO:0010817 GO:0016491 GO:0018130 GO:0019438 GO:0033397 GO:0033398 GO:0033400 GO:0033466 GO:0034641 GO:0034754 GO:0042445 GO:0042446 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

1044

Amino Acids

115.3

Weight (kDa)

8.07

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	84 - 408	1.8e-41	Cytochrome P450
Bromodomain	PF00439	817 - 856	2.7e-06	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09360 FvH4_7g26330
malus_domestica	MD01G1172400.v1.1 MD04G1178300.v1.1 MD07G1238700.v1.1
prunus_persica	Prupe.2G267500_v2.0.a1 Prupe.6G298300_v2.0.a1
pyrus_communis	pycom01g18390 pycom07g21470
rosa_chinensis	RchiOBHm_Chr1g0372791 RchiOBHm_Chr3g0459751
rosa_laevigata	RLG00000025060 RLG00000026872
rosa_multiflora	Rmu_co8360863.1_g000001 Rmu_sc0000240.1_g000036 Rmu_ssc0000024.1_g000009
rosa_roxburghii	Rroxscaffold_6G00420000
rosa_rugosa	Rorug01G0374300 Rorug03G0038100
rosa_samantha	Rh1AG383100 Rh1BG346800 Rh1CG360100 Rh1DG377700 Rh3AG096600 Rh3BG099300 Rh3CG101200 Rh3DG100600
rosa_wichuraiana	Rw1G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1230, 2151, 2556
AasI	GACNNNNNNGTC	1 cut(s)	874
AccB1I	GGYRCC	1 cut(s)	3019
AccI	GTMKAC	1 cut(s)	1962
AccII	CGCG	3 cut(s)	849, 1606, 1857
AccIII	TCCGGA	1 cut(s)	1711
AclWI	GGATC	8 cut(s)	441, 760, 894, 1487, 1527, 1734, 1896, 1909
AcsI	RAATTY	4 cut(s)	224, 438, 2098, 2486
AcuI	CTGAAG	2 cut(s)	701, 1963
AcyI	GRCGYC	1 cut(s)	2004
AdeI	CACNNNGTG	1 cut(s)	1224
AfaI	GTAC	6 cut(s)	585, 1673, 2323, 2329, 2545, 2701
AfeI	AGCGCT	1 cut(s)	1246
AfiI	CCNNNNNNNGG	4 cut(s)	428, 1280, 1458, 3084
AflIII	ACRYGT	1 cut(s)	300
AhlI	ACTAGT	2 cut(s)	2324, 2677
AjiI	CACGTC	1 cut(s)	1843
AjnI	CCWGG	1 cut(s)	1743
Alw21I	GWGCWC	4 cut(s)	9, 1651, 1917, 2172
Alw26I	GTCTC	7 cut(s)	213, 406, 735, 860, 1781, 1998, 3084
AlwI	GGATC	8 cut(s)	441, 760, 894, 1487, 1527, 1734, 1896, 1909
Ama87I	CYCGRG	1 cut(s)	1055
Aor13HI	TCCGGA	1 cut(s)	1711
Aor51HI	AGCGCT	1 cut(s)	1246
AoxI	GGCC	8 cut(s)	139, 1832, 1935, 1974, 2744, 2986, 3008, 3074
ApaI	GGGCCC	3 cut(s)	1836, 1939, 3078
ApeKI	GCWGC	9 cut(s)	322, 1019, 1187, 1488, 2107, 2351, 2722, 2867, 2903
ApoI	RAATTY	4 cut(s)	224, 438, 2098, 2486
Asp700I	GAANNNNTTC	2 cut(s)	1557, 3002
AspA2I	CCTAGG	1 cut(s)	931
AspLEI	GCGC	4 cut(s)	547, 1247, 1420, 1606
AsuC2I	CCSGG	4 cut(s)	1456, 1589, 1704, 2191
AsuHPI	GGTGA	5 cut(s)	1165, 1333, 1445, 1820, 2289
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	1055
AvaII	GGWCC	3 cut(s)	1077, 1888, 2091
