RLG00000026872

platelet degranulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005918
Physical Location & Seq
Forward (+)
6698390 .. 6701317
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026872

Sequence Viewer

Length: 1326 bp
ATGTGGAATGGGGACCGTAGACAGAGTTTACATATATTTGCACTTGAATCACAGAAGAAGCAGCAAAAAGAGAACCAGAATCTGAATCAGGGAAAAAAGGCTGGTAGTACTAGTACCAAAGATCATCAGACAAATGCTGCTGTTATGTCATCTGGAAATCCTTTACCAGAAAGAAGCAAGCTTCAACTGTTGCTTGGTAAACTGAAAACGAGAGATGTGCACTGTATGTTCTCGGATCCAGTAAATGCAGAAGAGGTGGAATATTATTATGATGTCATTAAAGAACCAATGGATTTTGGCACGACTACAGCAAAACTCAATGGAGGAAGCTACAAAGTACTGCAAGAATTTGAGCATGATGCAACACTGGTATGGAGCAATGCTATGCTTTTCAACGATTCAAGTACCCTTTATTATAAAGAGGCTCGTTCAATAAGAAATCTAGCAACGAAGTTGTTTAATTCTTTGAAAACTGACCCTGAGAGCTTTGTGGAAATATCAAAATCTGGATGCAGAGGTGGAAGAAGATCCAAATATTCTGAAGTAGATCAATGCTATACCTACCGGCCTCTGAATAAATTGCTCAATGAAAACGAGTCAATAGCATCTACAGTCTATCTCAGCCCACAAGAACTAGTGCAGAATAAGCAGAATAGTACTGGATACACAGAAAGCCTGCTGCAGTTTGTTAAAGATCTACGGTCTACTGCTAATACATTTGCATGTTGGAAGTCACAAAGTTCTGAATGGGACACATACAGTAACCTCGGGGGAAAACCAGTTCGAACTATGCTTGATCAGGACAATGGGAATTCTGACTTTATCAGATCCTTATTTGGAAGTTCCAACTTATCTGCTCAGGGTACAAGCATCCACTTCAGTGGAAAATCTGTCTGGGGCATGCCTGATCAAAACTCCTGGTGTTCCTTCATCGACAATCCCTCATTTGGAAATGGATATTCTTTTCCTTCTACATGGAAAAGACAAGTTGAAGCCGTCAACTTATATTCAAGTGCTTTTGATAAGGGTAAGAATGTCCAAGTAGCTAACATATCTTCTTTAGAGCAGAAGATACCGGCTGCAAAAGGTTATGGTTCTTCATCTTCTTCGTCAGCAGCGTGGCTTTTCCAATTTATGTCTGGAGCAACTCAGAGCCCAGCCACTCGCACAAGTTACTCGAGCAATGTGGAGGAGGCAGGCCAAGACTGGAAACGGTTCAGGCCAACAGAGACACCACCACAGCCTGTTTCTAGCCGGCTGTTCCAGCCGCAATCAACATCGGCTGGGGCCCTCACAGTGGGGAGACATTGTTGCATCAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

442

Amino Acids

49.16

Weight (kDa)

