Rh1CG360100

platelet degranulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005918
Physical Location & Seq
Reverse (-)
63309733 .. 63312575
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG360100.1

Sequence Viewer

Length: 1293 bp
ATGATGTGGAATGGGGACCGTAGACAGAGTTTACGTATATTTGCACTTGAAACACAGAAGAAGCAGCAAAAAGAGAACCAGAATCTGAGTCAGGGAAAAAAGGCTGGTAGTACTAGTACCAAAGATCATCAGACAAATGCTGCTGTTATGTCATCTGGAAATCCTTTACCAGAAAGAAGCAAGCTTCAACTGTTGCTTGGAGAGATAACATACCTCGGAGCCAGTAAATGCAGAAGAGGTTTGTCTACTTTATTTAGGGTAGAACCAATGGATTTTGGCATGATTACAGCAAAACTCAATGGAGGAAGCTACAAAGCACTGCAAGAATTTGAGCATGATGCAACACTGGTATGGAGCAATGCTATGCTTTTCAACGATTCAAGTACCCTTTATTATAAAGAGGGTCTTTCGATAAGAAATCTAGCGACGAAGTTGTTTAATTCTTTGAAAACTGACCCTGAGAGCTTTGTGGAAATATCAAAATCTGGATGCAGAGGTGGAAGAAGATCCAAATATTCTGAAGTAGATCAATGCTATACCTACCGGCCTCTGAATAAATTGCTCAATGAAAATGAGTCAATAACATCTACAGTCTATCTCAGCCCACAAGAACTAGTGCAGAATAAGCAGAATAGTACTGGATACACAGAAAGCCTGCTGCAGTTTGTTAAAGATCTAGGGCCTACTGCTAATACATTTGCATGTTGCAAGTTACAAAGGTATGCAGAAGAAGCGGCTAACGTGGAAAGGGTATTAACAGCAGATCAAGACACTTGGGGTTTCCACTTTATGAATGCCTTACTTGGATATGGGAGTTCTGAATGGGACACATACAGTAACCTCGGGGGAAAACCAGTTCGAACTATGCTTGATCAGGACAATGGGAATTCTGACTCTACCAGATCCTTATTTGGAAGTTCCAACTTATCTGCTCAGTACAAGACTACAAGCATCCACTCCAGTGGAAAATCTGGTAAGAATGTCCAAGTAGCTAACATATCTTCTTTAGAGCAGAAGCTACCGGCTGCAAAAGGTTATGGTTCTTCATCTTCTTCGTCAGCAGCATGGCTTTTCCAATTTATGTCTGGAGCAACTCAGAGCCCAGCCACTCGCACAAGTTACTCTAGCAATGTGGAGGAGGCAGGCCAAGACTGGAAACGGTTCAGGCCAACAGAGGCACCACCACAGCCTGTTTCTAGCCTGCTGTTCCAGCTGCAATCAACATCGGCTGGGCCCTCACAGTGGGGAGACATTGGTGCATCAGCCTCTAACGCAAAGCCTATTAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

430

Amino Acids

47.34

Weight (kDa)