AvrII	CCTAGG	1 cut(s)	931
BaeGI	GKGCMC	3 cut(s)	1836, 1939, 3078
BamHI	GGATCC	1 cut(s)	1901
BanI	GGYRCC	1 cut(s)	3019
BanII	GRGCYC	6 cut(s)	9, 1836, 1939, 2172, 2945, 3078
BbsI	GAAGAC	2 cut(s)	707, 1221
Bbv12I	GWGCWC	4 cut(s)	9, 1651, 1917, 2172
BbvCI	CCTCAGC	2 cut(s)	1374, 1718
BbvI	GCAGC	9 cut(s)	334, 1006, 1174, 1500, 2094, 2338, 2709, 2854, 2915
BccI	CCATC	4 cut(s)	514, 1097, 1318, 1799
BciT130I	CCWGG	1 cut(s)	1745
BciVI	GTATCC	1 cut(s)	2699
BcnI	CCSGG	4 cut(s)	1456, 1589, 1704, 2191
BcoDI	GTCTC	7 cut(s)	213, 406, 735, 860, 1781, 1998, 3084
BcuI	ACTAGT	2 cut(s)	2324, 2677
BfmI	CTRYAG	1 cut(s)	2723
BfoI	RGCGCY	1 cut(s)	1248
BfuI	GTATCC	1 cut(s)	2699
BglI	GCCNNNNNGGC	1 cut(s)	1943
BglII	AGATCT	3 cut(s)	1330, 2052, 2737
BlnI	CCTAGG	1 cut(s)	931
BlpI	GCTNAGC	1 cut(s)	2111
BmcAI	AGTACT	2 cut(s)	2323, 2701
Bme1390I	CCNGG	5 cut(s)	1456, 1589, 1704, 1745, 2191
Bme18I	GGWCC	3 cut(s)	1077, 1888, 2091
BmeT110I	CYCGRG	1 cut(s)	1055
BmgBI	CACGTC	1 cut(s)	1843
BmiI	GGNNCC	9 cut(s)	107, 913, 1834, 1903, 1937, 2093, 2431, 3021, 3076
BmrFI	CCNGG	5 cut(s)	1456, 1589, 1704, 1745, 2191
BmrI	ACTGGG	1 cut(s)	1216
BmuI	ACTGGG	1 cut(s)	1216
BpiI	GAAGAC	2 cut(s)	707, 1221
BplI	GAGNNNNNCTC	8 cut(s)	403, 435, 683, 715, 1436, 1468, 2646, 2678
BpmI	CTGGAG	1 cut(s)	2949
Bpu10I	CCTNAGC	2 cut(s)	1374, 1718
Bpu1102I	GCTNAGC	1 cut(s)	2111
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	1980, 2186
BpuMI	CCSGG	4 cut(s)	1456, 1589, 1704, 2191
BsaAI	YACGTR	1 cut(s)	303
BsaBI	GATNNNNATC	2 cut(s)	1537, 1581
BsaHI	GRCGYC	1 cut(s)	2004
BsaI	GGTCTC	1 cut(s)	1998
BsaJI	CCNNGG	5 cut(s)	931, 1547, 1703, 1744, 2425
BsaWI	WCCGGW	3 cut(s)	1495, 1711, 1890
BsaXI	ACNNNNNCTCC	2 cut(s)	2232, 2262
Bsc4I	CCNNNNNNNGG	4 cut(s)	428, 1280, 1458, 3084
Bse118I	RCCGGY	2 cut(s)	2863, 3042
Bse1I	ACTGG	9 cut(s)	57, 278, 367, 1015, 1222, 2433, 2511, 2707, 2999
Bse3DI	GCAATG	5 cut(s)	551, 1356, 2208, 2524, 2977
Bse8I	GATNNNNATC	2 cut(s)	1537, 1581
BseAI	TCCGGA	1 cut(s)	1711
BseBI	CCWGG	1 cut(s)	1745
BseDI	CCNNGG	5 cut(s)	931, 1547, 1703, 1744, 2425
BseGI	GGATG	4 cut(s)	950, 1051, 1819, 2654
BseJI	GATNNNNATC	2 cut(s)	1537, 1581
BseLI	CCNNNNNNNGG	4 cut(s)	428, 1280, 1458, 3084
BseMI	GCAATG	5 cut(s)	551, 1356, 2208, 2524, 2977
BseNI	ACTGG	9 cut(s)	57, 278, 367, 1015, 1222, 2433, 2511, 2707, 2999
BseRI	GAGGAG	3 cut(s)	584, 1263, 2993
BseSI	GKGCMC	3 cut(s)	1836, 1939, 3078
BseXI	GCAGC	9 cut(s)	334, 1006, 1174, 1500, 2094, 2338, 2709, 2854, 2915