8.76

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 65 - 143 1.6e-18 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccI GTMKAC 2 cut(s) 19, 704
AciI CCGC 1 cut(s) 1268
AclWI GGATC 4 cut(s) 230, 243, 522, 822
AcsI RAATTY 2 cut(s) 347, 811
AcuI CTGAAG 2 cut(s) 561, 862
AfaI GTAC 6 cut(s) 109, 115, 339, 406, 658, 865
AfiI CCNNNNNNNGG 2 cut(s) 947, 1297
AgsI TTSAA 8 cut(s) 47, 185, 394, 402, 432, 469, 992, 1011
AhlI ACTAGT 2 cut(s) 110, 634
AjnI CCWGG 1 cut(s) 917
AleI CACNNNNGTG 1 cut(s) 879
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
AluBI AGCT 4 cut(s) 181, 330, 486, 1046
AluI AGCT 4 cut(s) 181, 330, 486, 1046
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 1223, 1297
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 4 cut(s) 230, 243, 522, 822
AlwNI CAGNNNCTG 1 cut(s) 82
Ama87I CYCGRG 2 cut(s) 767, 1177
AoxI GGCC 4 cut(s) 566, 1198, 1220, 1287
ApaI GGGCCC 1 cut(s) 1291
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 5 cut(s) 61, 137, 679, 1079, 1115
ApoI RAATTY 2 cut(s) 347, 811
Asp700I GAANNNNTTC 1 cut(s) 1214
AspS9I GGNCC 3 cut(s) 13, 1287, 1288
AsuII TTCGAA 1 cut(s) 784
AvaI CYCGRG 2 cut(s) 767, 1177
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 2 cut(s) 222, 1291
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 1157, 1291
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 73, 124, 666, 1066, 1127
BceAI ACGGC 1 cut(s) 980
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 919
BciVI GTATCC 1 cut(s) 656
BclI TGATCA 2 cut(s) 796, 907
BcoDI GTCTC 2 cut(s) 1223, 1297
BcuI ACTAGT 2 cut(s) 110, 634
BfaI CTAG 4 cut(s) 111, 443, 635, 1251
BfmI CTRYAG 3 cut(s) 306, 609, 680
BfuI GTATCC 1 cut(s) 656
BglII AGATCT 1 cut(s) 694
BisI GCNGC 6 cut(s) 62, 138, 680, 1080, 1116, 1268
BlsI GCNGC 6 cut(s) 63, 139, 681, 1081, 1117, 1269
BmcAI AGTACT 3 cut(s) 109, 339, 658
Bme1390I CCNGG 1 cut(s) 919
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 767, 1177
BmgT120I GGNCC 3 cut(s) 13, 1287, 1288
BmiI GGNNCC 4 cut(s) 14, 237, 1288, 1289
BmrFI CCNGG 1 cut(s) 919
BmsI GCATC 4 cut(s) 349, 500, 614, 879
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 858
Bpu14I TTCGAA 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 766
BsaXI ACNNNNNCTCC 2 cut(s) 1294, 1324
Bsc4I CCNNNNNNNGG 2 cut(s) 947, 1297
Bse118I RCCGGY 3 cut(s) 564, 1075, 1254
Bse1I ACTGG 5 cut(s) 239, 372, 664, 779, 1211
Bse3DI GCAATG 2 cut(s) 385, 1189
BseBI CCWGG 1 cut(s) 919
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 2 cut(s) 515, 870
BseLI CCNNNNNNNGG 2 cut(s) 947, 1297
BseMI GCAATG 2 cut(s) 385, 1189
BseMII CTCAG 4 cut(s) 471, 634, 872, 1163