9.06

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 88 - 134 2.9e-10 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 1177
AccI GTMKAC 2 cut(s) 22, 245
AciI CCGC 1 cut(s) 734
AclWI GGATC 2 cut(s) 501, 897
AcsI RAATTY 2 cut(s) 326, 886
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 5 cut(s) 112, 118, 385, 637, 938
AfiI CCNNNNNNNGG 1 cut(s) 1242
AgsI TTSAA 5 cut(s) 50, 188, 373, 381, 448
AhlI ACTAGT 2 cut(s) 113, 613
AleI CACNNNNGTG 1 cut(s) 960
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
AluBI AGCT 6 cut(s) 184, 309, 465, 992, 1018, 1213
AluI AGCT 6 cut(s) 184, 309, 465, 992, 1018, 1213
Alw26I GTCTC 1 cut(s) 1242
AlwI GGATC 2 cut(s) 501, 897
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 5 cut(s) 545, 680, 1144, 1166, 1232
ApaI GGGCCC 1 cut(s) 1236
ApeKI GCWGC 6 cut(s) 64, 140, 658, 1025, 1061, 1213
ApoI RAATTY 2 cut(s) 326, 886
Asp700I GAANNNNTTC 1 cut(s) 1160
AspS9I GGNCC 4 cut(s) 16, 680, 1232, 1233
AsuII TTCGAA 1 cut(s) 859
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 1236
BanI GGYRCC 1 cut(s) 1177
BanII GRGCYC 2 cut(s) 1103, 1236
BbvI GCAGC 6 cut(s) 76, 127, 645, 1012, 1073, 1200
BciVI GTATCC 1 cut(s) 635
BclI TGATCA 1 cut(s) 871
BcoDI GTCTC 1 cut(s) 1242
BcuI ACTAGT 2 cut(s) 113, 613
BfaI CTAG 6 cut(s) 114, 422, 614, 677, 1125, 1197
BfmI CTRYAG 2 cut(s) 588, 659
BfuI GTATCC 1 cut(s) 635
BglII AGATCT 1 cut(s) 673
BisI GCNGC 7 cut(s) 65, 141, 659, 735, 1026, 1062, 1214
BlsI GCNGC 7 cut(s) 66, 142, 660, 736, 1027, 1063, 1215
BmcAI AGTACT 2 cut(s) 112, 637
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 4 cut(s) 16, 680, 1232, 1233
BmiI GGNNCC 4 cut(s) 17, 220, 1179, 1234
BmsI GCATC 4 cut(s) 328, 479, 960, 1268
BpmI CTGGAG 2 cut(s) 943, 1107
Bpu14I TTCGAA 1 cut(s) 859
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 214, 841
Bsc4I CCNNNNNNNGG 1 cut(s) 1242
Bse118I RCCGGY 2 cut(s) 543, 1021
Bse1I ACTGG 6 cut(s) 222, 351, 643, 854, 960, 1157
Bse3DI GCAATG 2 cut(s) 364, 1135
BseDI CCNNGG 2 cut(s) 214, 841
BseGI GGATG 2 cut(s) 494, 951
BseLI CCNNNNNNNGG 1 cut(s) 1242
BseMI GCAATG 2 cut(s) 364, 1135
BseMII CTCAG 5 cut(s) 77, 450, 613, 947, 1109
BseNI ACTGG 6 cut(s) 222, 351, 643, 854, 960, 1157
BseRI GAGGAG 1 cut(s) 1151
BseSI GKGCMC 1 cut(s) 1236
BseXI GCAGC 6 cut(s) 76, 127, 645, 1012, 1073, 1200
BseYI CCCAGC 2 cut(s) 1102, 1229
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 5 cut(s) 547, 682, 1146, 1168, 1234
BshNI GGYRCC 1 cut(s) 1177
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 2 cut(s) 544, 1022
BslFI GGGAC 2 cut(s) 29, 839
BslI CCNNNNNNNGG 1 cut(s) 1242
BsmAI GTCTC 1 cut(s) 1242
BsmFI GGGAC 2 cut(s) 29, 839
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 5 cut(s) 547, 682, 1146, 1168, 1234
BsoBI CYCGRG 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 859
Bsp120I GGGCCC 1 cut(s) 1232
Bsp1286I GDGCHC 2 cut(s) 1103, 1236
Bsp143I GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
BspACI CCGC 1 cut(s) 734
BspANI GGCC 5 cut(s) 547, 682, 1146, 1168, 1234
BspCNI CTCAG 5 cut(s) 78, 451, 612, 946, 1108
BspLI GGNNCC 4 cut(s) 17, 220, 1179, 1234
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 2 cut(s) 501, 897