BseYI	CCCAGC	3 cut(s)	1971, 2944, 3071
BsgI	GTGCAG	2 cut(s)	1590, 2702
Bsh1236I	CGCG	3 cut(s)	849, 1606, 1857
Bsh1285I	CGRYCG	1 cut(s)	1541
BshFI	GGCC	8 cut(s)	141, 1834, 1937, 1976, 2746, 2988, 3010, 3076
BshNI	GGYRCC	1 cut(s)	3019
BsiEI	CGRYCG	1 cut(s)	1541
BsiHKAI	GWGCWC	4 cut(s)	9, 1651, 1917, 2172
BsiHKCI	CYCGRG	1 cut(s)	1055
BsiSI	CCGG	9 cut(s)	1455, 1496, 1589, 1703, 1712, 1891, 2191, 2864, 3043
BslFI	GGGAC	4 cut(s)	63, 1382, 1639, 2077
BslI	CCNNNNNNNGG	4 cut(s)	428, 1280, 1458, 3084
BsmAI	GTCTC	7 cut(s)	213, 406, 735, 860, 1781, 1998, 3084
BsmBI	CGTCTC	1 cut(s)	1781
BsmFI	GGGAC	4 cut(s)	63, 1382, 1639, 2077
BsnI	GGCC	8 cut(s)	141, 1834, 1937, 1976, 2746, 2988, 3010, 3076
Bso31I	GGTCTC	1 cut(s)	1998
BsoBI	CYCGRG	1 cut(s)	1055
Bsp119I	TTCGAA	1 cut(s)	267
Bsp120I	GGGCCC	3 cut(s)	1832, 1935, 3074
Bsp1286I	GDGCHC	8 cut(s)	9, 1651, 1836, 1917, 1939, 2172, 2945, 3078
Bsp13I	TCCGGA	1 cut(s)	1711
Bsp1720I	GCTNAGC	1 cut(s)	2111
Bsp19I	CCATGG	1 cut(s)	1547
BspANI	GGCC	8 cut(s)	141, 1834, 1937, 1976, 2746, 2988, 3010, 3076
BspEI	TCCGGA	1 cut(s)	1711
BspFNI	CGCG	3 cut(s)	849, 1606, 1857
BspLI	GGNNCC	9 cut(s)	107, 913, 1834, 1903, 1937, 2093, 2431, 3021, 3076
BspMAI	CTGCAG	1 cut(s)	2727
BspPI	GGATC	8 cut(s)	441, 760, 894, 1487, 1527, 1734, 1896, 1909
BspQI	GCTCTTC	1 cut(s)	2440
BspT104I	TTCGAA	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	3019
BspTNI	GGTCTC	1 cut(s)	1998
BsrDI	GCAATG	5 cut(s)	551, 1356, 2208, 2524, 2977
BsrFI	RCCGGY	2 cut(s)	2863, 3042
BsrI	ACTGG	9 cut(s)	57, 278, 367, 1015, 1222, 2433, 2511, 2707, 2999
BssAI	RCCGGY	2 cut(s)	2863, 3042
BssECI	CCNNGG	5 cut(s)	931, 1547, 1703, 1744, 2425
BssNI	GRCGYC	1 cut(s)	2004
BssT1I	CCWWGG	2 cut(s)	931, 1547
Bst2UI	CCWGG	1 cut(s)	1745
Bst6I	CTCTTC	3 cut(s)	18, 260, 2440
BstACI	GRCGYC	1 cut(s)	2004
BstAPI	GCANNNNNTGC	3 cut(s)	553, 1928, 2283
BstBAI	YACGTR	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	8 cut(s)	1402, 1569, 1573, 1862, 2393, 2720, 2986, 3044
BstDSI	CCRYGG	1 cut(s)	1547
BstENI	CCTNNNNNAGG	1 cut(s)	1456
BstF5I	GGATG	4 cut(s)	950, 1051, 1819, 2654
BstFNI	CGCG	3 cut(s)	849, 1606, 1857
BstH2I	RGCGCY	1 cut(s)	1248
BstHHI	GCGC	4 cut(s)	547, 1247, 1420, 1606
BstMAI	GTCTC	7 cut(s)	213, 406, 735, 860, 1781, 1998, 3084
BstMCI	CGRYCG	1 cut(s)	1541
BstNI	CCWGG	1 cut(s)	1745
BstNSI	RCATGY	1 cut(s)	2769
BstSCI	CCNGG	5 cut(s)	1454, 1587, 1702, 1743, 2189
BstSFI	CTRYAG	1 cut(s)	2723
