Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360863.1

Orthogroup ID

OG0005918

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 890

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgctgcgctgctttgccttgtctgagctgggcgacaagtcgattcctgctacaaacccctcctcaagcacccaccaaggtggggcaaagttggattctggaccctctactcctttacccaatacaaagctgctacttttcgttcttgagaggcttcaaaagaaggacacctatggagtgttttctgaacctgtggacccggaagagcttccagactaccatgaagtaatagacaaccctatggattttgggacagtgaagaagaaacttactagtggagcgtatgccagcttggagcagtttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

102

Amino Acids

11.19

Weight (kDa)

4.94

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09360 FvH4_7g26330
malus_domestica	MD01G1172400.v1.1 MD04G1178300.v1.1 MD07G1238700.v1.1
prunus_persica	Prupe.2G267500_v2.0.a1 Prupe.6G298300_v2.0.a1
pyrus_communis	pycom01g18390 pycom07g21470
rosa_chinensis	RchiOBHm_Chr1g0372791 RchiOBHm_Chr3g0459751
rosa_laevigata	RLG00000025060 RLG00000026872
rosa_multiflora	Rmu_co8360863.1_g000001 Rmu_sc0000240.1_g000036 Rmu_ssc0000024.1_g000009
rosa_roxburghii	Rroxscaffold_6G00420000
rosa_rugosa	Rorug01G0374300 Rorug03G0038100
rosa_samantha	Rh1AG383100 Rh1BG346800 Rh1CG360100 Rh1DG377700 Rh3AG096600 Rh3BG099300 Rh3CG101200 Rh3DG100600
rosa_wichuraiana	Rw1G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	158
AhlI	ACTAGT	1 cut(s)	272
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	4 cut(s)	28, 130, 208, 291
AluI	AGCT	4 cut(s)	28, 130, 208, 291
ApeKI	GCWGC	3 cut(s)	4, 9, 130
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	101, 196
AsuC2I	CCSGG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	101, 196
BbvI	GCAGC	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	3 cut(s)	5, 10, 131
BlsI	GCNGC	3 cut(s)	6, 11, 132
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	101, 196
BmgT120I	GGNCC	2 cut(s)	101, 196
BmiI	GGNNCC	2 cut(s)	103, 198
BmrFI	CCNGG	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	49, 167
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	103, 198
BspQI	GCTCTTC	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	101, 196
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	5 cut(s)	28, 130, 154, 208, 291
CviKI_1	RGCY	5 cut(s)	28, 130, 154, 208, 291
DdeI	CTNAG	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	101, 196
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	224
FaiI	YATR	4 cut(s)	174, 222, 242, 285
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	5, 10, 131
Fsp4HI	GCNGC	3 cut(s)	5, 10, 131
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	5, 10, 131
GsaI	CCCAGC	1 cut(s)	32
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	43, 95
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	25, 187
Hpy188III	TCNNGA	3 cut(s)	99, 146, 212
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	256
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	278, 295
LpnPI	CCDG	7 cut(s)	14, 60, 84, 204, 213, 225, 301
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	273
MboII	GAAGA	3 cut(s)	215, 271, 274
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	70, 73, 115, 144
MroXI	GAANNNNTTC	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	200
NciI	CCSGG	1 cut(s)	200
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	2 cut(s)	103, 198
OliI	CACNNNNGTG	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	43, 95
PkrI	GCNGC	3 cut(s)	6, 11, 132
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	103, 198
PspPI	GGNCC	2 cut(s)	101, 196
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	198
SatI	GCNGC	3 cut(s)	5, 10, 131
Sau96I	GGNCC	2 cut(s)	101, 196
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	7 cut(s)	30, 82, 132, 173, 193, 210, 293
SinI	GGWCC	2 cut(s)	101, 196
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	64, 146
SmoI	CTYRAG	2 cut(s)	64, 146
SpeI	ACTAGT	1 cut(s)	272
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	43, 95
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	3 cut(s)	4, 9, 130
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	101, 196
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.