BspT104I TTCGAA 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 1177
BsrDI GCAATG 2 cut(s) 364, 1135
BsrFI RCCGGY 2 cut(s) 543, 1021
BsrI ACTGG 6 cut(s) 222, 351, 643, 854, 960, 1157
BssAI RCCGGY 2 cut(s) 543, 1021
BssECI CCNNGG 2 cut(s) 214, 841
BssMI GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
Bst4CI ACNGT 6 cut(s) 20, 192, 592, 836, 1161, 1242
Bst6I CTCTTC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 182, 656, 1144, 1202
BstDEI CTNAG 5 cut(s) 86, 459, 599, 933, 1095
BstF5I GGATG 2 cut(s) 494, 951
BstKTI GATC 7 cut(s) 127, 509, 529, 676, 766, 874, 905
BstMAI GTCTC 1 cut(s) 1242
BstMBI GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
BstMWI GCNNNNNNNGC 4 cut(s) 625, 731, 1210, 1271
BstNSI RCATGY 1 cut(s) 705
BstSFI CTRYAG 2 cut(s) 588, 659
BstSLI GKGCMC 1 cut(s) 1236
BstSNI TACGTA 1 cut(s) 35
BstV1I GCAGC 6 cut(s) 76, 127, 645, 1012, 1073, 1200
BstX2I RGATCY 3 cut(s) 506, 673, 902
BstXI CCANNNNNNTGG 1 cut(s) 962
BstYI RGATCY 3 cut(s) 506, 673, 902
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 5 cut(s) 547, 682, 1146, 1168, 1234
BtsCI GGATG 2 cut(s) 494, 951
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 4 cut(s) 317, 344, 967, 1247
Cac8I GCNNGC 4 cut(s) 182, 656, 1144, 1202
CaiI CAGNNNCTG 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 543, 1021
Cfr13I GGNCC 4 cut(s) 16, 680, 1232, 1233
Csp6I GTAC 5 cut(s) 111, 117, 384, 636, 937
CviAII CATG 4 cut(s) 280, 335, 702, 1065
CviQI GTAC 5 cut(s) 111, 117, 384, 636, 937
DdeI CTNAG 5 cut(s) 86, 459, 599, 933, 1095
DpnI GATC 7 cut(s) 126, 508, 528, 675, 765, 873, 904
DpnII GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco105I TACGTA 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 1103, 1236
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 842
EcoO109I RGGNCCY 2 cut(s) 680, 1233
EcoRI GAATTC 1 cut(s) 886
EcoT38I GRGCYC 2 cut(s) 1103, 1236
FaeI CATG 4 cut(s) 283, 338, 705, 1068
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 2 cut(s) 29, 839
FatI CATG 4 cut(s) 279, 334, 701, 1064
FbaI TGATCA 1 cut(s) 871
FblI GTMKAC 2 cut(s) 22, 245
Fnu4HI GCNGC 7 cut(s) 65, 141, 659, 735, 1026, 1062, 1214
FokI GGATG 2 cut(s) 501, 938
FriOI GRGCYC 2 cut(s) 1103, 1236
Fsp4HI GCNGC 7 cut(s) 65, 141, 659, 735, 1026, 1062, 1214
FspBI CTAG 6 cut(s) 114, 422, 614, 677, 1125, 1197
GluI GCNGC 7 cut(s) 65, 141, 659, 735, 1026, 1062, 1214
GsaI CCCAGC 2 cut(s) 1106, 1233
GsuI CTGGAG 2 cut(s) 943, 1107
HaeIII GGCC 5 cut(s) 547, 682, 1146, 1168, 1234
HapII CCGG 2 cut(s) 544, 1022
Hin1II CATG 4 cut(s) 283, 338, 705, 1068
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 82, 88, 377, 575, 893
HpaII CCGG 2 cut(s) 544, 1022
Hpy166II GTNNAC 3 cut(s) 23, 32, 246
Hpy188I TCNGA 8 cut(s) 87, 132, 218, 520, 552, 820, 892, 1098
Hpy188III TCNNGA 5 cut(s) 156, 486, 767, 875, 1086
Hpy8I GTNNAC 3 cut(s) 23, 32, 246
Hpy99I CGWCG 1 cut(s) 430
HpyCH4III ACNGT 6 cut(s) 20, 192, 592, 836, 1161, 1242
HpyCH4IV ACGT 2 cut(s) 34, 741
HpyF10VI GCNNNNNNNGC 4 cut(s) 625, 731, 1210, 1271
HpyF3I CTNAG 5 cut(s) 86, 459, 599, 933, 1095
HpySE526I ACGT 2 cut(s) 34, 741
Hsp92II CATG 4 cut(s) 283, 338, 705, 1068
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