BseNI ACTGG 5 cut(s) 239, 372, 664, 779, 1211
BseRI GAGGAG 1 cut(s) 1205
BseSI GKGCMC 2 cut(s) 222, 1291
BseXI GCAGC 5 cut(s) 73, 124, 666, 1066, 1127
BseYI CCCAGC 2 cut(s) 1156, 1283
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 4 cut(s) 568, 1200, 1222, 1289
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 2 cut(s) 767, 1177
BsiSI CCGG 3 cut(s) 565, 1076, 1255
BslFI GGGAC 2 cut(s) 26, 764
BslI CCNNNNNNNGG 2 cut(s) 947, 1297
BsmAI GTCTC 2 cut(s) 1223, 1297
BsmFI GGGAC 2 cut(s) 26, 764
BsnI GGCC 4 cut(s) 568, 1200, 1222, 1289
BsoBI CYCGRG 2 cut(s) 767, 1177
Bsp119I TTCGAA 1 cut(s) 784
Bsp120I GGGCCC 1 cut(s) 1287
Bsp1286I GDGCHC 3 cut(s) 222, 1157, 1291
Bsp143I GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
BspACI CCGC 1 cut(s) 1268
BspANI GGCC 4 cut(s) 568, 1200, 1222, 1289
BspCNI CTCAG 4 cut(s) 472, 633, 871, 1162
BspLI GGNNCC 4 cut(s) 14, 237, 1288, 1289
BspMAI CTGCAG 1 cut(s) 684
BspPI GGATC 4 cut(s) 230, 243, 522, 822
BspT104I TTCGAA 1 cut(s) 784
BsrDI GCAATG 2 cut(s) 385, 1189
BsrFI RCCGGY 3 cut(s) 564, 1075, 1254
BsrI ACTGG 5 cut(s) 239, 372, 664, 779, 1211
BssAI RCCGGY 3 cut(s) 564, 1075, 1254
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
Bst2UI CCWGG 1 cut(s) 919
Bst4CI ACNGT 8 cut(s) 17, 189, 224, 613, 702, 761, 1215, 1297
Bst6I CTCTTC 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 784
BstC8I GCNNGC 5 cut(s) 179, 677, 902, 1198, 1256
BstDEI CTNAG 4 cut(s) 480, 620, 858, 1149
BstF5I GGATG 2 cut(s) 515, 870
BstKTI GATC 8 cut(s) 124, 238, 530, 550, 697, 799, 830, 910
BstMAI GTCTC 2 cut(s) 1223, 1297
BstMBI GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
BstMWI GCNNNNNNNGC 2 cut(s) 646, 1264
BstNI CCWGG 1 cut(s) 919
BstNSI RCATGY 2 cut(s) 726, 904
BstSCI CCNGG 1 cut(s) 917
BstSFI CTRYAG 3 cut(s) 306, 609, 680
BstSLI GKGCMC 2 cut(s) 222, 1291
BstV1I GCAGC 5 cut(s) 73, 124, 666, 1066, 1127
BstX2I RGATCY 4 cut(s) 235, 527, 694, 827
BstXI CCANNNNNNTGG 1 cut(s) 881
BstYI RGATCY 4 cut(s) 235, 527, 694, 827
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 4 cut(s) 568, 1200, 1222, 1289
BtsCI GGATG 2 cut(s) 515, 870
BtsIMutI CAGTG 4 cut(s) 220, 365, 886, 1302
Cac8I GCNNGC 5 cut(s) 179, 677, 902, 1198, 1256
CaiI CAGNNNCTG 1 cut(s) 82
Cfr10I RCCGGY 3 cut(s) 564, 1075, 1254
Cfr13I GGNCC 3 cut(s) 13, 1287, 1288
Csp6I GTAC 6 cut(s) 108, 114, 338, 405, 657, 864
CviAII CATG 4 cut(s) 356, 723, 901, 975
CviQI GTAC 6 cut(s) 108, 114, 338, 405, 657, 864
DdeI CTNAG 4 cut(s) 480, 620, 858, 1149
DpnI GATC 8 cut(s) 123, 237, 529, 549, 696, 798, 829, 909
DpnII GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 1157, 1291