BstSLI	GKGCMC	3 cut(s)	1836, 1939, 3078
BstUI	CGCG	3 cut(s)	849, 1606, 1857
BstV1I	GCAGC	9 cut(s)	334, 1006, 1174, 1500, 2094, 2338, 2709, 2854, 2915
BstV2I	GAAGAC	2 cut(s)	707, 1221
BstX2I	RGATCY	6 cut(s)	446, 886, 1330, 1901, 2052, 2737
BstXI	CCANNNNNNTGG	2 cut(s)	1847, 2102
BstYI	RGATCY	6 cut(s)	446, 886, 1330, 1901, 2052, 2737
BsuI	GTATCC	1 cut(s)	2699
BsuRI	GGCC	8 cut(s)	141, 1834, 1937, 1976, 2746, 2988, 3010, 3076
BtgI	CCRYGG	1 cut(s)	1547
BtgZI	GCGATG	1 cut(s)	533
BtrI	CACGTC	1 cut(s)	1843
BtsCI	GGATG	4 cut(s)	950, 1051, 1819, 2654
BtsI	GCAGTG	1 cut(s)	2281
BtsIMutI	CAGTG	8 cut(s)	271, 374, 1008, 1229, 2181, 2281, 2504, 3089
Cac8I	GCNNGC	8 cut(s)	1402, 1569, 1573, 1862, 2393, 2720, 2986, 3044
CfoI	GCGC	4 cut(s)	547, 1247, 1420, 1606
Cfr10I	RCCGGY	2 cut(s)	2863, 3042
CseI	GACGC	5 cut(s)	1160, 1379, 1628, 1763, 2012
Csp6I	GTAC	6 cut(s)	584, 1672, 2322, 2328, 2544, 2700
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviQI	GTAC	6 cut(s)	584, 1672, 2322, 2328, 2544, 2700
DraIII	CACNNNGTG	1 cut(s)	1224
DrdI	GACNNNNNNGTC	1 cut(s)	874
DseDI	GACNNNNNNGTC	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	18, 260, 2440
EarI	CTCTTC	3 cut(s)	18, 260, 2440
Ecl136II	GAGCTC	2 cut(s)	7, 2170
Eco130I	CCWWGG	2 cut(s)	931, 1547
Eco24I	GRGCYC	6 cut(s)	9, 1836, 1939, 2172, 2945, 3078
Eco31I	GGTCTC	1 cut(s)	1998
Eco47I	GGWCC	3 cut(s)	1077, 1888, 2091
Eco47III	AGCGCT	1 cut(s)	1246
Eco53kI	GAGCTC	2 cut(s)	7, 2170
Eco57I	CTGAAG	2 cut(s)	701, 1963
Eco88I	CYCGRG	1 cut(s)	1055
EcoICRI	GAGCTC	2 cut(s)	7, 2170
EcoNI	CCTNNNNNAGG	1 cut(s)	1456
EcoO109I	RGGNCCY	5 cut(s)	140, 1833, 1936, 2744, 3075
EcoRI	GAATTC	2 cut(s)	438, 2098
EcoRII	CCWGG	1 cut(s)	1743
EcoT14I	CCWWGG	2 cut(s)	931, 1547
EcoT38I	GRGCYC	6 cut(s)	9, 1836, 1939, 2172, 2945, 3078
ErhI	CCWWGG	2 cut(s)	931, 1547
Esp3I	CGTCTC	1 cut(s)	1781
FalI	AAGNNNNNCTT	2 cut(s)	1784, 1816
FaqI	GGGAC	4 cut(s)	63, 1382, 1639, 2077
FauI	CCCGC	2 cut(s)	1277, 1599
FblI	GTMKAC	1 cut(s)	1962
FokI	GGATG	4 cut(s)	937, 1038, 1826, 2661
FriOI	GRGCYC	6 cut(s)	9, 1836, 1939, 2172, 2945, 3078
GlaI	GCGC	4 cut(s)	546, 1246, 1419, 1605
GsaI	CCCAGC	3 cut(s)	1975, 2948, 3075
GsuI	CTGGAG	1 cut(s)	2949
HaeII	RGCGCY	1 cut(s)	1248
HaeIII	GGCC	8 cut(s)	141, 1834, 1937, 1976, 2746, 2988, 3010, 3076
HapII	CCGG	9 cut(s)	1455, 1496, 1589, 1703, 1712, 1891, 2191, 2864, 3043
HgaI	GACGC	5 cut(s)	1160, 1379, 1628, 1763, 2012
HhaI	GCGC	4 cut(s)	547, 1247, 1420, 1606
Hin1I	GRCGYC	1 cut(s)	2004