LmnI GCTCC 3 cut(s) 218, 354, 1088
Lsp1109I GCAGC 6 cut(s) 76, 127, 645, 1012, 1073, 1200
LweI GCATC 4 cut(s) 328, 479, 960, 1268
MaeI CTAG 6 cut(s) 114, 422, 614, 677, 1125, 1197
MaeII ACGT 2 cut(s) 34, 741
MaeIII GTNAC 3 cut(s) 711, 836, 1118
MalI GATC 7 cut(s) 126, 508, 528, 675, 765, 873, 904
MboI GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
MboII GAAGA 9 cut(s) 70, 246, 513, 516, 740, 993, 1035, 1041, 1044
MflI RGATCY 3 cut(s) 506, 673, 902
MhlI GDGCHC 2 cut(s) 1103, 1236
MluCI AATT 5 cut(s) 326, 439, 557, 886, 1076
MlyI GAGTC 3 cut(s) 97, 584, 887
MmeI TCCRAC 1 cut(s) 945
MroXI GAANNNNTTC 1 cut(s) 1160
MseI TTAA 3 cut(s) 438, 669, 755
MslI CAYNNNNRTG 3 cut(s) 349, 700, 960
MspA1I CMGCKG 1 cut(s) 1213
MspI CCGG 2 cut(s) 544, 1022
Mva1269I GAATGC 1 cut(s) 799
MwoI GCNNNNNNNGC 4 cut(s) 625, 731, 1210, 1271
NdeII GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
NlaIII CATG 4 cut(s) 283, 338, 705, 1068
NlaIV GGNNCC 4 cut(s) 17, 220, 1179, 1234
NspI RCATGY 1 cut(s) 705
NspV TTCGAA 1 cut(s) 859
OliI CACNNNNGTG 1 cut(s) 960
PctI GAATGC 1 cut(s) 799
PdmI GAANNNNTTC 1 cut(s) 1160
PfeI GAWTC 2 cut(s) 82, 377
PkrI GCNGC 7 cut(s) 66, 142, 660, 736, 1027, 1063, 1215
PleI GAGTC 3 cut(s) 96, 583, 887
PpsI GAGTC 3 cut(s) 96, 583, 887
Ppu21I YACGTR 1 cut(s) 35
PsiI TTATAA 1 cut(s) 396
PspFI CCCAGC 2 cut(s) 1102, 1229
PspN4I GGNNCC 4 cut(s) 17, 220, 1179, 1234
PspOMI GGGCCC 1 cut(s) 1232
PspPI GGNCC 4 cut(s) 16, 680, 1232, 1233
PstI CTGCAG 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 3 cut(s) 506, 673, 902
PvuII CAGCTG 1 cut(s) 1213
RsaI GTAC 5 cut(s) 112, 118, 385, 637, 938
RsaNI GTAC 5 cut(s) 111, 117, 384, 636, 937
RseI CAYNNNNRTG 3 cut(s) 349, 700, 960
SaqAI TTAA 3 cut(s) 438, 669, 755
SatI GCNGC 7 cut(s) 65, 141, 659, 735, 1026, 1062, 1214
Sau3AI GATC 7 cut(s) 124, 506, 526, 673, 763, 871, 902
Sau96I GGNCC 4 cut(s) 16, 680, 1232, 1233
ScaI AGTACT 2 cut(s) 112, 637
SchI GAGTC 3 cut(s) 97, 584, 887
SduI GDGCHC 2 cut(s) 1103, 1236
SfaNI GCATC 4 cut(s) 328, 479, 960, 1268
SfcI CTRYAG 2 cut(s) 588, 659
SfuI TTCGAA 1 cut(s) 859
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 3 cut(s) 349, 700, 960
SnaBI TACGTA 1 cut(s) 35
SpeI ACTAGT 2 cut(s) 113, 613
Sse9I AATT 5 cut(s) 326, 439, 557, 886, 1076
SsiI CCGC 1 cut(s) 734
SspI AATATT 1 cut(s) 515
SspMI CTAG 6 cut(s) 114, 422, 614, 677, 1125, 1197
TaaI ACNGT 6 cut(s) 20, 192, 592, 836, 1161, 1242
TaiI ACGT 2 cut(s) 37, 744
TaqI TCGA 2 cut(s) 410, 859
TasI AATT 5 cut(s) 326, 439, 557, 886, 1076
TatI WGTACW 3 cut(s) 110, 635, 936
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 2 cut(s) 82, 377
Tru1I TTAA 3 cut(s) 438, 669, 755
Tru9I TTAA 3 cut(s) 438, 669, 755
TscAI CASTG 4 cut(s) 324, 351, 967, 1247
TseI GCWGC 6 cut(s) 64, 140, 658, 1025, 1061, 1213
TspDTI ATGAA 3 cut(s) 582, 806, 1035
TspRI CASTG 4 cut(s) 324, 351, 967, 1247
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 326, 886
XceI RCATGY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 1082
XmiI GTMKAC 2 cut(s) 22, 245
XmnI GAANNNNTTC 1 cut(s) 1160
XspI CTAG 6 cut(s) 114, 422, 614, 677, 1125, 1197
ZrmI AGTACT 2 cut(s) 112, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.