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 561, 862
Eco88I CYCGRG 2 cut(s) 767, 1177
EcoO109I RGGNCCY 2 cut(s) 1287, 1288
EcoRI GAATTC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 917
EcoT38I GRGCYC 2 cut(s) 1157, 1291
FaeI CATG 4 cut(s) 359, 726, 904, 978
FaqI GGGAC 2 cut(s) 26, 764
FatI CATG 4 cut(s) 355, 722, 900, 974
FbaI TGATCA 2 cut(s) 796, 907
FblI GTMKAC 2 cut(s) 19, 704
Fnu4HI GCNGC 6 cut(s) 62, 138, 680, 1080, 1116, 1268
FokI GGATG 2 cut(s) 522, 857
FriOI GRGCYC 2 cut(s) 1157, 1291
Fsp4HI GCNGC 6 cut(s) 62, 138, 680, 1080, 1116, 1268
FspBI CTAG 4 cut(s) 111, 443, 635, 1251
GluI GCNGC 6 cut(s) 62, 138, 680, 1080, 1116, 1268
GsaI CCCAGC 2 cut(s) 1160, 1287
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 4 cut(s) 568, 1200, 1222, 1289
HapII CCGG 3 cut(s) 565, 1076, 1255
Hin1II CATG 4 cut(s) 359, 726, 904, 978
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 5 cut(s) 47, 79, 85, 398, 596
HpaII CCGG 3 cut(s) 565, 1076, 1255
Hpy166II GTNNAC 6 cut(s) 20, 29, 200, 220, 705, 1000
Hpy188I TCNGA 9 cut(s) 84, 129, 235, 541, 573, 745, 817, 827, 1152
Hpy188III TCNNGA 4 cut(s) 153, 507, 800, 1140
Hpy8I GTNNAC 6 cut(s) 20, 29, 200, 220, 705, 1000
HpyAV CCTTC 2 cut(s) 937, 978
HpyCH4III ACNGT 8 cut(s) 17, 189, 224, 613, 702, 761, 1215, 1297
HpyF10VI GCNNNNNNNGC 2 cut(s) 646, 1264
HpyF3I CTNAG 4 cut(s) 480, 620, 858, 1149
Hsp92II CATG 4 cut(s) 359, 726, 904, 978
KroI GCCGGC 1 cut(s) 1254
KroNI GCCGGC 1 cut(s) 1256
Ksp22I TGATCA 2 cut(s) 796, 907
Kzo9I GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
LmnI GCTCC 2 cut(s) 375, 1142
Lsp1109I GCAGC 5 cut(s) 73, 124, 666, 1066, 1127
LweI GCATC 4 cut(s) 349, 500, 614, 879
MaeI CTAG 4 cut(s) 111, 443, 635, 1251
MaeIII GTNAC 3 cut(s) 732, 761, 1172
MalI GATC 8 cut(s) 123, 237, 529, 549, 696, 798, 829, 909
MboI GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
MboII GAAGA 9 cut(s) 67, 263, 534, 537, 1047, 1081, 1089, 1095, 1098
MflI RGATCY 4 cut(s) 235, 527, 694, 827
MhlI GDGCHC 3 cut(s) 222, 1157, 1291
MluCI AATT 5 cut(s) 347, 460, 578, 811, 1130
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 2 cut(s) 707, 870
MroNI GCCGGC 1 cut(s) 1254
MroXI GAANNNNTTC 1 cut(s) 1214
MseI TTAA 3 cut(s) 279, 459, 690
MslI CAYNNNNRTG 3 cut(s) 370, 721, 879
MspI CCGG 3 cut(s) 565, 1076, 1255
MspR9I CCNGG 1 cut(s) 919
MvaI CCWGG 1 cut(s) 919
MwoI GCNNNNNNNGC 2 cut(s) 646, 1264
NaeI GCCGGC 1 cut(s) 1256
NdeII GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
NgoMIV GCCGGC 1 cut(s) 1254
NlaIII CATG 4 cut(s) 359, 726, 904, 978
NlaIV GGNNCC 4 cut(s) 14, 237, 1288, 1289
NmuCI GTSAC 1 cut(s) 732
NspI RCATGY 2 cut(s) 726, 904