Hin6I	GCGC	4 cut(s)	545, 1245, 1418, 1604
HinP1I	GCGC	4 cut(s)	545, 1245, 1418, 1604
HincII	GTYRAC	3 cut(s)	970, 1963, 2251
HindII	GTYRAC	3 cut(s)	970, 1963, 2251
HindIII	AAGCTT	3 cut(s)	704, 1793, 2393
HpaI	GTTAAC	1 cut(s)	2251
HpaII	CCGG	9 cut(s)	1455, 1496, 1589, 1703, 1712, 1891, 2191, 2864, 3043
HphI	GGTGA	5 cut(s)	1165, 1333, 1445, 1820, 2289
Hpy166II	GTNNAC	6 cut(s)	337, 970, 1963, 2138, 2251, 2307
Hpy8I	GTNNAC	6 cut(s)	337, 970, 1963, 2138, 2251, 2307
Hpy99I	CGWCG	5 cut(s)	1433, 1667, 1832, 2006, 2590
HpyAV	CCTTC	8 cut(s)	105, 159, 349, 405, 751, 851, 1278, 1987
HpyCH4IV	ACGT	3 cut(s)	302, 1842, 2805
HpySE526I	ACGT	3 cut(s)	302, 1842, 2805
Hsp92I	GRCGYC	1 cut(s)	2004
HspAI	GCGC	4 cut(s)	545, 1245, 1418, 1604
Kpn2I	TCCGGA	1 cut(s)	1711
KroI	GCCGGC	1 cut(s)	3042
KroNI	GCCGGC	1 cut(s)	3044
KspAI	GTTAAC	1 cut(s)	2251
LguI	GCTCTTC	1 cut(s)	2440
LmnI	GCTCC	8 cut(s)	4, 111, 424, 911, 1714, 2429, 2514, 2930
Lsp1109I	GCAGC	9 cut(s)	334, 1006, 1174, 1500, 2094, 2338, 2709, 2854, 2915
MaeII	ACGT	3 cut(s)	302, 1842, 2805
MaeIII	GTNAC	6 cut(s)	465, 920, 1433, 1595, 2775, 2960
MfeI	CAATTG	1 cut(s)	1133
MflI	RGATCY	6 cut(s)	446, 886, 1330, 1901, 2052, 2737
MhlI	GDGCHC	8 cut(s)	9, 1651, 1836, 1917, 1939, 2172, 2945, 3078
MlyI	GAGTC	5 cut(s)	33, 548, 827, 1552, 2664
MmeI	TCCRAC	4 cut(s)	214, 516, 1764, 2750
MroI	TCCGGA	1 cut(s)	1711
MroNI	GCCGGC	1 cut(s)	3042
MroXI	GAANNNNTTC	2 cut(s)	1557, 3002
MseI	TTAA	6 cut(s)	293, 626, 899, 2250, 2598, 2733
MslI	CAYNNNNRTG	5 cut(s)	330, 826, 1474, 2509, 2764
MspA1I	CMGCKG	2 cut(s)	641, 1187
MspI	CCGG	9 cut(s)	1455, 1496, 1589, 1703, 1712, 1891, 2191, 2864, 3043
MspR9I	CCNGG	5 cut(s)	1456, 1589, 1704, 1745, 2191
MunI	CAATTG	1 cut(s)	1133
MvaI	CCWGG	1 cut(s)	1745
MvnI	CGCG	3 cut(s)	849, 1606, 1857
NaeI	GCCGGC	1 cut(s)	3044
NciI	CCSGG	4 cut(s)	1456, 1589, 1704, 2191
NcoI	CCATGG	1 cut(s)	1547
NgoMIV	GCCGGC	1 cut(s)	3042
NlaIV	GGNNCC	9 cut(s)	107, 913, 1834, 1903, 1937, 2093, 2431, 3021, 3076
NmuCI	GTSAC	3 cut(s)	920, 1433, 1595
NspI	RCATGY	1 cut(s)	2769
NspV	TTCGAA	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	2440
PcsI	WCGNNNNNNNCGW	1 cut(s)	1528
PdiI	GCCGGC	1 cut(s)	3044
PdmI	GAANNNNTTC	2 cut(s)	1557, 3002
PflFI	GACNNNGTC	1 cut(s)	509
PfoI	TCCNGGA	2 cut(s)	1454, 1587
Ple19I	CGATCG	1 cut(s)	1541
PleI	GAGTC	5 cut(s)	32, 547, 826, 1551, 2663
PpsI	GAGTC	5 cut(s)	32, 547, 826, 1551, 2663
Ppu21I	YACGTR	1 cut(s)	303
PsiI	TTATAA	3 cut(s)	1230, 2151, 2556