NspV TTCGAA 1 cut(s) 784
OliI CACNNNNGTG 1 cut(s) 879
PaeI GCATGC 1 cut(s) 904
PaeR7I CTCGAG 1 cut(s) 1177
PcsI WCGNNNNNNNCGW 1 cut(s) 1115
PdiI GCCGGC 1 cut(s) 1256
PdmI GAANNNNTTC 1 cut(s) 1214
PfeI GAWTC 4 cut(s) 47, 79, 85, 398
PkrI GCNGC 6 cut(s) 63, 139, 681, 1081, 1117, 1269
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PsiI TTATAA 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 917
PspFI CCCAGC 2 cut(s) 1156, 1283
PspGI CCWGG 1 cut(s) 917
PspN4I GGNNCC 4 cut(s) 14, 237, 1288, 1289
PspOMI GGGCCC 1 cut(s) 1287
PspPI GGNCC 3 cut(s) 13, 1287, 1288
PspXI VCTCGAGB 1 cut(s) 1177
PstI CTGCAG 1 cut(s) 684
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 4 cut(s) 235, 527, 694, 827
RsaI GTAC 6 cut(s) 109, 115, 339, 406, 658, 865
RsaNI GTAC 6 cut(s) 108, 114, 338, 405, 657, 864
RseI CAYNNNNRTG 3 cut(s) 370, 721, 879
SaqAI TTAA 3 cut(s) 279, 459, 690
SatI GCNGC 6 cut(s) 62, 138, 680, 1080, 1116, 1268
Sau3AI GATC 8 cut(s) 121, 235, 527, 547, 694, 796, 827, 907
Sau96I GGNCC 3 cut(s) 13, 1287, 1288
ScaI AGTACT 3 cut(s) 109, 339, 658
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 919
SduI GDGCHC 3 cut(s) 222, 1157, 1291
SetI ASST 9 cut(s) 183, 258, 332, 488, 520, 563, 768, 1048, 1090
SfaNI GCATC 4 cut(s) 349, 500, 614, 879
SfcI CTRYAG 3 cut(s) 306, 609, 680
Sfr274I CTCGAG 1 cut(s) 1177
SfuI TTCGAA 1 cut(s) 784
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 1177
SmiMI CAYNNNNRTG 3 cut(s) 370, 721, 879
SmlI CTYRAG 1 cut(s) 1177
SmoI CTYRAG 1 cut(s) 1177
SpeI ACTAGT 2 cut(s) 110, 634
SphI GCATGC 1 cut(s) 904
Sse9I AATT 5 cut(s) 347, 460, 578, 811, 1130
SsiI CCGC 1 cut(s) 1268
SspI AATATT 2 cut(s) 263, 536
SspMI CTAG 4 cut(s) 111, 443, 635, 1251
StyD4I CCNGG 1 cut(s) 917
TaaI ACNGT 8 cut(s) 17, 189, 224, 613, 702, 761, 1215, 1297
TaqI TCGA 3 cut(s) 784, 933, 1178
TasI AATT 5 cut(s) 347, 460, 578, 811, 1130
TatI WGTACW 3 cut(s) 107, 337, 656
TauI GCSGC 1 cut(s) 1270
TfiI GAWTC 4 cut(s) 47, 79, 85, 398
Tru1I TTAA 3 cut(s) 279, 459, 690
Tru9I TTAA 3 cut(s) 279, 459, 690
TscAI CASTG 4 cut(s) 227, 372, 886, 1302
TseFI GTSAC 1 cut(s) 732
TseI GCWGC 5 cut(s) 61, 137, 679, 1079, 1115
Tsp45I GTSAC 1 cut(s) 732
TspDTI ATGAA 3 cut(s) 603, 919, 1089
TspRI CASTG 4 cut(s) 227, 372, 886, 1302
VneI GTGCAC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 2 cut(s) 347, 811
XceI RCATGY 2 cut(s) 726, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XhoI CTCGAG 1 cut(s) 1177
XmiI GTMKAC 2 cut(s) 19, 704
XmnI GAANNNNTTC 1 cut(s) 1214
XspI CTAG 4 cut(s) 111, 443, 635, 1251
ZrmI AGTACT 3 cut(s) 109, 339, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.