Psp124BI	GAGCTC	2 cut(s)	9, 2172
Psp6I	CCWGG	1 cut(s)	1743
PspFI	CCCAGC	3 cut(s)	1971, 2944, 3071
PspGI	CCWGG	1 cut(s)	1743
PspN4I	GGNNCC	9 cut(s)	107, 913, 1834, 1903, 1937, 2093, 2431, 3021, 3076
PspOMI	GGGCCC	3 cut(s)	1832, 1935, 3074
PstI	CTGCAG	1 cut(s)	2727
PsuI	RGATCY	6 cut(s)	446, 886, 1330, 1901, 2052, 2737
PsyI	GACNNNGTC	1 cut(s)	509
PvuI	CGATCG	1 cut(s)	1541
PvuII	CAGCTG	2 cut(s)	641, 1187
RsaI	GTAC	6 cut(s)	585, 1673, 2323, 2329, 2545, 2701
RsaNI	GTAC	6 cut(s)	584, 1672, 2322, 2328, 2544, 2700
RseI	CAYNNNNRTG	5 cut(s)	330, 826, 1474, 2509, 2764
SacI	GAGCTC	2 cut(s)	9, 2172
SalI	GTCGAC	1 cut(s)	1961
SapI	GCTCTTC	1 cut(s)	2440
SaqAI	TTAA	6 cut(s)	293, 626, 899, 2250, 2598, 2733
ScaI	AGTACT	2 cut(s)	2323, 2701
SchI	GAGTC	5 cut(s)	33, 548, 827, 1552, 2664
ScrFI	CCNGG	5 cut(s)	1456, 1589, 1704, 1745, 2191
SduI	GDGCHC	8 cut(s)	9, 1651, 1836, 1917, 1939, 2172, 2945, 3078
SfcI	CTRYAG	1 cut(s)	2723
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	3 cut(s)	1077, 1888, 2091
SmiMI	CAYNNNNRTG	5 cut(s)	330, 826, 1474, 2509, 2764
SmlI	CTYRAG	2 cut(s)	1995, 2165
SmoI	CTYRAG	2 cut(s)	1995, 2165
SpeI	ACTAGT	2 cut(s)	2324, 2677
SspI	AATATT	1 cut(s)	903
SstI	GAGCTC	2 cut(s)	9, 2172
StyD4I	CCNGG	5 cut(s)	1454, 1587, 1702, 1743, 2189
StyI	CCWWGG	2 cut(s)	931, 1547
TaiI	ACGT	3 cut(s)	305, 1845, 2808
TaqI	TCGA	7 cut(s)	267, 1069, 1428, 1531, 1541, 1662, 1962
TaqII	GACCGA	1 cut(s)	1094
TatI	WGTACW	3 cut(s)	583, 2321, 2699
TauI	GCSGC	7 cut(s)	1284, 1860, 1875, 1878, 2289, 2801, 3058
Tru1I	TTAA	6 cut(s)	293, 626, 899, 2250, 2598, 2733
Tru9I	TTAA	6 cut(s)	293, 626, 899, 2250, 2598, 2733
TscAI	CASTG	8 cut(s)	278, 374, 1015, 1229, 2188, 2288, 2511, 3089
TseFI	GTSAC	3 cut(s)	920, 1433, 1595
TseI	GCWGC	9 cut(s)	322, 1019, 1187, 1488, 2107, 2351, 2722, 2867, 2903
Tsp45I	GTSAC	3 cut(s)	920, 1433, 1595
TspDTI	ATGAA	9 cut(s)	5, 59, 377, 939, 952, 1017, 1345, 1454, 2877
TspGWI	ACGGA	2 cut(s)	88, 1689
TspRI	CASTG	8 cut(s)	278, 374, 1015, 1229, 2188, 2288, 2511, 3089
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	3 cut(s)	1077, 1888, 2091
XagI	CCTNNNNNAGG	1 cut(s)	1456
XapI	RAATTY	4 cut(s)	224, 438, 2098, 2486
XceI	RCATGY	1 cut(s)	2769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1847, 2924
XmaJI	CCTAGG	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	1962
XmnI	GAANNNNTTC	2 cut(s)	1557, 3002
ZrmI	AGTACT	2 cut(s)	2323, 2701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.